Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
SEQ11801 113 5e-20
SEQ23413 98.7 1e-15
SEQ14824 96.9 4e-15
>SEQ11801
Length=23874
Score = 113 bits (124), Expect = 5e-20
Identities = 132/177 (75%), Gaps = 1/177 (1%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
||||| || || || | | ||| ||||||||||| || | ||||||||| || || |||
Sbjct 19986 ATATAGGTGTCAATCAAGATGCTATACATTTCGGAATGGACGTTCTCCATAGCAATTTGA 19927
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|||||||| ||||||| ||||| || | ||||||||| | ||| || ||| ||| |
Sbjct 19926 AATCCGTAGAAGCATCTAGCTTCAGCAACTTGAACTTCTTTGCTGAAGCGCTCCACTAAA 19867
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAA 17410
|| ||||| || || || || || || || || || || |||||||||| ||||
Sbjct 19866 TTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAA-GAAA 19811
Score = 96.9 bits (106), Expect = 4e-15
Identities = 214/321 (67%), Gaps = 0/321 (0%)
Strand=Plus/Minus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| || |||||||||||||||||| |||| | || ||| ||||| || | ||| ||
Sbjct 20477 ATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAAC 20418
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
| | |||| | || | || || || || ||| || || | ||||| |
Sbjct 20417 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 20358
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977
|| |||| || || || || | |||| |||||| || ||||| || || ||
Sbjct 20357 AATACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCACA 20298
Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037
|||||||||||| || | || | ||| ||||||||||| || || ||| | ||
Sbjct 20297 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGCC 20238
Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097
|||| ||||||||| || || || || || ||| || |||||||| || || |
Sbjct 20237 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACCGC 20178
Query 17098 TGCAAACGCGATTAATCGTTC 17118
||||| || || | |||||
Sbjct 20177 AGCAAAAGCAATGATACGTTC 20157
>SEQ23413
Length=15718
Score = 98.7 bits (108), Expect = 1e-15
Identities = 128/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 17236 ATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAA 17295
||| || || || | | ||| |||||||| || || | || || || ||||| |||||
Sbjct 1118 ATAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAA 1177
Query 17296 TCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATT 17355
|||||| ||||||| ||||| | | ||||||||| | ||| || ||| ||| |||
Sbjct 1178 TCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATT 1237
Query 17356 TTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATA 17412
||||| || || || || || || || || || || ||||||||||| |||||
Sbjct 1238 CTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATA 1294
Score = 96.9 bits (106), Expect = 4e-15
Identities = 214/321 (67%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| || |||||||| |||||||| |||| | || ||| ||||| || | ||| ||
Sbjct 624 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 683
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
| | |||| | || | || || || || ||| || || | ||||| |
Sbjct 684 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 743
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977
|| |||| || || || || | ||||| |||||| || ||||| || || ||
Sbjct 744 AATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 803
Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037
|||||||||||| || | || | ||| ||||||||||| || || |||| | ||
Sbjct 804 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 863
Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097
|||| ||||||||| || || || || || ||| || |||||||| || || |
Sbjct 864 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAGC 923
Query 17098 TGCAAACGCGATTAATCGTTC 17118
||||| || || | |||||
Sbjct 924 AGCAAAAGCAATGATACGTTC 944
>SEQ14824
Length=19491
Score = 96.9 bits (106), Expect = 4e-15
Identities = 214/321 (67%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| || |||||||| |||||||| |||| | || ||| ||||| || | ||| ||
Sbjct 4960 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 5019
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
| | |||| | || | || || || || ||| || || | ||||| |
Sbjct 5020 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 5079
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977
|| |||| || || || || | ||||| |||||| || ||||| || || ||
Sbjct 5080 AATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 5139
Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037
|||||||||||| || | || | ||| ||||||||||| || || |||| | ||
Sbjct 5140 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 5199
Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097
|||| ||||||||| || || || || || ||| || |||||||| || || |
Sbjct 5200 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAGC 5259
Query 17098 TGCAAACGCGATTAATCGTTC 17118
||||| || || | |||||
Sbjct 5260 AGCAAAAGCAATGATACGTTC 5280
Score = 96.9 bits (106), Expect = 4e-15
Identities = 214/321 (67%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| || |||||||| |||||||| |||| | || ||| ||||| || | ||| ||
Sbjct 11759 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 11818
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
| | |||| | || | || || || || ||| || || | ||||| |
Sbjct 11819 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 11878
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977
|| |||| || || || || | ||||| |||||| || ||||| || || ||
Sbjct 11879 AATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 11938
Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037
|||||||||||| || | || | ||| ||||||||||| || || |||| | ||
Sbjct 11939 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 11998
Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097
|||| ||||||||| || || || || || ||| || |||||||| || || |
Sbjct 11999 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAGC 12058
Query 17098 TGCAAACGCGATTAATCGTTC 17118
||||| || || | |||||
Sbjct 12059 AGCAAAAGCAATGATACGTTC 12079
Score = 95.1 bits (104), Expect = 1e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 17236 ATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAA 17295
||| || || || | | ||| |||||||| || || | || || || ||||| |||||
Sbjct 5454 ATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAA 5513
Query 17296 TCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATT 17355
|||||| ||||||| ||||| | | ||||||||| | ||| || ||| ||| |||
Sbjct 5514 TCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATT 5573
Query 17356 TTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATA 17412
||||| || || || || || || || || || || ||||||||||| || ||
Sbjct 5574 CTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 5630
Score = 95.1 bits (104), Expect = 1e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 17236 ATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAA 17295
||| || || || | | ||| |||||||| || || | || || || ||||| |||||
Sbjct 12253 ATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAA 12312
Query 17296 TCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATT 17355
|||||| ||||||| ||||| | | ||||||||| | ||| || ||| ||| |||
Sbjct 12313 TCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATT 12372
Query 17356 TTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATA 17412
||||| || || || || || || || || || || ||||||||||| || ||
Sbjct 12373 CTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 12429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517382948356560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |