Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 132 1e-25
seq13894 131 4e-25
>seq12471
Length=105862
Score = 132 bits (146), Expect = 1e-25
Identities = 161/218 (74%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959
|| || || | |||||| || || ||||| |||||||| ||||| || || | ||||
Sbjct 73126 CTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCA 73185
Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019
||||||| || || || ||||| || | || ||||| || ||||||| ||||| |||
Sbjct 73186 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTG 73245
Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTG 211076
|| || ||||| ||| || || ||||| ||||| |||| ||||| ||||| ||
Sbjct 73246 TCTTGAATCTTGGCTTTTACATTCTCGATAGTGTC---GCTTGGCTCAACTTCGAGCGTA 73302
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || ||||| | ||||||
Sbjct 73303 ATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 120 bits (132), Expect = 7e-22
Identities = 164/225 (73%), Gaps = 8/225 (4%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952
||||| || | || | ||| || |||||||| ||||||||||| ||||| | ||| ||
Sbjct 72147 CGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAA-TGT 72205
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || || || || || || ||||| | || |||||||| || |||| |||
Sbjct 72206 GCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCC 72265
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069
|| ||||| |||||||| || || ||||| ||||||||| ||| || || ||
Sbjct 72266 CTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCA---CTTGGCTCGACTTC 72322
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| ||||| ||||| || || || || || ||||| | ||||||
Sbjct 72323 CAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 118 bits (130), Expect = 2e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970
|| |||||||| || ||||||||||| ||||| | ||| || | |||||||||| ||
Sbjct 72621 TGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAA-TGTACGACCATCTTCCAATTG 72679
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
|| || ||||| || | || ||||| || ||||| | || || || || ||||||||
Sbjct 72680 TTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGGATCTT 72739
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
||| || |||||||| |||||| ||||||||| | |||||| ||||| || ||
Sbjct 72740 GGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTGCCAGT 72799
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
| ||||| || || | |||||
Sbjct 72800 CAAGGTCTTAACGAAGATTTGCAT 72823
>seq13894
Length=1211295
Score = 131 bits (144), Expect = 4e-25
Identities = 158/214 (74%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTT-TGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961
|| ||||| ||||| || || || ||| |||||||| ||||| | | ||| | |||||
Sbjct 231733 AGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCATC 231792
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|||||| || || || || ||||| | || || || || ||||||| ||||| |||||
Sbjct 231793 TTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTC 231852
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||||| || |||||||||||||| || || || ||| || || || ||||| ||
Sbjct 231853 TTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGT 231912
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||| || || | ||| || || || | |||||||
Sbjct 231913 CTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Score = 123 bits (136), Expect = 6e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| ||||| || || || |||||||| ||||| | | ||| | |||||||||| |||
Sbjct 231514 TGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGC 231573
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || || || | ||||||||||| || || | ||||| ||||||||||| ||
Sbjct 231574 TTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTC 231633
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| || || || |||||||| || ||| || ||||| || || |||||||| ||
Sbjct 231634 GCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTT 231693
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
| ||| || || || | ||||||
Sbjct 231694 AAAGTTTTCACGAAAATCTGCAT 231716
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|| || ||||| || || || || |||||||| || || | | ||| | |||||||||
Sbjct 232193 ACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTCC 232252
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
| |||||||| || || || | ||||| || || || || | ||||| || ||||||
Sbjct 232253 AATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTGG 232312
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
|| || ||||||||||| || || || || || || |||||||| || |||||
Sbjct 232313 ATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTTA 232372
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || | || || ||||| | |||||||||
Sbjct 232373 CCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158933101751735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |