Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq13894 104 2e-17
seq12471 89.7 4e-13
>seq13894
Length=1211295
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||| || ||||| || ||||| || ||||||||| | ||| |||||
Sbjct 231716 ATGCAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCG 231657
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | ||| | || || ||||| |||||||||||| | || ||| |||
Sbjct 231656 GACACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAA 231597
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | |||| |||||| || |||||||||||| ||| || ||||||| ||
Sbjct 231596 CAACGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAACCTTGTCCGATTACAAC 231537
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || || ||||| || || ||||| || ||||| || | |||||
Sbjct 231536 ATCCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGAGGTGG 231490
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156
|||||||| |||||||| ||||| || ||||| || ||||| || | ||| || ||
Sbjct 232404 AAAATGCAGATTTTTGTGAAAACCTTAACCGGTAAGACCATAACTCTCGAAGTCGAGCCT 232345
Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216
|||| | ||| | || || ||||| || |||||||| | || |||
Sbjct 232344 TCCGATACGATTGAAAACGTGAAGGCGAAAATCCAGGATAAAGAAGGTATCCCACCGGAT 232285
Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276
|| ||| | | |||| ||||||||| |||||||||||| ||| | |||| ||
Sbjct 232284 CAGCAACGATTAATTTTTGCGGGCAAGCAATTGGAAGATGGCCGAACCTTATCCGACTAC 232225
Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGT 111315
|| || || || ||||| || || ||| | || ||||||
Sbjct 232224 AACATCCAGAAGGAATCGACCCTTCATCTGGTATTGCGT 232186
>seq12471
Length=105862
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| |||||||||||||| | || || ||||| ||||| | ||| || || |||
Sbjct 73340 ATGCAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC 73281
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| || | | | |||||| || ||| ||||||||||| |||| ||||||
Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277
|| | | |||| || || ||||||||||||||| | | ||| | |||||| |
Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAG--CGATTACA 73163
Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTG 111309
| || || |||||||| || || || || |||
Sbjct 73162 ACATCCAGAAAGAATCGACGCTTCACTTGGTG 73131
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
|||||| || || |||||||| | || || |||||||||||| ||||| || || ||
Sbjct 73631 AATGCAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGCCAAG 73572
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
||| | ||| | || ||| || || ||||||||||| |||| |||||
Sbjct 73571 TGATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCA 73512
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
||| | | || | || || ||||||||||||||| | ||| || ||| || ||
Sbjct 73511 ACAGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAA 73452
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTG 111309
|| || |||||||| || || || || |||
Sbjct 73451 CATTCAGAAAGAATCAACTCTTCACTTGGTG 73421
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/218 (70%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| || |||||||| |||| ||||| ||||| || ||||| || || ||
Sbjct 73112 ATGCAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGAGCCTAGT 73053
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218
|| || | | | || ||| || || ||||||||||| | |||| | |||||
Sbjct 73052 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGG-GATCCCACCAGATCA 72994
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111276
||| | || || | ||| || |||||| | |||||| || | ||| | ||||||
Sbjct 72993 ACAGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAG--CGATTAC 72936
Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCG 111314
|| || || |||||||| || || ||||| || || ||
Sbjct 72935 AACATTCAGAAAGAATCAACGCTTCATTTGGTTTTACG 72898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421735429395064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |