Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq12471 118 2e-21 seq13894 113 1e-19 >seq12471 Length=105862 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 ||||| || | ||||| || || ||||| || |||||||| ||| |||||| | ||| Sbjct 72381 CTGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGCTTAAAGTGCGGCCA 72440 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || | ||| ||||| || || || | ||| || || | | |||||||||||| Sbjct 72441 TCCTCCAACTGTTTACCGGCAAAAATCAGACGCTGTTGATCGGGTGGGATTCCTTCCTTA 72500 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||||||||| ||| ||| |||| | |||| ||| ||||| |||||||| Sbjct 72501 TCTTGAATTTTAGCTTTTACATTCTCGATCGTGTCGCTTGGCTCAACTTCGAGAGTAATG 72560 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || |||| |||||| Sbjct 72561 GTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 72595 Score = 105 bits (116), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || ||||| || |||||||| ||| ||||| | |||||||| | Sbjct 73424 CAAG-TGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTCCA 73482 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | | ||| || || | | || ||||| || ||||| | Sbjct 73483 ATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTGGA 73542 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || ||| ||| |||| | | | || ||| ||| ||||| | ||||| |||| Sbjct 73543 TCTTGGCTTTCACATTCTCAATGGTATC---ACTTGGCTCGACTTCCAAGGTAATGGTTT 73599 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||| || || ||||||| ||||||| Sbjct 73600 TTCCAGTGAGTGTTTTGACGAAGATCTGCATT 73631 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 ||||| || | ||||| || || ||||| ||||||||||||||| | || | ||| Sbjct 73126 CTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCA 73185 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| | ||| || ||||| || | | ||| || |||| | || ||||| || Sbjct 73186 TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTG 73245 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| || ||| ||| |||| | |||| ||| ||||| || |||||| Sbjct 73246 TCTTGAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATA 73305 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || || || || | |||||| Sbjct 73306 GTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAA-AGTTCTCCCATCTTCTAGGC 151959 |||||| || || ||||| || ||||||||||| ||||| || | |||||||| || Sbjct 72909 ATGAAGCGTTGATTCTTTCTGAATGTTGTAATC-GCTAAGTGTGCGACCATCTTCGAGTT 72967 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 |||||| || ||||| || | ||| || || | | ||| ||||| || ||||| || | Sbjct 72968 GTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGGATCT 73027 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | ||||||| | || | |||| | ||| ||||| | || || || ||||| | Sbjct 73028 TGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTCTTGCCAG 73087 Query 152080 TGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || ||||||| ||||| Sbjct 73088 TCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||||||| || || | ||||| || | Sbjct 72161 CAAG-TGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGACCATCCTCGA 72219 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | | ||| ||||| | || ||||| || || ||||| | Sbjct 72220 GTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCTTTGTCTTGGA 72279 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| | || | | |||| ||| ||| ||||| | || || || | Sbjct 72280 TCTTAGCCTTGACATTTTCAATGGTGTC---ACTTGGCTCGACTTCCAATGTGATGGTCT 72336 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || || || |||| |||||| Sbjct 72337 TGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| ||||| || || |||||||||||||||||| || || | ||||| Sbjct 72611 GAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATCGCTCAATGTACGACCATC 72670 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||| || ||||| || | | ||| || |||| | ||| || || || || Sbjct 72671 TTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGGATCCCCTCTTTATC 72730 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || ||||||| | || | |||| | || || || | ||| || || Sbjct 72731 TTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTCAACCTCTAAAGTGATGGT 72790 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| ||||| Sbjct 72791 CTTGCCAGTCAAGGTCTTAACGAAGATTTGCAT 72823 >seq13894 Length=1211295 Score = 113 bits (124), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTT-TGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 || ||||||||||| || || || ||| |||||||||||||| | || |||| ||||| Sbjct 231733 AGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAATCTGACAAGGTTCGGCCATC 231792 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| ||||| ||||| | | |||||| |||| | || ||||| || || Sbjct 231793 TTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCTTCTTTGTC 231852 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| || || | || | | || ||| || |||||||| || || || Sbjct 231853 TTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGTTCGACTTCAAGCGTGATGGT 231912 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||| |||||||| | ||||||| Sbjct 231913 CTTCCCAGTTAAAGTTTTCACGAAAATCTGCATT 231946 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || |||||||| |||||||||||||||| || || | |||||| Sbjct 231962 AGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATCGGACAAGGTCCGGCCATCT 232021 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || |||||||| | | ||||| || | | ||| || || || | Sbjct 232022 TCCAATTGCTTT--CCCGCGAAGATCAATCGTTGCTGATCTGGTGGGATGCCCTCTTTGT 232079 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| ||||| || || | || | | ||||||| || ||||| | ||| || | Sbjct 232080 CTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATGG 232139 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || | || ||||| || | |||||| Sbjct 232140 TTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Score = 100 bits (110), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GG 151958 ||| ||||| || || || |||||||||||||||| || |||| |||||||| | | Sbjct 231513 ATGCAGAGTCGATTCCTTCTGGATGTTGTAATCGGACAAGGTTCGGCCATCTTCCAATTG 231572 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| || || || || | | || ||||| | | ||| ||||| || || || ||| Sbjct 231573 CTTT--CCCGCAAAAATTAAACGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATT 231630 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || |||||| |||| | | |||| || || ||||| || ||||| || || || Sbjct 231631 TTCGCCTTGACATTCTCAATGGTGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCG 231690 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || | ||| |||||||| | |||||| Sbjct 231691 GTTAAAGTTTTCACGAAAATCTGCAT 231716 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || |||||||| || || || || ||||||||||| |||| ||| |||| |||||||| Sbjct 232193 ACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGATAAGGTTCGGCCATCTTCC 232252 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || || || | | ||||| |||| | ||| ||||| || || || Sbjct 232253 AATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCCGGTGGGATACCTTCTTTATCCTGG 232312 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| || || | || | | || ||| ||| ||||| ||||| || || || Sbjct 232313 ATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGCTCGACTTCGAGAGTTATGGTCTTA 232372 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || | || ||||| || | ||||||||| Sbjct 232373 CCGGTTAAGGTTTTCACAAAAATCTGCATTTT 232404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153602908513869