Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13338 168 1e-36 seq13458 150 3e-31 seq477 150 3e-31 seq13244 141 1e-28 seq13827 127 3e-24 >seq13338 Length=646138 Score = 168 bits (186), Expect = 1e-36 Identities = 263/371 (71%), Gaps = 9/371 (2%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| || |||||||||||| || || | || ||||| || || || || || Sbjct 454023 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 454082 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| | |||||| || || |||||||| ||||||||||| ||||| || ||| Sbjct 454083 AGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAGCG 454142 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATCCACCTTTGAGCCCAATCAG 46828 | | || ||| ||| ||| | | | || || ||||| ||||||| | Sbjct 454143 ATGATTCGCTCGCCG-AAC-GTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACG 454200 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt-ttttCATCA 46887 |||| || ||||| ||||| || || || || || || | | ||||| |||||||| Sbjct 454201 CCTTCTTGCGCACACATGGCATCGTCTCGATCGCGTTGAACAAATAGTTTCTTTTCATC- 454259 Query 46888 CTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATA 46947 | |||| | || |||| ||| ||||| || ||||| || ||||| || || ||||| Sbjct 454260 GTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCAATC 454319 Query 46948 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGT 47007 || || || ||||| |||||| | | ||||| || || | |||||| || || ||| Sbjct 454320 GCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGT 454379 Query 47008 TCAGACAAATT 47018 || || |||| Sbjct 454380 TCCAACTAATT 454390 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || ||| |||||| || || ||||||||| ||||| || ||||| || Sbjct 453565 CATAACCCCGCATTTCGCGTATTCGCCAACTTTTTTCTCGAAGAAATTCGTCTTGCCCTC 453624 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAT 46433 ||| |||||||| |||||||||||||| ||||| |||||||||||| Sbjct 453625 CAAAGATATATTCTCCATAAAATCAAATGGATTTTCAACATTATAAAT 453672 >seq13458 Length=7495 Score = 150 bits (166), Expect = 3e-31 Identities = 264/381 (69%), Gaps = 9/381 (2%) Strand=Plus/Minus Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 |||| | |||| || | || ||||| || |||||||||||| || || | || || Sbjct 2927 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 2868 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || || || || || ||||||||||| | |||||| || | |||||||| ||||| Sbjct 2867 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 2808 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATC 46809 |||||| |||||| | |||| | || ||| ||| | || | | || || ||| Sbjct 2807 TTCTACGGCCGCGTAAGCGATGATTCGCTCGCCG--AATGTCGCCGTTTTGTTTCCGATC 2750 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 || ||||||| ||||| | ||||||||||| || || || || || || Sbjct 2749 CAGTCAAGAGCCCACAACGCCTTCGTGCGCACACAAGGCATCGTCTCGATCGCGTTGAAC 2690 Query 46870 AGA-AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 | | || || |||||||| | || | | || |||| ||| ||||| || ||||| || Sbjct 2689 AAATAATTTCTTTTCATC-GTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTC 2631 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 |||| || || ||||| || || || ||||| |||||| | | ||||| || || | Sbjct 2630 AGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCGTGATTTT 2571 Query 46989 TACCTCTGTACAAAATCGTTC 47009 |||||| || || ||||| Sbjct 2570 CACCTCTTGACTGAACCGTTC 2550 Score = 150 bits (166), Expect = 3e-31 Identities = 245/349 (70%), Gaps = 9/349 (3%) Strand=Plus/Minus Query 46667 TTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAG 46726 ||||||||||| || || | || ||||| || || || || || ||||||||||| | Sbjct 6506 TTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTTAGCCAAAATATCG 6447 Query 46727 