Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq13338 93.3 4e-14
seq12995 89.7 5e-13
seq13941 84.2 2e-11
>seq13338
Length=646138
Score = 93.3 bits (102), Expect = 4e-14
Identities = 224/335 (67%), Gaps = 12/335 (4%)
Strand=Plus/Plus
Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592
|| || || || || ||||| ||| || || ||||| ||||| | || ||||| ||
Sbjct 454023 TCGTCTCTGCTGATTAATTCGTTACTGAACGTCAATCCGGGCATCAGACCGCGTTTCTTT 454082
Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652
| ||||||||||| || ||||| ||||||||||| || || || || |||||||| ||
Sbjct 454083 AGCCAAAATATTGACGCGAATGAACCGGAAAAGAAGATGCCTTCTACGGCCGCAAAAGCG 454142
Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712
| | || || || || || | | | ||||| | | ||| |||
Sbjct 454143 ATGATTCGCTCGCCGAACGTCGCCGTTTTGTTTCCGATCCAGTCAAGAGCCCACAACGCC 454202
Query 23713 TTCAATTTTACACACTCA----ATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTC 23768
||| || | ||| || || || || || || || || | || ||||| || |||
Sbjct 454203 TTC----TTGCGCACACATGGCATCGTCTCGATCGCGTTGAACA-AATAGTTTCTT-TTC 454256
Query 23769 AT--TATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCA 23826
|| | ||| || || |||| || | | || ||||| || ||||| ||||| |||
Sbjct 454257 ATCGTGTCTTGGATGTAAGTATTTATCAAAAGGCTGTACATCTCGGAATGGATATTCTCA 454316
Query 23827 ATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861
|| ||||| || || ||||||||| | | ||||||
Sbjct 454317 ATCGCAATTTGGAATCCATAAAAAAAACGAGCTTC 454351
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/100 (81%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 23199 ACTATTCATAACACC-CATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCT 23257
|| ||||||||| || ||||| | ||||| ||||| | | ||||| ||||| ||||
Sbjct 453559 ACGATTCATAACCCCGCATTTCGCG-TATTCGCCAACTTTTTTCTCGAAGAAATTCGTCT 453617
Query 23258 TACCCTCTAATGATATATTTTCCATAAAATCAAATGGATT 23297
| ||||| || |||||||| ||||||||||||||||||||
Sbjct 453618 TGCCCTCCAAAGATATATTCTCCATAAAATCAAATGGATT 453657
>seq12995
Length=433444
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 23836 TGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCT 23895
||||||||||||||||| || ||||| | | ||| || || | | ||||||| ||
Sbjct 321056 TGAAACCCATAAAAACACCTCGCTTCTGGGATTTGTACTTCCTGACTGAATCTTTCCACT 320997
Query 23896 AAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAA 23954
|||||||| |||||||| |||||||| || ||||| ||||| | || | |||||||
Sbjct 320996 AAATTTTCATTAACAATTCCATCACTCGCCGCAAAAAAAGCCAAAATTTGACTTATAAA 320938
>seq13941
Length=98454
Score = 84.2 bits (92), Expect = 2e-11
Identities = 95/126 (75%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590
||||||| || || ||||||||||| || || ||||| ||||| | ||||| ||||
Sbjct 98381 CTTCATCTCTGCTGATCAATTCATTGCTGAACGTCAATCCAGGCATGAGACCTCG-TTTT 98323
Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650
| |||||||| || | || || || || || || ||||| || ||||| ||||| || |
Sbjct 98322 TCATCCAAAAAATCGACGCGAAAGACCCCGAGAAAAAAATCCCTTCAACCGCCGCGAAAG 98263
Query 23651 CCACAA 23656
| ||||
Sbjct 98262 CTACAA 98257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521391922354600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |