Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13894 159 8e-34 seq12471 156 1e-32 seq12614 96.9 8e-15 seq7061 96.9 8e-15 >seq13894 Length=1211295 Score = 159 bits (176), Expect = 8e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||| | || ||||| || || |||||||| || ||| || ||| Sbjct 231713 CAGATTTTCGTGAAAACTTTAACCGGAAAGACCATTACCCTCGAAGTCGAACCATCGGAC 231654 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| || || |||||||||||||| ||||| || ||||| ||| Sbjct 231653 ACCATTGAGAATGTCAAGGCGAAAATCCAGGACAAAGAAGGCATCCCACCCGACCAACAA 231594 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || ||||| || | |||||||| | || |||| ||||||| ||| | Sbjct 231593 CGTTTAATTTTTGCGGGAAAGCAATTGGAAGATGGCCGAAC-CTTGTCCGATTACAACAT 231535 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| || ||||| || |||||| | |||||| || | ||| Sbjct 231534 CCAGAAGGAATCGACTCTGCATTTGGTTTTGCGATTGAGA 231495 Score = 154 bits (170), Expect = 4e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| | || |||||||| ||||| | || || ||| |||||| Sbjct 232170 CAGATTTTTGTGAAAACCTTAACTGGAAAAACCATCACTTTGGAAGTCGAACCATCAGAC 232111 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || || || || |||||||| || ||||| || || |||||| Sbjct 232110 ACCATTGAAAACGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCACCAGATCAGCAA 232051 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | |||||||| ||||| || | |||||||| |||| |||| ||||||| ||| | Sbjct 232050 CGATTGATCTTCGCGGGAAAGCAATTGGAAGATGGCCGGAC-CTTGTCCGATTACAACAT 231992 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||| ||||| || |||||||| Sbjct 231991 CCAGAAAGAGTCAACCCTTCATCTTGT 231965 Score = 140 bits (154), Expect = 8e-28 Identities = 158/208 (76%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||| | || || || || ||||| || || || ||| || || Sbjct 231942 CAGATTTTCGTGAAAACTTTAACTGGGAAGACCATCACGCTTGAAGTCGAACCTTCCGAT 231883 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || || || ||||||||||| || |||||||| ||||| Sbjct 231882 ACAATCGAAAACGTGAAGGCGAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAGCAG 231823 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| ||||| || |||||||| | || |||| | ||||| ||| | Sbjct 231822 CGTTTGATCTTTGCCGGTAAACAACTGGAAGATGGCCGAAC-CTTGTCAGATTACAACAT 231764 Query 178103 CCA-AAAAGAATCAACACTGCATCTTGT 178129 ||| ||| ||||| || || |||||||| Sbjct 231763 CCAGAAAGGAATCGACCCTTCATCTTGT 231736 >seq12471 Length=105862 Score = 156 bits (172), Expect = 1e-32 Identities = 171/226 (76%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 ||| ||| | || ||||| || ||||| ||||| |||||||| || || | ||||||| Sbjct 73866 TTAGAATCATGCAGATTTTTGTTAAAACCCTCACTGGAAAAACTATTACTTTGGAGGTGG 73807 Query 177973 A---AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | |||| ||||| ||||||||||| || ||||||||||| || |||||||| | Sbjct 73806 AGCCAAGC---GACACGATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTC 73750 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 |||| || || || ||| | || ||||| ||||| ||||||||||| || | || ||| Sbjct 73749 CTCCCGATCAACAGCGATTGATTTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACACTTA 73690 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||| || ||| |||| |||||||| || ||||| | || ||||| Sbjct 73689 GCGACTACAACATCCAGAAAGAATCGACCTTGCATTTGGTATTGAG 73644 Score = 147 bits (162), Expect = 5e-30 Identities = 159/208 (76%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || ||||| || ||||| ||||| |||||||| || || ||||| || || |||| Sbjct 73337 CAGATTTTTGTCAAAACCCTCACTGGAAAAACTATTACGCTCGAAGTTGAGCCAAGC--- 73281 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| |||||||| || ||| |||||||| ||||||||||| || |||||||| || Sbjct 73280 GACACTATCGAGAATGTAAAAGCCAAGATTCAAGACAAAGAAGGGATTCCTCCGGATCAA 73221 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | || ||||| |||||||| | ||||||||| | || || |||||| ||| Sbjct 73220 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGCACACTCAGCGATTACAAC 73161 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| |||||||| || || || |||| Sbjct 73160 ATCCAGAAAGAATCGACGCTTCA-CTTG 73134 Score = 136 bits (150), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| ||||| || || || || || ||||| | || || || || || Sbjct 73109 CAAATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGTTGGAAGTCGA--GCCTAGTG 