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 |||||| || | |||||||| ||||||||||| |||||||| |||| | || ||| | Sbjct 6446 ACGCGAATGAAGCGGAAAAGAAGATGCCTTCTACGGCCGCGAAAGCGATGATTCGCTCGC 6387 Query 46787 CGTAACTGGCATCATTATG-----AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTAC 46841 | || || | | || || ||||| ||||||| ||||| || || Sbjct 6386 C--AAATGTCGCCGTTTTGTTTCTGATCCAGTCAAGAGCCCACAACGCCTTCTTGCGCAC 6329 Query 46842 ACAAGGCATTGTTTCTATAGCATTAAAGAGA-AAGtttttttCATCACTATCTTTAACAT 46900 ||||||||| || || || || || || | | || || |||||||| | || | | | Sbjct 6328 ACAAGGCATCGTCTCGATTGCGTTGAACAAATAATTTCTTTTCATC-GTGTCCTGGATGT 6270 Query 46901 ATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960 | |||| ||| |||||||| ||||| || |||| || || ||||| || || || |||| Sbjct 6269 AAGTATTTATCAAAAGACTGTACATCTCAGAATAGATATTCTCAATCGCAATTTGGAATC 6210 Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 | |||||| | | ||||| || || | |||||| || || ||||| Sbjct 6209 CATAAAAAAAACGAGCTTCCGTGATTTTCACCTCTTGACTGAACCGTTC 6161 >seq477 Length=28440 Score = 150 bits (166), Expect = 3e-31 Identities = 265/381 (70%), Gaps = 10/381 (3%) Strand=Plus/Plus Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 |||| | |||| || | || ||||| || |||||||||||| || || | || || Sbjct 7166 AAAAGCTCAATTAAAAACCTCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGG 7225 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || || || || || ||||||||||| | |||||| || | |||||||| ||||| Sbjct 7226 CATCAGACCGCGTTTCTTTAGCCAAAATATCGACGCGAATGAAGCGGAAAAGAAGATGCC 7285 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATC 46809 |||||| |||||||| |||| | || || ||| | || | | || || ||| Sbjct 7286 TTCTACGGCCGCGAAAGCGATGATTCGTTCGCCG--AATGTCGCCGTTTTGTTTCCGATC 7343 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 || ||||||| ||||| || ||||||||||| || || || || || || Sbjct 7344 CAGTCAAGAGCCCACAACGCCTTCTTGCGCACACAAGGCATCGTCTCGATCGCGTTGAAC 7403 Query 46870 AGA-AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 | | || || |||||||| | || | | || |||| ||| ||||| || ||||| || Sbjct 7404 AAATAATTTCTTTTCATC-GTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTC 7462 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 |||| || || ||||| || || || ||||| |||||| | | ||||| || || | Sbjct 7463 AGAATAGATATTCTCAATCGCAATTTGGAATCCATAAAAA-AACGAGCTTCCGTGATTTT 7521 Query 46989 TACCTCTGTACAAAATCGTTC 47009 |||||| || || ||||| Sbjct 7522 CACCTCTTGACTGAACCGTTC 7542 >seq13244 Length=114396 Score = 141 bits (156), Expect = 1e-28 Identities = 255/368 (69%), Gaps = 15/368 (4%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| || |||||||||||| || || | || ||||| || || || || || Sbjct 3497 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 3556 Query 46714 AGCCAAAATATAGCCGCGA-----AAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGA 46768 ||||||||||| | ||||| | || || |||||||| ||||||||||| ||||||| Sbjct 3557 AGCCAAAATATCGACGCGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCGA 3616 Query 46769 ATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATCCACCTTTGAGCCCA 46823 | |||| | || ||| ||| | || | | || || ||||| ||||||| Sbjct 3617 AAGCGATGATTCGCTCGCCG--AATGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCA 3674 Query 46824 ATCAGCCTTTTTCTTTACACAAGGCATTGT-TTCTATAGCATTAAAGAGA-AAGtttttt 46881 ||||| || ||||||||||| || || || | ||||| | | || || ||| Sbjct 3675 CAACGCCTTCTTGCGCACACAAGGCATCGTCTTAAATCGTGTTAAACAAATAATTTCTTT 3734 Query 46882 tCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTT 46941 ||||| | || | | || |||| ||| ||||| || ||||| || |||| || || Sbjct 3735 TCATC-GTGTCCTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCAGAATAGATATTC 3793 Query 46942 TCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAA 