Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13338 161 8e-35 seq477 147 2e-30 seq13458 141 8e-29 seq13244 140 3e-28 seq12995 111 1e-19 seq13941 102 7e-17 >seq13338 Length=646138 Score = 161 bits (178), Expect = 8e-35 Identities = 242/344 (70%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 |||| ||| | ||||||||||| || | ||||||| ||||| ||||||||||| | | Sbjct 454011 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 454070 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 || | || || ||||||||||| | || ||||| || |||||||| |||||||||||| Sbjct 454071 CCGCGTTTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACG 454130 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 || ||||| || | | ||| ||||||| | ||||| | ||||| | | Sbjct 454131 GCCGCAAAAGCGATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGA 454190 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTT 4799 ||||| || || || || || || || || | || ||||| || || | || Sbjct 454191 GCCCACAACGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTT 454250 Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 ||| | | |||||| || ||||| | ||| | ||||| ||||| || ||||| ||| Sbjct 454251 CTTTTCATCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATA 454310 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || || || ||||| || ||||| ||||| | | |||||| || Sbjct 454311 TTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGT 454354 >seq477 Length=28440 Score = 147 bits (162), Expect = 2e-30 Identities = 244/351 (70%), Gaps = 1/351 (0%) Strand=Plus/Plus Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 |||| | |||| ||| | ||||||||||| || | ||||||| ||||| |||||||| Sbjct 7166 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 7225 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||| | ||| | || || ||||||||||| | || ||||| | |||||||| ||||| Sbjct 7226 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 7285 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 ||||||||| || || || | | ||| ||||| | | ||||| | ||||| Sbjct 7286 TTCTACGGCCGCGAAAGCGATGATTCGTTCGCCGAATGTCGCCGTTTTGTTTCCGATCCA 7345 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 | | ||||| || || || || || || || || | || ||||| || || Sbjct 7346 GTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAA 7405 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | | || ||| | | ||| || || ||||| | ||| | ||||| ||||| ||||| Sbjct 7406 ATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGA 7465 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || ||||| || || ||||| || ||||| ||||| | | |||||| || Sbjct 7466 ATAGATATTCTCAATCGCAATTTGGAATCCATAAAA-AAACGAGCTTCCGT 7515 >seq13458 Length=7495 Score = 141 bits (156), Expect = 8e-29 Identities = 242/351 (69%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 4553 AAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 |||| | |||| ||| | ||||||||||| || | ||||||| ||||| |||||||| Sbjct 2927 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 2868 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||| | ||| | || || ||||||||||| | || ||||| | |||||||| ||||| Sbjct 2867 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 2808 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCA 4732 ||||||||| || | || | | ||| ||||| | | ||||| | ||||| Sbjct 2807 TTCTACGGCCGCGTAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCA 2748 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 | | ||||| || || | || || || || || | || ||||| || || Sbjct 2747 GTCAAGAGCCCACAACGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAACAA 2688 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | | || ||| | | ||| || || ||||| | ||| | ||||| ||||| ||||| Sbjct 2687 ATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGA 2628 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || ||||| || || ||||| || ||||| ||||| | | |||||| || Sbjct 2627 ATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGT 2577 Score = 122 bits (134), Expect = 7e-23 Identities = 216/315 (69%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 4589 TTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGC 4648 ||||||| ||||| ||||||||||| | ||| | || || ||||||||||| | || Sbjct 6502 TTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCGACGC 6443 Query 4649 AAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAA 4708 ||||| | |||||||| |||||||||||||| || || || | | ||| || || Sbjct 6442 GAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGCCAAA 6383 Query 4709 CGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGG 4768 | | ||||| | | ||||| | | ||||| || || || || || || Sbjct 6382 TGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGG 6323 Query 4769 AATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTC 4828 || || | || ||||| || || | | || ||| | | ||| || || ||||| | Sbjct 6322 CATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATCGTGTCCTGGATGTAAGTATT 6263 Query 4829 TATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA 4888 ||| | || || ||||| ||||||| ||||| || || ||||| || ||||| ||||| Sbjct 6262 TATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAA 6203 Query 4889 GCATCTAGCTTCTGT 4903 | | |||||| || Sbjct 6202 AAAACGAGCTTCCGT 6188 >seq13244 Length=114396 Score = 140 bits (154), Expect = 3e-28 Identities = 241/347 (69%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 |||| ||| | ||||||||||| || | ||||||| ||||| ||||||||||| | | Sbjct 3485 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 3544 Query 4620 CCTCTCTTTTTAAGCCAAAATATAG-CG----GCAAATGACCCAGAAAAGAATATGCCTT 4674 || | || || ||||||||||| | || || ||||| || |||||||| ||||||| Sbjct 3545 CCGCGTTTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTT 3604 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734 ||||||| || || || | | ||| ||||| | | ||||| | ||||| | Sbjct 3605 CTACGGCCGCGAAAGCGATGATTCGCTCGCCGAATGTCGCCGTTTTGTTTCCGATCCAGT 3664 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGT-GTATATAGCGTTAAATAAT 4793 | ||||| || || || || || || || || || || | |||||| || Sbjct 3665 CAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAA 3724 Query 4794 TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 | | || ||| | | ||| || || ||||| | ||| | ||||| ||||| |||||| Sbjct 3725 TAATTTCTTTTCATCGTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAA 3784 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 | ||||| || || ||||| || ||||| ||||| | | |||||| Sbjct 3785 TAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 3831 >seq12995 Length=433444 Score = 111 bits (122), Expect = 1e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||||||||||| ||| ||||| || ||||| || || ||||| ||||| ||||||| Sbjct 321916 CTTCGTCTCTGCAAATAAGTTCATTGCTGAACGTCAAACCAGGCATCAAACCCCTCTTTT 321857 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | | |||||| || |||||||||| || || ||||| || ||||| || || ||||| | Sbjct 321856 TCAACCAAAAAATGCCGGCAAATGATCCCGAGAAGAAAATTCCTTCGACCGCTGCAAATG 321797 Query 4690 CTACTAATC 4698 | ||||||| Sbjct 321796 CGACTAATC 321788 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 5031 AAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTAC 5090 ||||| ||| | ||||||||||| || |||||||| || || |||| ||||||||||| Sbjct 320826 AAATCATTACTCAAATCAACTTCCTCTACAGTCCAGAAAGAAGCTTGAGCTTTTTTGTAG 320767 Query 5091 ATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 | ||||||||| ||||||||||||| | || |||||||| Sbjct 320766 AACTGCCAAATATCTTGATACTGAATCGGGAATAGAACAAATCT 320723 >seq13941 Length=98454 Score = 102 bits (112), Expect = 7e-17 Identities = 244/365 (67%), Gaps = 3/365 (1%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| |||| ||| || ||||| ||||| ||||| | ||||| |||| Sbjct 98381 CTTCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTT 98323 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | | |||||| || | || || ||||| || || || || ||||| || || || || | Sbjct 98322 TCATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAG 98263 Query 4690 CTACTAATCGGGACCCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 |||| | ||| ||||||| || | ||| || | |||| | | ||||| Sbjct 98262 CTACAACTCGCTCGCCGAACGTCGCCGTCTTGTTCCCGA-TCCAATCGAGCGCCCACAAC 98204 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAAT 4808 || || || ||||||||||| || | || || ||||| || | | | | | Sbjct 98203 GCCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACAAATGATGTCGCTTCATC 98144 Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 | ||| ||||| || || | || | || || |||||||| || || | || || || Sbjct 98143 GAGTCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCGATC 98084 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 ||||| ||||||||||| ||| ||||| || | ||| || || | || || || Sbjct 98083 ATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTCTTGACTGAACCTC 98024 Query 4929 TCTAC 4933 || || Sbjct 98023 TCCAC 98019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426972888413087