Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq13338 93.3 4e-14 seq12995 89.7 5e-13 seq13941 84.2 2e-11 >seq13338 Length=646138 Score = 93.3 bits (102), Expect = 4e-14 Identities = 224/335 (67%), Gaps = 12/335 (4%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || || || ||||| ||| || || ||||| ||||| | || ||||| || Sbjct 454023 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 454082 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||||| || ||||| ||||||||||| || || || || |||||||| || Sbjct 454083 AGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAGCG 454142 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 | | || || || || || | | | ||||| | | ||| ||| Sbjct 454143 ATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCC 454202 Query 23713 TTCAATTTTACACACTCA----ATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTC 23768 ||| || | ||| || || || || || || || || | || ||||| || ||| Sbjct 454203 TTC----TTGCGCACACATGGCATCGTCTCGATCGCGTTGAACA-AATAGTTTCTT-TTC 454256 Query 23769 AT--TATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCA 23826 || | ||| || || |||| || | | || ||||| || ||||| ||||| ||| Sbjct 454257 ATCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCA 454316 Query 23827 ATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || ||||| || || ||||||||| | | |||||| Sbjct 454317 ATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 454351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 23199 ACTATTCATAACACC-CATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCT 23257 || ||||||||| || ||||| | ||||| ||||| | | ||||| ||||| |||| Sbjct 453559 ACGATTCATAACCCCGCATTTCGCG-TATTCGCCAACTTTTTTCTCGAAGAAATTCGTCT 453617 Query 23258 TACCCTCTAATGATATATTTTCCATAAAATCAAATGGATT 23297 | ||||| || |||||||| |||||||||||||||||||| Sbjct 453618 TGCCCTCCAAAGATATATTCTCCATAAAATCAAATGGATT 453657 >seq12995 Length=433444 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23836 TGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCT 23895 ||||||||||||||||| || ||||| | | ||| || || | | ||||||| || Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCACT 320997 Query 23896 AAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAA 23954 |||||||| |||||||| |||||||| || ||||| ||||| | || | ||||||| Sbjct 320996 AAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAA 320938 >seq13941 Length=98454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || ||||||||||| || || ||||| ||||| | ||||| |||| Sbjct 98381 CTTCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTT 98323 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | |||||||| || | || || || || || || ||||| || ||||| ||||| || | Sbjct 98322 TCATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAG 98263 Query 23651 CCACAA 23656 | |||| Sbjct 98262 CTACAA 98257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521391922354600