Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 168 1e-36
seq13458 150 3e-31
seq477 150 3e-31
seq13244 141 1e-28
seq13827 127 3e-24
>seq13338
Length=646138
Score = 168 bits (186), Expect = 1e-36
Identities = 263/371 (71%), Gaps = 9/371 (2%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|| ||||| || |||||||||||| || || | || ||||| || || || || ||
Sbjct 454023 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 454082
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||||||||| | |||||| || || |||||||| ||||||||||| ||||| || |||
Sbjct 454083 AGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAGCG 454142
Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATCCACCTTTGAGCCCAATCAG 46828
| | || ||| ||| ||| | | | || || ||||| ||||||| |
Sbjct 454143 ATGATTCGCTCGCCG-AAC-GTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200
Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt-ttttCATCA 46887
|||| || ||||| ||||| || || || || || || | | ||||| ||||||||
Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATC- 454259
Query 46888 CTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATA 46947
| |||| | || |||| ||| ||||| || ||||| || ||||| || || |||||
Sbjct 454260 GTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319
Query 46948 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGT 47007
|| || || ||||| |||||| | | ||||| || || | |||||| || || |||
Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGT 454379
Query 47008 TCAGACAAATT 47018
|| || ||||
Sbjct 454380 TCCAACTAATT 454390
Score = 96.9 bits (106), Expect = 5e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385
|||||| || ||| |||||| || || ||||||||| ||||| || ||||| ||
Sbjct 453565 CATAACCCCGCATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTC 453624
Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAT 46433
||| |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 453625 CAAAGATATATTCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672
>seq13458
Length=7495
Score = 150 bits (166), Expect = 3e-31
Identities = 264/381 (69%), Gaps = 9/381 (2%)
Strand=Plus/Minus
Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694
|||| | |||| || | || ||||| || |||||||||||| || || | || ||
Sbjct 2927 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 2868
Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754
||| || || || || || ||||||||||| | |||||| || | |||||||| |||||
Sbjct 2867 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 2808
Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATC 46809
|||||| |||||| | |||| | || ||| ||| | || | | || || |||
Sbjct 2807 TTCTACGGCCGCGTAAGCGATGATTCGCTCGCCG--AATGTCGCCGTTTTGTTTCCGATC 2750
Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869
|| ||||||| ||||| | ||||||||||| || || || || || ||
Sbjct 2749 CAGTCAAGAGCCCACAACGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAAC 2690
Query 46870 AGA-AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928
| | || || |||||||| | || | | || |||| ||| ||||| || ||||| ||
Sbjct 2689 AAATAATTTCTTTTCATC-GTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTC 2631
Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988
|||| || || ||||| || || || ||||| |||||| | | ||||| || || |
Sbjct 2630 AGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTT 2571
Query 46989 TACCTCTGTACAAAATCGTTC 47009
|||||| || || |||||
Sbjct 2570 CACCTCTTGACTGAACCGTTC 2550
Score = 150 bits (166), Expect = 3e-31
Identities = 245/349 (70%), Gaps = 9/349 (3%)
Strand=Plus/Minus
Query 46667 TTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAG 46726
||||||||||| || || | || ||||| || || || || || ||||||||||| |
Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447
Query 46727 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786
|||||| || | |||||||| ||||||||||| |||||||| |||| | || ||| |
Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387
Query 46787 CGTAACTGGCATCATTATG-----AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTAC 46841
| || || | | || || ||||| ||||||| ||||| || ||
Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329
Query 46842 ACAAGGCATTGTTTCTATAGCATTAAAGAGA-AAGtttttttCATCACTATCTTTAACAT 46900
||||||||| || || || || || || | | || || |||||||| | || | | |
Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATC-GTGTCCTGGATGT 6270
Query 46901 ATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960
| |||| ||| |||||||| ||||| || |||| || || ||||| || || || ||||
Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210
Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
| |||||| | | ||||| || || | |||||| || || |||||
Sbjct 6209 CATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGTTC 6161
>seq477
Length=28440
Score = 150 bits (166), Expect = 3e-31
Identities = 265/381 (70%), Gaps = 10/381 (3%)
Strand=Plus/Plus
Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694
|||| | |||| || | || ||||| || |||||||||||| || || | || ||
Sbjct 7166 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 7225
Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754
||| || || || || || ||||||||||| | |||||| || | |||||||| |||||
Sbjct 7226 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 7285
Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATC 46809
|||||| |||||||| |||| | || || ||| | || | | || || |||
Sbjct 7286 TTCTACGGCCGCGAAAGCGATGATTCGTTCGCCG--AATGTCGCCGTTTTGTTTCCGATC 7343
Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869
|| ||||||| ||||| || ||||||||||| || || || || || ||
Sbjct 7344 CAGTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAAC 7403
Query 46870 AGA-AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928
