Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq12471 129 4e-25 seq13894 116 3e-21 >seq12471 Length=105862 Score = 129 bits (142), Expect = 4e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || ||||| |||| || | || || || ||||||||||| || Sbjct 73628 CATTCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC 73687 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| || || || ||||| ||||| ||||| | Sbjct 73688 GCTAAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGG 73747 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| |||| | |||| | || |||||| | | Sbjct 73748 AGGAATTCCTTCCTTATCCTGAATCTTGGCCTTC-ACGTTCTCGATCGTGTCGCTTGGCT 73806 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||||||| ||||| || ||||| |||||||| || || || || |||||||| Sbjct 73807 CCACCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGAT 73861 Score = 114 bits (126), Expect = 9e-21 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| || | ||||| ||||||||| || || ||||||||||| Sbjct 73107 TTGCATACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTA 73166 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| |||| ||| | || |||| || || || || || ||||||||||| ||||| Sbjct 73167 ATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATC 73226 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | ||||| || || ||||| |||| | ||| | || |||||| | Sbjct 73227 CGGAGGAATCCCTTCTTTGTCTTGAATCTT-GGCTTTTACATTCTCGATAGTGTCGCTTG 73285 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | |||||| || ||||| |||||||| || || || || ||||| Sbjct 73286 GCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 || ||||| |||| ||| |||||| |||||||||||||||||||||| | | ||| Sbjct 72150 AGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGA 72209 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || || || || || ||||||||||| ||||| || || | || | || || Sbjct 72210 CCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCT 72269 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || ||||| ||| | || | |||||||| | || || |||| || Sbjct 72270 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTG 72329 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || ||||| || || ||||| ||||| Sbjct 72330 ATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || |||| |||||||| || || || |||||||||||| ||| ||| | || Sbjct 72901 AAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCT 72960 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || || || ||||| |||||||| | |||||| ||||||| || | ||||| || || Sbjct 72961 TCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCT 73020 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| || | || | || ||||| | || || |||| ||| || ||| Sbjct 73021 TGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTC 73080 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || |||||||||||||| Sbjct 73081 TTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | | |||| || || ||| |||||||||||||||||||| Sbjct 72593 CATACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATC 72652 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | || | || |||| || || || || || ||||||||||| ||||| | Sbjct 72653 GCTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGG 72712 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || || || || ||||| || | || | || ||||| | ||| Sbjct 72713 AGGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTC 72772 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || | |||||| ||||||||||||||| Sbjct 72773 AACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || || || || |||||||| ||| | ||| | || || Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 73480 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || ||||| |||||||||||||| ||||||| ||| | ||||| || || Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | ||| | ||||| || | || || |||| ||||| || | Sbjct 73541 GATCTT-GGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTT 73599 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||| || || |||||||| ||||| Sbjct 73600 TTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630 >seq13894 Length=1211295 Score = 116 bits (128), Expect = 3e-21 Identities = 168/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTT-TGGATGTTGTAAT 44165 ||| || ||||||| | || ||| || ||||| || |||||| ||||||||||||| Sbjct 231714 CATACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAAT 231773 Query 44166 CGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | | | || | || | || ||||| || || |||||||||||||||||||||||||| Sbjct 231774 CTGACAAGGTTCGGC-CATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCC 231832 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | ||||| || || || ||| ||||| || | || || |||| | | Sbjct 231833 GGAGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGT 231892 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||| || ||||| || || | || |||||||| || ||||| Sbjct 231893 TCGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945 Score = 105 bits (116), Expect = 5e-18 Identities = 172/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 44097 ATTTTTA--TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTG 44154 ||||||| || |||||| ||||||| || ||| |||| || || || ||||| || Sbjct 231474 ATTTTTAAATTACATTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTG 231533 Query 44155 GATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAAC 44213 |||||||||||||| | || | || | || |||| ||||| || ||||| || |||| Sbjct 231534 GATGTTGTAATCGGACAAGGT-TCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAAC 231592 Query 44214 GCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGG 44273 | || || || | || | ||||| || ||| || ||| ||| | | | |||| Sbjct 231593 GTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGG 231652 Query 44274 TGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333 |||| | | ||| || || | ||||| |||||||| || | || |||||||| || | Sbjct 231653 TGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCT 231712 Query 44334 GCAT 44337 |||| Sbjct 231713 GCAT 231716 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||||| | || || || ||||| || ||| || |||||||||||||| Sbjct 231943 CATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATC 232002 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | || | || |||| ||||| || || |||||||| || |||||||||| Sbjct 232003 GGACAAGGT-CCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTG 232061 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || || || || || ||| ||| | || | |||||||| | | || Sbjct 232062 GTGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTT 232121 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || || ||||| || | ||| ||||| || || ||||| Sbjct 232122 CGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | | ||| ||||| ||||| || ||||| ||||||||||| || Sbjct 232171 CATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTC 232230 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || | ||| || | || |||| ||||| || ||||| || || || |||||||| Sbjct 232231 GGATAAGGTT--CGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCC 232288 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||| || ||| || ||| ||||| || | || || |||| | Sbjct 232289 GGTGGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGC 232348 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || ||||| || || | ||| ||||| || || ||||| Sbjct 232349 TCGACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359925734361963