Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22] 14,739 sequences; 176,210,797 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12471 113 4e-20 >seq12471 Length=105862 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || |||| ||||| || || ||||| ||||| |||||| || ||||| |||| Sbjct 73647 AATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCGTCT 73706 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 ||||||||||| || ||||| |||| |||||||| || | |||| | ||||| ||| Sbjct 73707 TCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTATCC 73766 Query 41771 ATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| | || | ||||| | | |||||||| | ||||||||||| || || || Sbjct 73767 -TGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACCTCCAAAGTAATAGT 73825 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| || || || || || || |||||||||||| Sbjct 73826 TTTTCCAGTGAGGGTTTTAACAAAAATCTGCATG 73859 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || ||||| || ||||| ||||| || ||| ||| ||||| | || || Sbjct 73131 CACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTC 73190 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | || || || ||||| |||| |||||||| |||| |||| | || ||||| | Sbjct 73191 CAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCT-T 73249 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || |||| || | | ||||||||| | ||| || || | ||| || |||| Sbjct 73250 GAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTT 73309 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || || || ||||||||||| Sbjct 73310 TTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 ||||| |||| ||| ||||| || ||||||||||| || ||| || ||||| | Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCA 72957 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTT 41766 || ||||| || || || || || || || |||||||| || | |||| | || || || Sbjct 72958 TCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCT-TCTTT 73016 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 || | || | || |||| || | | |||||| || | ||| || |||| ||| | Sbjct 73017 GT-CTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGA 73075 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| || || ||||| || ||||| Sbjct 73076 TGGTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462218826266800