| | || || |||||||| | || | | || |||| ||| ||||| || ||||| ||
Sbjct 7404 AAATAATTTCTTTTCATC-GTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTC 7462
Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988
|||| || || ||||| || || || ||||| |||||| | | ||||| || || |
Sbjct 7463 AGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAA-AACGAGCTTCCGTGATTTT 7521
Query 46989 TACCTCTGTACAAAATCGTTC 47009
|||||| || || |||||
Sbjct 7522 CACCTCTTGACTGAACCGTTC 7542
>seq13244
Length=114396
Score = 141 bits (156), Expect = 1e-28
Identities = 255/368 (69%), Gaps = 15/368 (4%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|| ||||| || |||||||||||| || || | || ||||| || || || || ||
Sbjct 3497 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 3556
Query 46714 AGCCAAAATATAGCCGCGA-----AAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGA 46768
||||||||||| | ||||| | || || |||||||| ||||||||||| |||||||
Sbjct 3557 AGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCGA 3616
Query 46769 ATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATCCACCTTTGAGCCCA 46823
| |||| | || ||| ||| | || | | || || ||||| |||||||
Sbjct 3617 AAGCGATGATTCGCTCGCCG--AATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674
Query 46824 ATCAGCCTTTTTCTTTACACAAGGCATTGT-TTCTATAGCATTAAAGAGA-AAGtttttt 46881
||||| || ||||||||||| || || || | ||||| | | || || |||
Sbjct 3675 CAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTT 3734
Query 46882 tCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTT 46941
||||| | || | | || |||| ||| ||||| || ||||| || |||| || ||
Sbjct 3735 TCATC-GTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTC 3793
Query 46942 TCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAA 47001
||||| || || || ||||| |||||| | | ||||| | || | |||||| || |
Sbjct 3794 TCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTTGACTA 3853
Query 47002 AATCGTTC 47009
|| |||||
Sbjct 3854 AACCGTTC 3861
>seq13827
Length=723868
Score = 127 bits (140), Expect = 3e-24
Identities = 155/209 (74%), Gaps = 8/209 (4%)
Strand=Plus/Minus
Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009
||||| | || |||||||| | |||||| ||||| || | |||||| ||||| || |||
Sbjct 455325 GATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAAC 455266
Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069
|| |||||||| || ||||||||||| ||||| || | |||||| ||||| ||| ||
Sbjct 455265 GCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTCG 455206
Query 76070 AAAGGA----TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAAT 76125
|| ||| | || |||||| ||| || || || | ||| || || ||||| || ||
Sbjct 455205 AACGGAAACCTCAT-TAAAAG---AAACGCGTCGGCCAATCCTTGCACCCCAATTCCGAT 455150
Query 76126 AGGTCTATGTCTCTTATTGGAAATTTCAG 76154
||| | |||| ||||| || | |||||
Sbjct 455149 AGGACGGTGTCGTTTATTCGATACTTCAG 455121
Score = 100 bits (110), Expect = 4e-16
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 76504 TTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATT 76563
||||||| | | | ||| ||||| ||||||||| || |||| || ||| | || |
Sbjct 454568 TTGTGTAAAGAGC--TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTG 454511
Query 76564 CGGACACATCAATGACCACTCACCATC---TTCCTTAACCCGTTTCATAAAGAGATCAGG 76620
||||||||||| ||||| ||||| |||| || |||||||| || ||||| ||
Sbjct 454510 AGGACACATCAACGACCATATTCCATCGCTTTCC---ACGCGTTTCATGAAAAGATCCGG 454454
Query 76621 TATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTT 76680
||||| || || ||| | || | | || ||| ||||| || || || ||||||||
Sbjct 454453 AATCCAAAGCGCGTAAAACAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTT 454394
Query 76681 AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731
| ||| || || || | | ||| | ||||| || || ||||| |||||
Sbjct 454393 CAAATCGAGAAATTCAAACACATCGGCGTGCCACGGCTCGAGATAAATCGC 454343
Score = 93.3 bits (102), Expect = 6e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| |||| |||||||| || || ||||| | | |||| ||||| || |||| |
Sbjct 456058 TCCACGCGTAAAAATGCATACTGGTCAGTTTTCCAAAGTTCGGCTCGGCAATGTGAAGGT 455999
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
| | ||| |||||||| |||||| || ||||||||||| | |||||| || | | |
Sbjct 455998 TGAGCGATTGACTTTGGCAGATGAAGGCGCCTCTATCAGCGGACATTTTGATGACAATTT 455939
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614
| |||| |||||||| | |||||| | | ||| | |||||| ||||
Sbjct 455938 TCTGAGAGATTTCCCACACGGTTTTGTACAACGCTTTCAAATCATCCGGAA 455888
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936
|| ||||| || || |||| || || || || || |||||| || || || |||||
Sbjct 454077 CCGATTCCCCCCGCGCTTTTCGAAATAAGTGCGCACTGTTTCAGGGTATCGTAAATGCCT 454018
Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996
|| || || ||||| |||| | | ||||| || || |||| ||| || |||| ||
Sbjct 454017 TCGATGCTGTCATCTTTCATCGTCAATAGAAAGCAACTCGACAACTGAGGACGAACTGTG 453958
Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTT 77039
|| | |||||||| || || || || ||||||||||||||||
Sbjct 453957 CCCGAATTAAACAGGGTCGGTGAGGCGTGAGTGAACCATTTTT 453915
Score = 84.2 bits (92), Expect = 3e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 77348 TTTTTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCA 77407
|| |||||||| ||||||| ||| |||| ||| |||| || || || | || |||||
Sbjct 453130 TTCTTTGTTTCTTTGTGTAAATTGGATATGGCGATTCGGGCTGCGAGGACAGCGTAGTCG 453071
Query 77408 GGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTA 77467
||||||| || || | |||||| |||||||||||||| | || ||||| | |||
Sbjct 453070 GGATGTTTCGTCGTCATTGCAGCTGCTGTTTCTGCCGCTAAATTGTCCAATTCGACAGTT 453011
Query 77468 GTAACTCCG 77476
|| || |||
Sbjct 453010 GTTACACCG 453002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712803050748480
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