73052 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||| || |||||| ||||| || ||||||||||| ||||| || || || | Sbjct 73051 ACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGATCAAC 72992 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || ||||| ||||||||||| | || ||| |||||| ||| Sbjct 72991 AGCGTCTAATCTTTGCTGGGAAACAACTCGAAGATGGTCGCACACTTAGCGATTACAACA 72932 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 | || ||||||||||| || ||| | ||||| Sbjct 72931 TTCAGAAAGAATCAACGCTTCATTTGGTTTT 72901 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| ||||| |||||||| || ||| | || || || || || Sbjct 73627 CAGATCTTCGTCAAAACACTCACTGGAAAAACCATTACCTTGGAAGTCGA--GCCAAGTG 73570 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||| || ||| ||||| || ||||||||||| || ||||| || || | Sbjct 73569 ATACCATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAAGGGATTCCTCCAGATCAAC 73510 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||||||||| ||||| | |||||||| | ||| | ||| || ||| Sbjct 73509 AGCGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACTTTGAGCGACTACAACA 73450 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||||||||| || || |||| Sbjct 73449 TTCAGAAAGAATCAACTCTTCA-CTTG 73424 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || ||||| | ||||| ||| ||| Sbjct 72820 CAAATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTTTAGAGGTTGAACCTAGTGAC 72761 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||| || || ||||| || ||||||||||| || || Sbjct 72760 ACGATCGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGGATCCCTCCGGATCAACAG 72701 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| | |||||||| | || | |||||| ||| || Sbjct 72700 CGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACATTGAGCGATTACAACATC 72641 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || |||||| | ||| Sbjct 72640 CAAAAGGAATCCACTCTGCATTTGGTT 72614 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || || |||||||| || ||||| || || || ||||| || || |||| Sbjct 72592 CAGATCTTTGTCAAAACTCTTACTGGAAAGACCATTACTCTCGAAGTTGAGCCAAGC--- 72536 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| |||||||| || ||| || ||||| || || ||||||||||| || || || Sbjct 72535 GACACGATCGAGAATGTAAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAA 72476 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || || || ||||| |||||| | || ||||| | ||| | ||| || ||| Sbjct 72475 CAGCGTCTGATTTTTGCCGGTAAACAGTTGGAGGATGGCCGCACTTTAAGCGACTACAAC 72416 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 | || |||||||| || || || |||| Sbjct 72415 ATTCAGAAAGAATCCACCCTTCA-CTTG 72389 >seq12614 Length=760689 Score = 96.9 bits (106), Expect = 8e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||| |||||||| || |||||| | || || || ||||||||||| ||||||||| | Sbjct 131260 AGGAATTCCTCCGGATCAACAACGATTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 131201 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || | |||| |||||| | || || || || || |||||||||| ||||| ||| Sbjct 131200 TACGTTGTCCGACTATAACATTCAGAAGGAGTCGACGTTGCATCTTGTGTTGAGGCTC 131143 >seq7061 Length=6671 Score = 96.9 bits (106), Expect = 8e-15 Identities = 172/244 (70%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 177880 TACAAAATATTTTAAGAAATATAT-AAAGTAAGGTTAAAATGCTCCAAATTTTCGTGAAA 177938 |||||| | | |||| ||| | || ||| || | |||| | | || || || || ||| Sbjct 2723 TACAAACT-TATTAAAAAACACATTAAACAAAAGATAAA-TCTTGCAGATCTTTGTTAAA 2780 Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC--TCAGACACCATCGAGAACG 177996 ||| | || || ||| | || || | || | | ||| || || |||||| | | Sbjct 2781 ACTTTAACGGGGAAATCCATAACGATAGA--TTGCGAGCATTCGGATACCATCAAATATA 2838 Query 177997 TCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCG 178056 ||||| |||||||||| || ||||||||||| | |||||||||||| || | ||||| | Sbjct 2839 TCAAAGAAAAGATTCAAGATAAAGAAGGAATAGCACCGGACCAGCAAAGATTAATCTTTG 2898 Query 178057 CCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAA 178116 | || |||||| | ||||||| || ||| | ||||| || | || |||||| || Sbjct 2899 CTGGTAAACAGTTAGAAGATGAAAAACGTCTCGAAGATTACAATATACAGAAAGAA--AA 2956 Query 178117 CACT 178120 |||| Sbjct 2957 CACT 2960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203503883262366