47001 ||||| || || || ||||| |||||| | | ||||| | || | |||||| || | Sbjct 3794 TCAATCGCAATTTGGAATCCATAAAAAAAACGAGCTTCCATGATTTTCACCTCTTGACTA 3853 Query 47002 AATCGTTC 47009 || ||||| Sbjct 3854 AACCGTTC 3861 >seq13827 Length=723868 Score = 127 bits (140), Expect = 3e-24 Identities = 155/209 (74%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 ||||| | || |||||||| | |||||| ||||| || | |||||| ||||| || ||| Sbjct 455325 GATCCCTCGTACGTTTCGTACGGCCCGTCTTTTTCGGCCAATTCGCAGCTCGCTTCCAAC 455266 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || |||||||| || ||||||||||| ||||| || | |||||| ||||| ||| || Sbjct 455265 GCGCCGTAATACATGGTTTCGAAAATTTTCTTGTTTAAATCTTGAGCTTCTTCACTGTCG 455206 Query 76070 AAAGGA----TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAAT 76125 || ||| | || |||||| ||| || || || | ||| || || ||||| || || Sbjct 455205 AACGGAAACCTCAT-TAAAAG---AAACGCGTCGGCCAATCCTTGCACCCCAATTCCGAT 455150 Query 76126 AGGTCTATGTCTCTTATTGGAAATTTCAG 76154 ||| | |||| ||||| || | ||||| Sbjct 455149 AGGACGGTGTCGTTTATTCGATACTTCAG 455121 Score = 100 bits (110), Expect = 4e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 76504 TTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATT 76563 ||||||| | | | ||| ||||| ||||||||| || |||| || ||| | || | Sbjct 454568 TTGTGTAAAGAGC--TTCGAATTCTTCTCCCCAACAGTCCGCCAATCCGGGAGACTCGTG 454511 Query 76564 CGGACACATCAATGACCACTCACCATC---TTCCTTAACCCGTTTCATAAAGAGATCAGG 76620 ||||||||||| ||||| ||||| |||| || |||||||| || ||||| || Sbjct 454510 AGGACACATCAACGACCATATTCCATCGCTTTCC---ACGCGTTTCATGAAAAGATCCGG 454454 Query 76621 TATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTT 76680 ||||| || || ||| | || | | || ||| ||||| || || || |||||||| Sbjct 454453 AATCCAAAGCGCGTAAAACAATTCCCTCGCTCGACGCTCTTCTTTCCCCGTGTTCTTTTT 454394 Query 76681 AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 | ||| || || || | | ||| | ||||| || || ||||| ||||| Sbjct 454393 CAAATCGAGAAATTCAAACACATCGGCGTGCCACGGCTCGAGATAAATCGC 454343 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||| |||||||| || || ||||| | | |||| ||||| || |||| | Sbjct 456058 TCCACGCGTAAAAATGCATACTGGTCAGTTTTCCAAAGTTCGGCTCGGCAATGTGAAGGT 455999 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||| |||||||| |||||| || ||||||||||| | |||||| || | | | Sbjct 455998 TGAGCGATTGACTTTGGCAGATGAAGGCGCCTCTATCAGCGGACATTTTGATGACAATTT 455939 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | |||||| | | ||| | |||||| |||| Sbjct 455938 TCTGAGAGATTTCCCACACGGTTTTGTACAACGCTTTCAAATCATCCGGAA 455888 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 || ||||| || || |||| || || || || || |||||| || || || ||||| Sbjct 454077 CCGATTCCCCCCGCGCTTTTCGAAATAAGTGCGCACTGTTTCAGGGTATCGTAAATGCCT 454018 Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 || || || ||||| |||| | | ||||| || || |||| ||| || |||| || Sbjct 454017 TCGATGCTGTCATCTTTCATCGTCAATAGAAAGCAACTCGACAACTGAGGACGAACTGTG 453958 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTT 77039 || | |||||||| || || || || |||||||||||||||| Sbjct 453957 CCCGAATTAAACAGGGTCGGTGAGGCGTGAGTGAACCATTTTT 453915 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 77348 TTTTTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCA 77407 || |||||||| ||||||| ||| |||| ||| |||| || || || | || ||||| Sbjct 453130 TTCTTTGTTTCTTTGTGTAAATTGGATATGGCGATTCGGGCTGCGAGGACAGCGTAGTCG 453071 Query 77408 GGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTA 77467 ||||||| || || | |||||| |||||||||||||| | || ||||| | ||| Sbjct 453070 GGATGTTTCGTCGTCATTGCAGCTGCTGTTTCTGCCGCTAAATTGTCCAATTCGACAGTT 453011 Query 77468 GTAACTCCG 77476 || || ||| Sbjct 453010 GTTACACCG 453002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712803050748480