Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12471 150 4e-31 seq13894 136 9e-27 seq10837 111 4e-19 seq3688 95.1 3e-14 seq13064 87.8 4e-12 seq11738 87.8 4e-12 seq3255 87.8 4e-12 seq14185 86.0 1e-11 seq3409 86.0 1e-11 >seq12471 Length=105862 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| |||| || | |||||| ||||| || ||||||| ||||||||| ||| || Sbjct 72147 CGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTG 72206 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || || || ||||| ||||| | ||| ||||||||||||||||| || Sbjct 72207 CGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCC 72266 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||||||||| ||| ||| ||| |||||||| | || || || || Sbjct 72267 TCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAAT 72326 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||| ||||| Sbjct 72327 GTGATGGTCTTGCCAGTCAGGGTTTT 72352 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||| ||||||| ||||||||| ||| || | |||||||| | || Sbjct 72621 TGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTCCAATTGT 72680 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | || ||||| || || || || || || || ||||||||||| Sbjct 72681 TTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGGATCTTG 72740 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| |||||| ||||| | ||| || ||||| ||||| |||||||| ||| Sbjct 72741 GCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTGCCAGTC 72800 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | |||||| Sbjct 72801 AAGGTCTTAACGAAGATTTGCAT 72823 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| || | ||||||||| | || | |||||||| || || Sbjct 72910 TGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTCGAGTTGT 72969 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 |||||||| ||||| || || ||||| || || || || ||||| |||||||||||||| Sbjct 72970 TTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGGATCTTG 73029 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| |||||| ||||| | || || || |||||||| |||||||| ||| Sbjct 73030 GCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTGCCAGTC 73089 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | |||||| Sbjct 73090 AGGGTTTTGACGAAGATTTGCAT 73112 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| |||||||| || | ||||| ||| |||||| | |||||| Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || |||||||| | || ||||| || || ||||| ||||| |||||| Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || ||||| || | || || || || || || || Sbjct 73539 TGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTT 73598 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | ||||| | ||| | |||||| Sbjct 73599 TTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || || || | ||| || ||||||||||| || | ||||| ||| ||||| | ||| Sbjct 72381 CTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCA 72440 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || | ||| || || || || || || || ||||| ||||| || || |||||||| Sbjct 72441 TCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTA 72500 Query 225619 TCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || ||| || || ||| ||||| ||||| | || || || | || || Sbjct 72501 TCTTGAAT-TTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAAT 72559 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || | |||||| Sbjct 72560 GGTCTTTCCAGTAAGAGTTTT 72580 >seq13894 Length=1211295 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTT-TGGACATTGTAATCGGCCAAAGTTCTCCCAT 225559 ||| ||||| || || || ||||| ||| |||| |||||||| | ||| |||| |||| Sbjct 231732 CAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCAT 231791 Query 225560 CTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGT 225619 |||| || || || || || ||||| | || || || || || ||||| ||||| |||| Sbjct 231792 CTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGT 231851 Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 ||||||| || |||||| |||||| || || || | ||| || || | |||||| | Sbjct 231852 CTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGG 231911 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||| || || |||||||| | ||| | |||||| Sbjct 231912 TCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||| || |||| |||||||||| ||| |||| |||||||| | ||| Sbjct 231514 TGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGC 231573 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | |||||||||||||| || || ||||| ||||| ||||| || Sbjct 231574 TTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTC 231633 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| || |||||||| || | ||| || || | || || ||||| || || Sbjct 231634 GCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTT 231693 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 |||||||| | ||| | ||||| Sbjct 231694 AAAGTTTTCACGAAAATCTGCAT 231716 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || || || ||||| |||| |||||||||| ||| || | ||||| Sbjct 231961 CAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATC 232020 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | ||||| || |||||||| | |||||| || || || || || || || ||||| Sbjct 232021 TTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTC 232080 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||| || ||| || ||| ||||||||||| | ||| || || || ||||| || Sbjct 232081 TTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGT 232140 Query 225681 CTTGCCCGTCAAAGTTTT 225698 || || || || ||||| Sbjct 232141 TTTTCCAGTTAAGGTTTT 232158 >seq10837 Length=15356 Score = 111 bits (122), Expect = 4e-19 Identities = 200/289 (69%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||||| || |||||| | |||||||| | ||||||| ||| ||| | ||||| Sbjct 6747 TATATTTTATTTTTGGTTTATGATCTGGTATAGTTGGTACTAGATTATCTTTAATTATTC 6688 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | ||||||||||| || |||| | || | ||||||| | || | ||||| Sbjct 6687 GTTTAGAATTAGCAAAACCTGGTTTT------TTTATTGGTAATGGTCAGTTATACAA-- 6636 Query 7565 TTAT-TATTA-CGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 || | ||||| | || ||||| || | || ||||| ||| | || || || ||| || Sbjct 6635 TTCTGTATTAACAGCCCATGCTATTTTAATAATTTTTTTTATAGTAATACCAAGTATAAT 6576 Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682 || ||||| || |||||||| ||||||||||| | || || |||||||| ||||| Sbjct 6575 TGGTGGTTTTGGTAATTGATTAGTTCCTTTAATATTAGGGGCACCTGATATAAGGTTTCC 6516 Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 | | || ||| | || |||||| || || | || | ||||| || Sbjct 6515 TCGTTTAAATAATTTGAGATTTTGACTATTATCAACTGCTATATTTTTA 6467 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 |||||||||||||| |||||||| ||||||||||||| | ||||| || || | Sbjct 6078 TCAGGATGACCAAAGAATCAGAACAAATGTTGATAAATTAAAGGATTACCACCAGTACTT 6137 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 || |||||||| |||||| ||||| | ||||||||| |||| Sbjct 6138 GGGTCAAAAAATGAAGTATTTAAATTACGATCAGTTAATAACA 6180 >seq3688 Length=1697 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | Sbjct 1145 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 1086 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||| |||||||| |||||| |||| | |||||| ||| | || | || Sbjct 1085 CCGTCAATTCCTTTAAGTTTTAATCTTGCGACCGTACTCCTCAGGCGGAGTGCTTAATGC 1026 Query 7855 GTTAGCT 7861 ||||||| Sbjct 1025 GTTAGCT 1019 >seq13064 Length=23918 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||||||||||||||||||||| ||||| || || || || || ||||| | Sbjct 13281 ATACTTCTGGATGACCAAAAAATCAGAATAAGTGTTGGTATAGAATTGGGTCTCCTCCTC 13340 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| || ||||| || || || |||| |||| || ||||| Sbjct 13341 CTGTGGGGTCAAAGAATCTTGTGTTAATGTTTCGGTCTGTTAA 13383 >seq11738 Length=1031 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||||||||||||||||||||| ||||| || || || || || ||||| | Sbjct 784 ATACTTCTGGATGACCAAAAAATCAGAATAAGTGTTGGTAGAGAATTGGGTCTCCTCCTC 843 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| || ||||| || || || |||| |||| || ||||| Sbjct 844 CTGTGGGGTCAAAGAATCTTGTGTTAATGTTTCGGTCTGTTAA 886 >seq3255 Length=1186 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||||||||||||||||||||| ||||| || || || || || ||||| | Sbjct 169 ATACTTCTGGATGACCAAAAAATCAGAATAAGTGTTGGTAGAGAATTGGGTCTCCTCCTC 110 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| || ||||| || || || |||| |||| || ||||| Sbjct 109 CTGTGGGGTCAAAGAATCTTGTGTTAATGTTTCGGTCTGTTAA 67 >seq14185 Length=1273652 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 309106 AAGATTTGTCCATCGGTGATAGAAATCACATTGGTCGGGATATAAGCTGATACGTCACCA 309165 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 ||||| ||||||| || || | || || || |||||||| || || || Sbjct 309166 GCTTGAGTTTCGATCACGGGCAGAGCAGTGAGGGATCCACCTCCGAATTT 309215 >seq3409 Length=1059 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAA-TGTTGATAAAGGATAGGATCGCCTCCG 370726 ||| ||| |||||||||||||||||||||||| ||||| || || || || || ||||| Sbjct 359 ATACTTCTGGATGACCAAAAAATCAGAATAAAGTGTTGGTAGAGAATTGGGTCTCCTCCT 418 Query 370727 CCTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||| || ||||| || || || |||| |||| || ||||| Sbjct 419 CCTGTGGGGTCAAAGAATCTTGTGTTAATGTTTCGGTCTGTTAA 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192305998308866