Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 150 4e-31
seq13894 136 9e-27
seq10837 111 4e-19
seq3688 95.1 3e-14
seq13064 87.8 4e-12
seq11738 87.8 4e-12
seq3255 87.8 4e-12
seq14185 86.0 1e-11
seq3409 86.0 1e-11
>seq12471
Length=105862
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| |||| || | |||||| ||||| || ||||||| ||||||||| ||| ||
Sbjct 72147 CGAAGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTG 72206
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || || || || ||||| ||||| | ||| ||||||||||||||||| ||
Sbjct 72207 CGACCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCC 72266
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| |||||||||||||| ||| ||| ||| |||||||| | || || || ||
Sbjct 72267 TCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAAT 72326
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| |||| |||||
Sbjct 72327 GTGATGGTCTTGCCAGTCAGGGTTTT 72352
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| ||||||||||| ||||||| ||||||||| ||| || | |||||||| | ||
Sbjct 72621 TGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATCTTCCAATTGT 72680
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| |||||||| || | || ||||| || || || || || || || |||||||||||
Sbjct 72681 TTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATCTTGGATCTTG 72740
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
|| ||| |||||| ||||| | ||| || ||||| ||||| |||||||| |||
Sbjct 72741 GCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGTCTTGCCAGTC 72800
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
|| || || | ||| | ||||||
Sbjct 72801 AAGGTCTTAACGAAGATTTGCAT 72823
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || || |||||||| || | ||||||||| | || | |||||||| || ||
Sbjct 72910 TGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCTTCGAGTTGT 72969
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|||||||| ||||| || || ||||| || || || || ||||| ||||||||||||||
Sbjct 72970 TTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGGATCTTG 73029
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
|| ||| |||||| ||||| | || || || |||||||| |||||||| |||
Sbjct 73030 GCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTGCCAGTC 73089
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
| ||||| | ||| | ||||||
Sbjct 73090 AGGGTTTTGACGAAGATTTGCAT 73112
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| ||||| |||||||| || | ||||| ||| |||||| | ||||||
Sbjct 73419 AGCACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCT 73478
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | || || || |||||||| | || ||||| || || ||||| ||||| ||||||
Sbjct 73479 TCCAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCT 73538
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| || ||||| || | || || || || || || ||
Sbjct 73539 TGGATCTTGGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTT 73598
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || || | ||||| | ||| | ||||||
Sbjct 73599 TTTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631
Score = 89.7 bits (98), Expect = 1e-12
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|| || || | ||| || ||||||||||| || | ||||| ||| ||||| | |||
Sbjct 72381 CTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCA 72440
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
|| || | ||| || || || || || || || ||||| ||||| || || ||||||||
Sbjct 72441 TCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTA 72500
Query 225619 TCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||| || ||| || || ||| ||||| ||||| | || || || | || ||
Sbjct 72501 TCTTGAAT-TTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAAT 72559
Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698
||||| || || | ||||||
Sbjct 72560 GGTCTTTCCAGTAAGAGTTTT 72580
>seq13894
Length=1211295
Score = 136 bits (150), Expect = 9e-27
Identities = 160/215 (74%), Gaps = 1/215 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTT-TGGACATTGTAATCGGCCAAAGTTCTCCCAT 225559
||| ||||| || || || ||||| ||| |||| |||||||| | ||| |||| ||||
Sbjct 231732 CAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCAT 231791
Query 225560 CTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGT 225619
|||| || || || || || ||||| | || || || || || ||||| ||||| ||||
Sbjct 231792 CTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGT 231851
Query 225620 CTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
||||||| || |||||| |||||| || || || | ||| || || | |||||| |
Sbjct 231852 CTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGG 231911
Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|||| || || |||||||| | ||| | ||||||
Sbjct 231912 TCTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946
Score = 132 bits (146), Expect = 1e-25
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| ||||| ||||| || |||| |||||||||| ||| |||| |||||||| | |||
Sbjct 231514 TGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTGC 231573
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || || || | |||||||||||||| || || ||||| ||||| ||||| ||
Sbjct 231574 TTTCCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTC 231633
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| || |||||||| || | ||| || || | || || ||||| || ||
