Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 161 7e-35
seq13894 131 1e-25
seq7061 86.0 4e-12
>seq12471
Length=105862
Score = 161 bits (178), Expect = 7e-35
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || ||||||||||| |||||||| || || ||||||||||| | |
Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | ||||| || ||| ||||||||||| | || || ||||||
Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || || || |||||| ||||||| | |||||| | |||||||||||
Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAAC 73161
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || ||||| || || | || || || | |||||| |||| ||
Sbjct 73160 ATCCAGAAAGAATCGACGCTTCACTTGGTGCTCAGGTTGAGAGGCGG 73114
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||| || || ||||| || || |||||||||||||| | |
Sbjct 72595 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC 72536
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | ||||| |||||| || || ||||| | || || ||||||
Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || |||||||| ||||| |||| || | ||||||||| |||| ||||||
Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || ||||| ||||| | || || || | |||||| |||| ||
Sbjct 72415 ATTCAGAAAGAATCCACCCTTCACTTGGTGCTCAGGTTGAGAGGCGG 72369
Score = 140 bits (154), Expect = 2e-28
Identities = 161/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| |||||||| || || || || ||||| | ||||| || | |
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | |||| | ||| || || ||||||||||| | || |||||||||
Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAA 72993
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| |||| ||||| || |||||||| ||||| | ||||| | |||||||||||
Sbjct 72992 CAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGCGATTACAAC 72933
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGT 23827
|| || ||||| || || | ||||| |||||| |||
Sbjct 72932 ATTCAGAAAGAATCAACGCTTCATTTGGTTTTACGGT 72896
Score = 136 bits (150), Expect = 3e-27
Identities = 151/199 (76%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| ||||| ||||| |||||||| || || | ||||| || | |
Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || |||| ||| | ||| | || | | ||||||||||| | || |||||||
Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGA-TCCAAGACAAAGAAGGGATTCCTCCAGATC 73513
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||||||||| || || ||||| |||||| ||||||| | |||||||| |||| ||||
Sbjct 73512 AACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACA 73453
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || ||||| || ||
Sbjct 73452 ACATTCAGAAAGAATCAAC 73434
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| |||||||||||||| |||||||| || ||| | || || || | |
Sbjct 73858 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGGAGCCAAGC 73799
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| || || ||||| | || || ||||||
Sbjct 73798 GACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCCGATCAA 73739
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| || || || || || || || || ||||||| ||||| | |||| ||||||
Sbjct 73738 CAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACACTTAGCGACTACAAC 73679
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|| || ||||| || || || ||||| || || |||||||||||||||
Sbjct 73678 ATCCAGAAAGAATCGACCTTGCATTTGGTATTGAGGTTGCGAGGAGGA 73631
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || || || || ||||| | ||||| || | |
Sbjct 72367 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACATTGGAAGTCGAGCCAAGT 72308
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || || || |||||||| || | ||||| || |||
Sbjct 72307 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATTCCGCCCGACCAA 72248
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| || || ||||| || |||||||| || || | ||||| || |||||||||||
Sbjct 72247 CAGCGATTGATCTTTGCTGGTAAACAACTCGAGGATGGTCGCACATTGAGCGATTACAAC 72188
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| |||||||| | || || ||||| ||| | || || ||
Sbjct 72187 ATCCAAAAGGAGTCCACGCTCCACTTGGTTTTGAGGCTTCGCGGTGG 72141
Score = 122 bits (134), Expect = 6e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || |||||||| ||| | || || || || |||||| | || ||||| | |
Sbjct 72823 ATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGT 72764
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| | ||| || || || ||||| || | || || ||||||
Sbjct 72763 GACACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCAA 72704
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || || || |||||| ||||||| | || || || |||||||||||
Sbjct 72703 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGCGATTACAAC 72644
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| || ||||| | ||||| ||| | ||||| |||| ||
Sbjct 72643 ATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGGTTGAGAGGTGG 72597
>seq13894
Length=1211295
Score = 131 bits (144), Expect = 1e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| ||||| | || ||||| || || || |||||||| || | ||
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | |||| | ||||||||||| | || || || ||
Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAA-TCCAGGACAAAGAAGGCATCCCACCCGACCA 231598
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| |||||||| ||||| || || ||| ||||||| | || || || |||||||||
Sbjct 231597 ACAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAA 231538
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || || || || || | ||||| ||||| | ||| |||| |||
Sbjct 231537 CATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGGA 231489
Score = 114 bits (126), Expect = 9e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || |||||| | || |||||||| |||||| | ||||| || | |
Sbjct 232173 ATGCAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCA 232114
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || ||||| |||||||| || | || ||||||||
Sbjct 232113 GACACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAG 232054
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| || || || || || || || ||| ||||||| | || || || ||||||||||
Sbjct 232053 CAACGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGACCTTGTCCGATTACAAC 231994
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|| || |||||||| || | ||| | || | | ||| |||| |||
Sbjct 231993 ATCCAGAAAGAGTCAACCCTTCATCTTGTACTGCGTTTGAGAGGTGGA 231946
Score = 113 bits (124), Expect = 3e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||||||||| || |||||| | || || || || || ||||||||||| || |
Sbjct 232404 AAAATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCT 232345
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || |||||| | || ||||| || ||||||||| | || || |||
Sbjct 232344 TCCGATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGAT 232285
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || || ||||| ||||| ||||| ||| ||||||| | || || ||| ||| |||
Sbjct 232284 CAGCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTAC 232225
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || || || ||
Sbjct 232224 AACATCCAGAAGGAATCGAC 232205
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| ||||| | || || || || ||||| || ||||| || | |
Sbjct 231946 AATGCAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTC 231887
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | |||| | || ||||| ||||||||||| | || || |||||
Sbjct 231886 CGATACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCA 231827
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || |||||||| |||||||||||||| | || || || ||||||||
Sbjct 231826 GCAGCGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAACCTTGTCAGATTACAA 231767
Query 23790 CATACAAAAAG 23800
||| || ||||
Sbjct 231766 CATCCAGAAAG 231756
>seq7061
Length=6671
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/229 (69%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA--C 23669
||||||| || |||||||| | ||||| ||| | || || | || ||| || |
Sbjct 2764 TGCAGATCTTTGTTAAAACTTTAACGGGGAAATCCATAACGATAGA--TTGCGAGCATTC 2821
Query 23670 GGACACTGTTGAAATAT-TAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||| || | |||||| | ||| |||| ||| || |||||||| || | || || |
Sbjct 2822 GGATACCATC-AAATATATCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACC 2880
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | ||||| ||||| || ||||| | ||||| ||| | | | |||||||
Sbjct 2881 AGCAAAGATTAATCTTTGCTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACA 2940
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
| ||||| ||||| ||| ||||||||||| ||||| || || || ||
Sbjct 2941 ATATACAGAAAGAAAACACTTTACATTTAGTATTAAGATTACGCGGTGG 2989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337948882807412
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