Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 129 4e-25
seq13894 116 3e-21
>seq12471
Length=105862
Score = 129 bits (142), Expect = 4e-25
Identities = 171/235 (73%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| |||| || ||||| |||| || | || || || ||||||||||| ||
Sbjct 73628 CATTCCTCCTCGCAACCTCAATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTC 73687
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| ||| ||| |||| || |||||||| || || || ||||| ||||| ||||| |
Sbjct 73688 GCTAAGTGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGG 73747
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
||| | |||||||| ||| ||||| |||| | |||| | || |||||| | |
Sbjct 73748 AGGAATTCCTTCCTTATCCTGAATCTTGGCCTTC-ACGTTCTCGATCGTGTCGCTTGGCT 73806
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
||||||||| ||||| || ||||| |||||||| || || || || ||||||||
Sbjct 73807 CCACCTCCAAAGTAATAGTTTTTCCAGTGAGGGTTTTAACAAAAATCTGCATGAT 73861
Score = 114 bits (126), Expect = 9e-21
Identities = 168/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| || | ||||| ||||||||| || || |||||||||||
Sbjct 73107 TTGCATACCGCCTCTCAACCTGAGCACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTA 73166
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| |||| ||| | || |||| || || || || || ||||||||||| |||||
Sbjct 73167 ATCGCTGAGTGTGCGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATC 73226
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282
| ||| | ||||| || || ||||| |||| | ||| | || |||||| |
Sbjct 73227 CGGAGGAATCCCTTCTTTGTCTTGAATCTT-GGCTTTTACATTCTCGATAGTGTCGCTTG 73285
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || | |||||| || ||||| |||||||| || || || || |||||
Sbjct 73286 GCTCAACTTCGAGCGTAATAGTTTTTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
|| ||||| |||| ||| |||||| |||||||||||||||||||||| | | |||
Sbjct 72150 AGCCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAATCGCTCAATGTGCGA 72209
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || || || || || || ||||||||||| ||||| || || | || | || ||
Sbjct 72210 CCATCCTCGAGTTGTTTACCAGCAAAGATCAATCGCTGTTGGTCGGGCGGAATTCCCTCT 72269
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| || ||||| ||| | || | |||||||| | || || |||| ||
Sbjct 72270 TTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTTGGCTCGACTTCCAATGTG 72329
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| || || ||||| || || ||||| |||||
Sbjct 72330 ATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 72367
Score = 95.1 bits (104), Expect = 9e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185
|| |||| |||||||| || || || |||||||||||| ||| ||| | ||
Sbjct 72901 AAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCATCT 72960
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|| || || ||||| |||||||| | |||||| ||||||| || | ||||| || ||
Sbjct 72961 TCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCTTCTTTGTCT 73020
Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| || | || | || ||||| | || || |||| ||| || |||
Sbjct 73021 TGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGATGGTC 73080
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||||| || ||||||||||||||
Sbjct 73081 TTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||||| | | |||| || || ||| ||||||||||||||||||||
Sbjct 72593 CATACCACCTCTCAACCGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTGTAATC 72652
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| | | || | || |||| || || || || || ||||||||||| ||||| |
Sbjct 72653 GCTCAATGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGG 72712
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | || || || || ||||| || | || | || ||||| | |||
Sbjct 72713 AGGGATCCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCGATCGTGTCACTAGGTTC 72772
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||||| | || || ||||| || || | |||||| |||||||||||||||
Sbjct 72773 AACCTCTAAAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATTTGCATG 72824
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| || || || || |||||||| ||| | ||| | || ||
Sbjct 73421 CACCAAGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCTTC 73480
