Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strigamia_20maritima_20[genbank_20GCA_5F000239455.1_202011-12-22]
14,739 sequences; 176,210,797 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq12471 113 4e-20
>seq12471
Length=105862
Score = 113 bits (124), Expect = 4e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710
|| |||| ||||| || || ||||| ||||| |||||| || ||||| ||||
Sbjct 73647 AATACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCGTCT 73706
Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
||||||||||| || ||||| |||| |||||||| || | |||| | ||||| |||
Sbjct 73707 TCGAGCTGCTTTCCAGCGAAAATCAATCGCTGTTGATCGGGAGGAATTCCTTCCTTATCC 73766
Query 41771 ATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829
||| | || | ||||| | | |||||||| | ||||||||||| || || ||
Sbjct 73767 -TGAATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCCACCTCCAAAGTAATAGT 73825
Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| || || || || || || ||||||||||||
Sbjct 73826 TTTTCCAGTGAGGGTTTTAACAAAAATCTGCATG 73859
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||||| || ||||| || ||||| ||||| || ||| ||| ||||| | || ||
Sbjct 73131 CACCAAGTGAAGCGTCGATTCTTTCTGGATGTTGTAATCGCTGAGTGTGCGTCCATCTTC 73190
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
| || || || ||||| |||| |||||||| |||| |||| | || ||||| |
Sbjct 73191 CAATTGTTTTCCAGCGAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCT-T 73249
Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
|| | || |||| || | | ||||||||| | ||| || || | ||| || ||||
Sbjct 73250 GAATCTTGGCTTTTACATTCTCGATAGTGTCGCTTGGCTCAACTTCGAGCGTAATAGTTT 73309
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || || || || || || |||||||||||
Sbjct 73310 TTCCAGTGAGGGTTTTGACAAAAATCTGCAT 73340
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707
||||| |||| ||| ||||| || ||||||||||| || ||| || ||||| |
Sbjct 72898 CGTAAAACCAAATGAAGCGTTGATTCTTTCTGAATGTTGTAATCGCTAAGTGTGCGACCA 72957
Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTT 41766
|| ||||| || || || || || || || |||||||| || | |||| | || || ||
Sbjct 72958 TCTTCGAGTTGTTTCCCAGCAAAGATTAGACGCTGTTGATCTGGTGGGATCCCT-TCTTT 73016
Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825
|| | || | || |||| || | | |||||| || | ||| || |||| ||| |
Sbjct 73017 GT-CTTGGATCTTGGCTTTGACATTTTCGATAGTGTCACTAGGCTCGACTTCCAACGTGA 73075
Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || || || ||||| || || ||||| || |||||
Sbjct 73076 TGGTCTTGCCAGTCAGGGTTTTGACGAAGATTTGCAT 73112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462218826266800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |