Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13338 214 2e-50 seq477 183 4e-41 seq13458 181 1e-40 seq13244 172 8e-38 seq13941 123 3e-23 seq13827 123 3e-23 seq12995 98.7 1e-15 >seq13338 Length=646138 Score = 214 bits (236), Expect = 2e-50 Identities = 266/359 (74%), Gaps = 9/359 (3%) Strand=Plus/Plus Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212 |||| || | | || ||||| || |||||||||||| || || | |||||||| || Sbjct 454011 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 454070 Query 48213 CCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACG 48272 || ||||| || ||||||||||||| |||||| || || |||||||| |||||||||||| Sbjct 454071 CCGCGTTTCTTTAGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACG 454130 Query 48273 GCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-----ATCCACCGTT 48327 |||||||| ||| | | || ||| ||| ||| | | |||| ||| ||||| Sbjct 454131 GCCGCAAAAGCGATGATTCGCTCGCCG-AAC-GTCGCCGTTTTGTTTCCGATCCAGTCAA 454188 Query 48328 GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 48387 | ||||| |||||||| ||||| ||||| || || || || || || | | ||| Sbjct 454189 GAGCCCACAACGCCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGT 454248 Query 48388 tt-ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGA 48446 || ||||||| | | |||| | |||||||| ||| ||||| || ||||| ||||| || Sbjct 454249 TTCTTTTCATCG-TGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGG 454307 Query 48447 ATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| ||||| || || || ||||| |||||| | | ||||| ||||| | ||||| Sbjct 454308 ATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTC 454366 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/109 (81%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 47837 CATAACTCC-CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTT 47895 |||||| || ||||| | ||||| || || ||||||||| ||||| || ||||| | Sbjct 453565 CATAACCCCGCATTTCGCG-TATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCT 453623 Query 47896 CCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| |||||||| |||||||||||||||||||| | |||||||||| Sbjct 453624 CCAAAGATATATTCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672 >seq477 Length=28440 Score = 183 bits (202), Expect = 4e-41 Identities = 263/366 (72%), Gaps = 10/366 (3%) Strand=Plus/Plus Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 |||| | |||| || | | || ||||| || |||||||||||| || || | ||||| Sbjct 7166 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 7225 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| || || ||||| || ||||||||||| | |||||| || | |||||||| ||||| Sbjct 7226 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 7285 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-----ATC 48320 |||||||||||| || ||| | | || || ||| | || | |||| ||| ||| Sbjct 7286 TTCTACGGCCGCGAAAGCGATGATTCGTTCGCCG--AATGTCGCCGTTTTGTTTCCGATC 7343 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || | ||||| |||||||| ||||||||||| || || || || || || Sbjct 7344 CAGTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAAC 7403 Query 48381 AGA-AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 | | || || ||||||| | | || | | |||||||| ||| ||||| || ||||| || Sbjct 7404 AAATAATTTCTTTTCATCG-TGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTC 7462 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 || | ||||| ||||| || || || ||||| |||||| | | ||||| ||||| | Sbjct 7463 AGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAA-AACGAGCTTCCGTGATTTT 7521 Query 48500 TACCTC 48505 ||||| Sbjct 7522 CACCTC 7527 >seq13458 Length=7495 Score = 181 bits (200), Expect = 1e-40 Identities = 262/366 (72%), Gaps = 9/366 (2%) Strand=Plus/Minus Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 |||| | |||| || | | || ||||| || |||||||||||| || || | ||||| Sbjct 2927 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 2868 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| || || ||||| || ||||||||||| | |||||| || | |||||||| ||||| Sbjct 2867 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 2808 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-----ATC 48320 |||||||||||| | ||| | | || ||| ||| | || | |||| ||| ||| Sbjct 2807 TTCTACGGCCGCGTAAGCGATGATTCGCTCGCCG--AATGTCGCCGTTTTGTTTCCGATC 2750 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || | ||||| |||||| | ||||||||||| || || || || || || Sbjct 2749 CAGTCAAGAGCCCACAACGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAAC 2690 Query 48381 AGA-AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 | | || || ||||||| | | || | | |||||||| ||| ||||| || ||||| || Sbjct 2689 AAATAATTTCTTTTCATCG-TGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTC 2631 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 || | ||||| ||||| || || || ||||| |||||| | | ||||| ||||| | Sbjct 2630 AGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTT 2571 Query 48500 TACCTC 48505 ||||| Sbjct 2570 CACCTC 2565 Score = 178 bits (196), Expect = 2e-39 Identities = 242/334 (72%), Gaps = 9/334 (3%) Strand=Plus/Minus Query 48178 TTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTG 48237 ||||||||||| || || | |||||||| || || ||||| || ||||||||||| | Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447 Query 48238 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTC 48297 |||||| || | |||||||| ||||||||||||||||| || ||| | | || ||| | Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387 Query 48298 CGTAACTGGCTTCGTTGTGT-----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTAC 48352 | || || | |||| ||| ||||| | ||||| |||||||| || Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329 Query 48353 ACAAGGCATTGTTTCTATAGCATTAAAGAGA-AAGtttttttCATTGCTATCTTTAACGT 48411 ||||||||| || || || || || || | | || || ||||||| | | || | | || Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATCG-TGTCCTGGATGT 6270 Query 48412 AAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATC 48471 |||||| ||| |||||||| ||||| || || | ||||| ||||| || || || |||| Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210 Query 48472 CGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 | |||||| | | ||||| ||||| | ||||| Sbjct 6209 CATAAAAAAAACGAGCTTCCGTGATTTTCACCTC 6176 >seq13244 Length=114396 Score = 172 bits (190), Expect = 8e-38 Identities = 269/380 (71%), Gaps = 15/380 (4%) Strand=Plus/Plus Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212 |||| || | | || ||||| || |||||||||||| || || | |||||||| || Sbjct 3485 CAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGA 3544 Query 48213 CCACGTTTTTTGAGCCAAAATAT-----TGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267 || ||||| || ||||||||||| | |||||| || || |||||||| ||||||| Sbjct 3545 CCGCGTTTCTTTAGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTT 3604 Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-----ATCCA 48322 |||||||||| || ||| | | || ||| ||| | || | |||| ||| ||||| Sbjct 3605 CTACGGCCGCGAAAGCGATGATTCGCTCGCCG--AATGTCGCCGTTTTGTTTCCGATCCA 3662 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGT-TTCTATAGCATTAAAGA 48381 | ||||| |||||||| ||||||||||| || || || | ||||| | Sbjct 3663 GTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACA 3722 Query 48382 GA-AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440 | || || ||||||| | | || | | |||||||| ||| ||||| || ||||| || Sbjct 3723 AATAATTTCTTTTCATCG-TGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCA 3781 Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500 || | ||||| ||||| || || || ||||| |||||| | | ||||| |||| | Sbjct 3782 GAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTC 3841 Query 48501 ACCTCCGTACAAAATCGTTC 48520 ||||| || ||| ||||| Sbjct 3842 ACCTCTTGACTAAACCGTTC 3861 >seq13941 Length=98454 Score = 123 bits (136), Expect = 3e-23 Identities = 241/350 (69%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || ||||| || || || | || ||||| || || ||||||| Sbjct 98381 CTTCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCGTTTTT 98322 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | |||||| || | ||||||||| || || || || || ||||| || ||||| || | Sbjct 98321 C-ATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAG 98263 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-----ATCCACCGTTGTGCCCAATC 48337 | || || ||| ||| | | || ||| ||| ||||| | ||||| Sbjct 98262 CTACAACTCGCTCGCCGAACGTCGC--CGTCTTGTTCCCGATCCAATCGAGCGCCCACAA 98205 Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt--ttCA 48395 |||||||| || || || || || || || |||||||| | || | | | |||| Sbjct 98204 CGCCTTCTTACGCACGCACGGAATCGTCTCGATCGCATTAAACA-AATGATGTCGCTTCA 98146 Query 48396 TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCA 48455 | | || | || ||| |||| || |||||||| |||||||| ||||| | || || Sbjct 98145 TCGAG-TCCTGAATGTACGTATTGATCAAAAGACTGTACATTTCCGAGTGCACGTTCTCG 98087 Query 48456 ATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 || ||||| |||||||||||| ||| |||||| || || || ||||| Sbjct 98086 ATCATGATCTGGAATCCGTAAAAAAATCGCGCTTCGGTCATTTGCACCTC 98037 >seq13827 Length=723868 Score = 123 bits (136), Expect = 3e-23 Identities = 154/209 (74%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 ||||| | || ||||| || || || ||| |||| || | ||| || ||||||||||| Sbjct 455325 GATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAAC 455266 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 || |||||||| || ||||||||||| ||||| || | |||||| ||||| ||| || Sbjct 455265 GCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTCG 455206 Query 77475 AACGGA----TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530 |||||| | || |||||| ||| || || || ||||| || || ||||| || || Sbjct 455205 AACGGAAACCTCAT-TAAAAG---AAACGCGTCGGCCAATCCTTGCACCCCAATTCCGAT 455150 Query 77531 AGGTCTATGTCTCTTATTGGAAATTTTAG 77559 ||| | |||| ||||| || | || || Sbjct 455149 AGGACGGTGTCGTTTATTCGATACTTCAG 455121 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089 |||||| |||||| ||| || || | | || || || || |||||||| || | Sbjct 455800 TTGAATCGAACCATTATCAACAATGATCTTCGTTTTGATCTCCTCGTTCCACAAATTGCG 455741 Query 77090 CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149 || |||||| || | | | ||| |||| || ||||| ||||| || || | || | Sbjct 455740 TTCAGTTAAATCTTTTAATAAGTGATGATTGACCATTTGGAATTCGCCCGAAAGAACCCG 455681 Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209 |||||| || || || || || || | ||| | ||||| ||||| || | |||||| || Sbjct 455680 ACGAGTATAGATGTTGCTCGTGTACGCTTCGATCGATTCGTTGTTGCCAAGAATTTGCGC 455621 Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTC 77250 || || ||||||||||| || || | || | ||| |||| Sbjct 455620 GGTTGACGCAGTTGGCATCGGAGCGAGTAAAAGACTGTTTC 455580 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||| |||||||| || |||||||| | | | || ||||| || |||| | Sbjct 456058 TCCACGCGTAAAAATGCATACTGGTCAGTTTTCCAAAGTTCGGCTCGGCAATGTGAAGGT 455999 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||| |||||||| |||||| || ||||||||||| | |||||| || | | | Sbjct 455998 TGAGCGATTGACTTTGGCAGATGAAGGCGCCTCTATCAGCGGACATTTTGATGACAATTT 455939 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | |||||| | | ||| | |||||| |||| Sbjct 455938 TCTGAGAGATTTCCCACACGGTTTTGTACAACGCTTTCAAATCATCCGGAA 455888 >seq12995 Length=433444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 48465 TGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCC 48524 ||||| || |||||||| |||||||||| ||| ||||| ||| || |||| ||| | Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCACT 320997 Query 48525 AAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAA 48584 ||||| ||||| || ||||||||||| || |||||||| || || | || | ||||| Sbjct 320996 AAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAAC 320937 Query 48585 TATTTTTCG 48593 ||||||| Sbjct 320936 ATTTTTTCG 320928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694540815956960