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| || || ||||| |||||||||||||| ||||||| ||| | ||||| || ||
Sbjct 73481 CAATTGTTTACCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATCCCTTCTTTGTCTTG 73540
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| |||| | ||| | ||||| || | || || |||| ||||| || |
Sbjct 73541 GATCTT-GGCTTTCACATTCTCAATGGTATCACTTGGCTCGACTTCCAAGGTAATGGTTT 73599
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| ||||| || || |||||||| |||||
Sbjct 73600 TTCCAGTGAGTGTTTTGACGAAGATCTGCAT 73630
>seq13894
Length=1211295
Score = 116 bits (128), Expect = 3e-21
Identities = 168/233 (72%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTT-TGGATGTTGTAAT 44165
||| || ||||||| | || ||| || ||||| || |||||| |||||||||||||
Sbjct 231714 CATACCGCCTCTCAAACGCAGCACAAGATGAAGGGTCGATTCCTTTCTGGATGTTGTAAT 231773
Query 44166 CGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
| | | || | || | || ||||| || || ||||||||||||||||||||||||||
Sbjct 231774 CTGACAAGGTTCGGC-CATCTTCCAGTTGTTTACCGGCAAAGATCAAACGCTGCTGATCC 231832
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284
| ||| | ||||| || || || ||| ||||| || | || || |||| | |
Sbjct 231833 GGAGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTCACGTTTTCGATTGTATCGGAAGGT 231892
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || | ||| || ||||| || || | || |||||||| || |||||
Sbjct 231893 TCGACTTCAAGCGTGATGGTCTTCCCAGTTAAAGTTTTCACGAAAATCTGCAT 231945
Score = 105 bits (116), Expect = 5e-18
Identities = 172/244 (70%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 44097 ATTTTTA--TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTG 44154
||||||| || |||||| ||||||| || ||| |||| || || || ||||| ||
Sbjct 231474 ATTTTTAAATTACATTCCACCTCTCAATCGCAAAACCAAATGCAGAGTCGATTCCTTCTG 231533
Query 44155 GATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAAC 44213
|||||||||||||| | || | || | || |||| ||||| || ||||| || ||||
Sbjct 231534 GATGTTGTAATCGGACAAGGT-TCGGCCATCTTCCAATTGCTTTCCCGCAAAAATTAAAC 231592
Query 44214 GCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGG 44273
| || || || | || | ||||| || ||| || ||| ||| | | | ||||
Sbjct 231593 GTTGTTGGTCGGGTGGGATGCCTTCTTTGTCCTGGATTTTCGCCTTGACATTCTCAATGG 231652
Query 44274 TGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333
|||| | | ||| || || | ||||| |||||||| || | || |||||||| || |
Sbjct 231653 TGTCCGATGGTTCGACTTCGAGGGTAATGGTCTTTCCGGTTAAAGTTTTCACGAAAATCT 231712
Query 44334 GCAT 44337
||||
Sbjct 231713 GCAT 231716
Score = 100 bits (110), Expect = 2e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| ||||||| | || || || ||||| || ||| || ||||||||||||||
Sbjct 231943 CATTCCACCTCTCAAACGCAGTACAAGATGAAGGGTTGACTCTTTCTGGATGTTGTAATC 232002
Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
|| | || | || | || |||| ||||| || || |||||||| || ||||||||||
Sbjct 232003 GGACAAGGT-CCGGCCATCTTCCAATTGCTTTCCCGCGAAGATCAATCGTTGCTGATCTG 232061
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285
|| | || || || || || ||| ||| | || | |||||||| | | ||
Sbjct 232062 GTGGGATGCCCTCTTTGTCTTGGATTTTCGCCTTAACGTTTTCAATGGTGTCTGATGGTT 232121
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || |||| || || || ||||| || | ||| ||||| || || |||||
Sbjct 232122 CGACTTCCAAAGTGATGGTTTTTCCAGTTAAGGTTTTCACAAAAATCTGCAT 232173
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| | | ||| ||||| ||||| || ||||| ||||||||||| ||
Sbjct 232171 CATACCGCCTCTTAAACGCAATACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTC 232230
Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| | ||| || | || |||| ||||| || ||||| || || || ||||||||
Sbjct 232231 GGATAAGGTT--CGGCCATCTTCCAATTGCTTGCCCGCAAAAATTAATCGTTGCTGATCC 232288
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284
| || | |||||| || ||| || ||| ||||| || | || || |||| |
Sbjct 232289 GGTGGGATACCTTCTTTATCCTGGATTTTCGCCTTCACGTTTTCAATCGTATCGGAAGGC 232348
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || | || || ||||| || || | ||| ||||| || || |||||
Sbjct 232349 TCGACTTCGAGAGTTATGGTCTTACCGGTTAAGGTTTTCACAAAAATCTGCAT 232401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359925734361963
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