Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq12471 132 1e-25 seq13894 131 4e-25 >seq12471 Length=105862 Score = 132 bits (146), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | |||||| || || ||||| |||||||| ||||| || || | |||| Sbjct 73126 CTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCA 73185 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||||| || || || ||||| || | || ||||| || ||||||| ||||| ||| Sbjct 73186 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTG 73245 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTG 211076 || || ||||| ||| || || ||||| ||||| |||| ||||| ||||| || Sbjct 73246 TCTTGAATCTTGGCTTTTACATTCTCGATAGTGTC---GCTTGGCTCAACTTCGAGCGTA 73302 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || ||||| | |||||| Sbjct 73303 ATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 120 bits (132), Expect = 7e-22 Identities = 164/225 (73%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| || | || | ||| || |||||||| ||||||||||| ||||| | ||| || Sbjct 72147 CGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAA-TGT 72205 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || || || || || ||||| | || |||||||| || |||| ||| Sbjct 72206 GCGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCC 72265 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 || ||||| |||||||| || || ||||| ||||||||| ||| || || || Sbjct 72266 CTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCA---CTTGGCTCGACTTC 72322 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || || || || || ||||| | |||||| Sbjct 72323 CAATGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 118 bits (130), Expect = 2e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 || |||||||| || ||||||||||| ||||| | ||| || | |||||||||| || Sbjct 72621 TGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAA-TGTACGACCATCTTCCAATTG 72679 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| || | || ||||| || ||||| | || || || || |||||||| Sbjct 72680 TTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGGATCTT 72739 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || |||||||| |||||| ||||||||| | |||||| ||||| || || Sbjct 72740 GGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTGCCAGT 72799 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 72800 CAAGGTCTTAACGAAGATTTGCAT 72823 >seq13894 Length=1211295 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTT-TGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 || ||||| ||||| || || || ||| |||||||| ||||| | | ||| | ||||| Sbjct 231733 AGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCATC 231792 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||| || || || || ||||| | || || || || ||||||| ||||| ||||| Sbjct 231793 TTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTC 231852 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| || |||||||||||||| || || || ||| || || || ||||| || Sbjct 231853 TTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGT 231912 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || | ||| || || || | ||||||| Sbjct 231913 CTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || || || |||||||| ||||| | | ||| | |||||||||| ||| Sbjct 231514 TGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGC 231573 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | ||||||||||| || || | ||||| ||||||||||| || Sbjct 231574 TTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTC 231633 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || |||||||| || ||| || ||||| || || |||||||| || Sbjct 231634 GCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTT 231693 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | |||||| Sbjct 231694 AAAGTTTTCACGAAAATCTGCAT 231716 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || ||||| || || || || |||||||| || || | | ||| | ||||||||| Sbjct 232193 ACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTCC 232252 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | |||||||| || || || | ||||| || || || || | ||||| || |||||| Sbjct 232253 AATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTGG 232312 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||||||||||| || || || || || || |||||||| || ||||| Sbjct 232313 ATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTTA 232372 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | || || ||||| | ||||||||| Sbjct 232373 CCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158933101751735