Sbjct 231634 GCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTT 231693
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
|||||||| | ||| | |||||
Sbjct 231694 AAAGTTTTCACGAAAATCTGCAT 231716
Score = 132 bits (146), Expect = 1e-25
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| || || || || ||||| |||| |||||||||| ||| || | |||||
Sbjct 231961 CAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATC 232020
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| | ||||| || |||||||| | |||||| || || || || || || || |||||
Sbjct 232021 TTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGTC 232080
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|||||| || ||| || ||| ||||||||||| | ||| || || || ||||| ||
Sbjct 232081 TTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGGT 232140
Query 225681 CTTGCCCGTCAAAGTTTT 225698
|| || || || |||||
Sbjct 232141 TTTTCCAGTTAAGGTTTT 232158
>seq10837
Length=15356
Score = 111 bits (122), Expect = 4e-19
Identities = 200/289 (69%), Gaps = 10/289 (3%)
Strand=Plus/Minus
Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504
||||||| || |||||| | |||||||| | ||||||| ||| ||| | |||||
Sbjct 6747 TATATTTTATTTTTGGTTTATGATCTGGTATAGTTGGTACTAGATTATCTTTAATTATTC 6688
Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564
| ||||||||||| || |||| | || | ||||||| | || | |||||
Sbjct 6687 GTTTAGAATTAGCAAAACCTGGTTTT------TTTATTGGTAATGGTCAGTTATACAA-- 6636
Query 7565 TTAT-TATTA-CGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622
|| | ||||| | || ||||| || | || ||||| ||| | || || || ||| ||
Sbjct 6635 TTCTGTATTAACAGCCCATGCTATTTTAATAATTTTTTTTATAGTAATACCAAGTATAAT 6576
Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682
|| ||||| || |||||||| ||||||||||| | || || |||||||| |||||
Sbjct 6575 TGGTGGTTTTGGTAATTGATTAGTTCCTTTAATATTAGGGGCACCTGATATAAGGTTTCC 6516
Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731
| | || ||| | || |||||| || || | || | ||||| ||
Sbjct 6515 TCGTTTAAATAATTTGAGATTTTGACTATTATCAACTGCTATATTTTTA 6467
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/103 (79%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732
|||||||||||||| |||||||| ||||||||||||| | ||||| || || |
Sbjct 6078 TCAGGATGACCAAAGAATCAGAACAAATGTTGATAAATTAAAGGATTACCACCAGTACTT 6137
Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
|| |||||||| |||||| ||||| | ||||||||| ||||
Sbjct 6138 GGGTCAAAAAATGAAGTATTTAAATTACGATCAGTTAATAACA 6180
>seq3688
Length=1697
Score = 95.1 bits (104), Expect = 3e-14
Identities = 98/127 (77%), Gaps = 1/127 (1%)
Strand=Plus/Minus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| ||||| || ||||||||||||| ||||||||||| | |
Sbjct 1145 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 1086
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854
|||||| || |||| |||||||| |||||| |||| | |||||| ||| | || | ||
Sbjct 1085 CCGTCAATTCCTTTAAGTTTTAATCTTGCGACCGTACTCCTCAGGCGGAGTGCTTAATGC 1026
Query 7855 GTTAGCT 7861
|||||||
Sbjct 1025 GTTAGCT 1019
>seq13064
Length=23918
Score = 87.8 bits (96), Expect = 4e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| ||| ||||||||||||||||||||||| ||||| || || || || || ||||| |
Sbjct 13281 ATACTTCTGGATGACCAAAAAATCAGAATAAGTGTTGGTATAGAATTGGGTCTCCTCCTC 13340
Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| || ||||| || || || |||| |||| || |||||
Sbjct 13341 CTGTGGGGTCAAAGAATCTTGTGTTAATGTTTCGGTCTGTTAA 13383
>seq11738
Length=1031
Score = 87.8 bits (96), Expect = 4e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| ||| ||||||||||||||||||||||| ||||| || || || || || ||||| |
Sbjct 784 ATACTTCTGGATGACCAAAAAATCAGAATAAGTGTTGGTAGAGAATTGGGTCTCCTCCTC 843
Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| || ||||| || || || |||| |||| || |||||
Sbjct 844 CTGTGGGGTCAAAGAATCTTGTGTTAATGTTTCGGTCTGTTAA 886
>seq3255
Length=1186
Score = 87.8 bits (96), Expect = 4e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| ||| ||||||||||||||||||||||| ||||| || || || || || ||||| |
Sbjct 169 ATACTTCTGGATGACCAAAAAATCAGAATAAGTGTTGGTAGAGAATTGGGTCTCCTCCTC 110
Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| || ||||| || || || |||| |||| || |||||
Sbjct 109 CTGTGGGGTCAAAGAATCTTGTGTTAATGTTTCGGTCTGTTAA 67
>seq14185
Length=1273652
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| ||||| ||||| || ||||| || ||||| || ||||||||||| || || |||||
Sbjct 309106 AAGATTTGTCCATCGGTGATAGAAATCACATTGGTCGGGATATAAGCTGATACGTCACCA 309165
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580
||||| ||||||| || || | || || || |||||||| || || ||
Sbjct 309166 GCTTGAGTTTCGATCACGGGCAGAGCAGTGAGGGATCCACCTCCGAATTT 309215
>seq3409
Length=1059
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/104 (79%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAA-TGTTGATAAAGGATAGGATCGCCTCCG 370726
||| ||| |||||||||||||||||||||||| ||||| || || || || || |||||
Sbjct 359 ATACTTCTGGATGACCAAAAAATCAGAATAAAGTGTTGGTAGAGAATTGGGTCTCCTCCT 418
Query 370727 CCTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|||| || ||||| || || || |||| |||| || |||||
Sbjct 419 CCTGTGGGGTCAAAGAATCTTGTGTTAATGTTTCGGTCTGTTAA 462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192305998308866
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