Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 161 8e-35
seq477 147 2e-30
seq13458 141 8e-29
seq13244 140 3e-28
seq12995 111 1e-19
seq13941 102 7e-17
>seq13338
Length=646138
Score = 161 bits (178), Expect = 8e-35
Identities = 242/344 (70%), Gaps = 0/344 (0%)
Strand=Plus/Plus
Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619
|||| ||| | ||||||||||| || | ||||||| ||||| ||||||||||| | |
Sbjct 454011 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 454070
Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679
|| | || || ||||||||||| | || ||||| || |||||||| ||||||||||||
Sbjct 454071 CCGCGTTTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACG 454130
Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAAT 4739
|| ||||| || | | ||| ||||||| | ||||| | ||||| | |
Sbjct 454131 GCCGCAAAAGCGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGA 454190
Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTT 4799
||||| || || || || || || || || | || ||||| || || | ||
Sbjct 454191 GCCCACAACGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTT 454250
Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859
||| | | |||||| || ||||| | ||| | ||||| ||||| || ||||| |||
Sbjct 454251 CTTTTCATCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATA 454310
Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
|| || || ||||| || ||||| ||||| | | |||||| ||
Sbjct 454311 TTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGT 454354
>seq477
Length=28440
Score = 147 bits (162), Expect = 2e-30
Identities = 244/351 (70%), Gaps = 1/351 (0%)
Strand=Plus/Plus
Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612
|||| | |||| ||| | ||||||||||| || | ||||||| ||||| ||||||||
Sbjct 7166 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 7225
Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672
||| | ||| | || || ||||||||||| | || ||||| | |||||||| |||||
Sbjct 7226 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 7285
Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732
||||||||| || || || | | ||| ||||| | | ||||| | |||||
Sbjct 7286 TTCTACGGCCGCGAAAGCGATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCA 7345
Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792
| | ||||| || || || || || || || || | || ||||| || ||
Sbjct 7346 GTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAA 7405
Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852
| | || ||| | | ||| || || ||||| | ||| | ||||| ||||| |||||
Sbjct 7406 ATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGA 7465
Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
|| ||||| || || ||||| || ||||| ||||| | | |||||| ||
Sbjct 7466 ATAGATATTCTCAATCGCAATTTGGAATCCATAAAA-AAACGAGCTTCCGT 7515
>seq13458
Length=7495
Score = 141 bits (156), Expect = 8e-29
Identities = 242/351 (69%), Gaps = 0/351 (0%)
Strand=Plus/Minus
Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612
|||| | |||| ||| | ||||||||||| || | ||||||| ||||| ||||||||
Sbjct 2927 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 2868
Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672
||| | ||| | || || ||||||||||| | || ||||| | |||||||| |||||
Sbjct 2867 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 2808
Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732
||||||||| || | || | | ||| ||||| | | ||||| | |||||
Sbjct 2807 TTCTACGGCCGCGTAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCA 2748
Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792
| | ||||| || || | || || || || || | || ||||| || ||
Sbjct 2747 GTCAAGAGCCCACAACGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAA 2688
Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852
| | || ||| | | ||| || || ||||| | ||| | ||||| ||||| |||||
Sbjct 2687 ATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGA 2628
Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
|| ||||| || || ||||| || ||||| ||||| | | |||||| ||
Sbjct 2627 ATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGT 2577
Score = 122 bits (134), Expect = 7e-23
Identities = 216/315 (69%), Gaps = 0/315 (0%)
Strand=Plus/Minus
Query 4589 TTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGC 4648
||||||| ||||| ||||||||||| | ||| | || || ||||||||||| | ||
Sbjct 6502 TTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCGACGC 6443
Query 4649 AAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAA 4708
||||| | |||||||| |||||||||||||| || || || | | ||| || ||
Sbjct 6442 GAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGCCAAA 6383
Query 4709 CGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGG 4768
| | ||||| | | ||||| | | ||||| || || || || || ||
Sbjct 6382 TGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGG 6323
Query 4769 AATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTC 4828
|| || | || ||||| || || | | || ||| | | ||| || || ||||| |
Sbjct 6322 CATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATT 6263
Query 4829 TATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA 4888
||| | || || ||||| ||||||| ||||| || || ||||| || ||||| |||||
Sbjct 6262 TATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAA 6203
Query 4889 GCATCTAGCTTCTGT 4903
| | |||||| ||
Sbjct 6202 AAAACGAGCTTCCGT 6188
>seq13244
Length=114396
Score = 140 bits (154), Expect = 3e-28
Identities = 241/347 (69%), Gaps = 6/347 (2%)
Strand=Plus/Plus
Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619
|||| ||| | ||||||||||| || | ||||||| ||||| ||||||||||| | |
Sbjct 3485 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 3544
Query 4620 CCTCTCTTTTTAAGCCAAAATATAG-CG----GCAAATGACCCAGAAAAGAATATGCCTT 4674
|| | || || ||||||||||| | || || ||||| || |||||||| |||||||
Sbjct 3545 CCGCGTTTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTT 3604
Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734
||||||| || || || | | ||| ||||| | | ||||| | ||||| |
Sbjct 3605 CTACGGCCGCGAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGT 3664
Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGT-GTATATAGCGTTAAATAAT 4793
| ||||| || || || || || || || || || || | |||||| ||
Sbjct 3665 CAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAA 3724
Query 4794 TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853
| | || ||| | | ||| || || ||||| | ||| | ||||| ||||| ||||||
Sbjct 3725 TAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAA 3784
Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900
| ||||| || || ||||| || ||||| ||||| | | ||||||
Sbjct 3785 TAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 3831
>seq12995
Length=433444
Score = 111 bits (122), Expect = 1e-19
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||||||||||| ||| ||||| || ||||| || || ||||| ||||| |||||||
Sbjct 321916 CTTCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTT 321857
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| | |||||| || |||||||||| || || ||||| || ||||| || || ||||| |
Sbjct 321856 TCAACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATG 321797
Query 4690 CTACTAATC 4698
| |||||||
Sbjct 321796 CGACTAATC 321788
Score = 93.3 bits (102), Expect = 4e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 5031 AAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTAC 5090
||||| ||| | ||||||||||| || |||||||| || || |||| |||||||||||
Sbjct 320826 AAATCATTACTCAAATCAACTTCCTCTACAGTCCAGAAAGAAGCTTGAGCTTTTTTGTAG 320767
Query 5091 ATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134
| ||||||||| ||||||||||||| | || ||||||||
Sbjct 320766 AACTGCCAAATATCTTGATACTGAATCGGGAATAGAACAAATCT 320723
>seq13941
Length=98454
Score = 102 bits (112), Expect = 7e-17
Identities = 244/365 (67%), Gaps = 3/365 (1%)
Strand=Plus/Minus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||| |||||||| |||| ||| || ||||| ||||| ||||| | ||||| ||||
Sbjct 98381 CTTCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTT 98323
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| | |||||| || | || || ||||| || || || || ||||| || || || || |
Sbjct 98322 TCATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAG 98263
Query 4690 CTACTAATCGGGACCCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748
|||| | ||| ||||||| || | ||| || | |||| | | |||||
Sbjct 98262 CTACAACTCGCTCGCCGAACGTCGCCGTCTTGTTCCCGA-TCCAATCGAGCGCCCACAAC 98204
Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAAT 4808
|| || || ||||||||||| || | || || ||||| || | | | | |
Sbjct 98203 GCCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCATC 98144
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
| ||| ||||| || || | || | || || |||||||| || || | || || ||
Sbjct 98143 GAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGATC 98084
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928
||||| ||||||||||| ||| ||||| || | ||| || || | || || ||
Sbjct 98083 ATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCTTGACTGAACCTC 98024
Query 4929 TCTAC 4933
|| ||
Sbjct 98023 TCCAC 98019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426972888413087
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