Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value SEQ23413 109 6e-19 SEQ14824 109 6e-19 SEQ11801 100 3e-16 SEQ20260 89.7 5e-13 SEQ20258 89.7 5e-13 seq3264 89.7 5e-13 >SEQ23413 Length=15718 Score = 109 bits (120), Expect = 6e-19 Identities = 279/423 (66%), Gaps = 4/423 (1%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || |||||||| ||||||||| |||| | | |||||| || || | || || Sbjct 624 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 683 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 | | |||| |||| || | || ||| || ||| || ||| | || || || | Sbjct 684 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 743 Query 16156 GGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCA 16215 ||| | ||| || || | |||| |||||| || || || ||||| || Sbjct 744 AATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 803 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCC 16275 ||||| ||| || || | || | ||| || ||||| ||||| || |||| | || Sbjct 804 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 863 Query 16276 TCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAACA 16333 |||| |||||||||||| || |||||||| | | | |||| |||||||| |||||| Sbjct 864 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCTTCAACA 921 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | |||||||| || | ||||| | | | ||| |||| | |||||| || Sbjct 922 GCAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGT 981 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCT 16453 ||||||| || || | |||| ||| || || || || |||||||| | |||| Sbjct 982 GCCCATTCAGCCTTACGCTTTACCGCTGGCATGGTCTCAATAGCATTAAACAAATGCTCT 1041 Query 16454 TTT 16456 || Sbjct 1042 CTT 1044 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 ||| || ||||||| | || ||||||||||| || | || || || ||||| ||||| Sbjct 1118 ATAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAA 1177 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTT 16593 ||| |||||||||| ||| || | | ||| ||||| | || || ||| | | || Sbjct 1178 TCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATT 1237 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATA 16650 ||| || || ||||| ||| |||||||| || || || || |||||||| ||||| Sbjct 1238 CTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATA 1294 >SEQ14824 Length=19491 Score = 109 bits (120), Expect = 6e-19 Identities = 279/423 (66%), Gaps = 4/423 (1%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || |||||||| ||||||||| |||| | | |||||| || || | || || Sbjct 4960 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 5019 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 | | |||| |||| || | || ||| || ||| || ||| | || || || | Sbjct 5020 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 5079 Query 16156 GGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCA 16215 ||| | ||| || || | |||| |||||| || || || ||||| || Sbjct 5080 AATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 5139 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCC 16275 ||||| ||| || || | || | ||| || ||||| ||||| || |||| | || Sbjct 5140 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 5199 Query 16276 TCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAACA 16333 |||| |||||||||||| || |||||||| | | | |||| |||||||| |||||| Sbjct 5200 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCTTCAACA 5257 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | |||||||| || | ||||| | | | ||| |||| | |||||| || Sbjct 5258 GCAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGT 5317 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCT 16453 ||||||| || || | |||| ||| || || || || |||||||| | |||| Sbjct 5318 GCCCATTCAGCCTTACGCTTTACCGCTGGCATGGTCTCAATAGCATTAAACAAATGCTCT 5377 Query 16454 TTT 16456 || Sbjct 5378 CTT 5380 Score = 109 bits (120), Expect = 6e-19 Identities = 279/423 (66%), Gaps = 4/423 (1%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || |||||||| ||||||||| |||| | | |||||| || || | || || Sbjct 11759 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 11818 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 | | |||| |||| || | || ||| || ||| || ||| | || || || | Sbjct 11819 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 11878 Query 16156 GGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCA 16215 ||| | ||| || || | |||| |||||| || || || ||||| || Sbjct 11879 AATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 11938 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCC 16275 ||||| ||| || || | || | ||| || ||||| ||||| || |||| | || Sbjct 11939 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 11998 Query 16276 TCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAACA 16333 |||| |||||||||||| || |||||||| | | | |||| |||||||| |||||| Sbjct 11999 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCTTCAACA 12056 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | |||||||| || | ||||| | | | ||| |||| | |||||| || Sbjct 12057 GCAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGT 12116 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCT 16453 ||||||| || || | |||| ||| || || || || |||||||| | |||| Sbjct 12117 GCCCATTCAGCCTTACGCTTTACCGCTGGCATGGTCTCAATAGCATTAAACAAATGCTCT 12176 Query 16454 TTT 16456 || Sbjct 12177 CTT 12179 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 ||| || ||||||| | || ||||||||||| || | || || || ||||| ||||| Sbjct 5454 ATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAA 5513 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTT 16593 ||| |||||||||| ||| || | | ||| ||||| | || || ||| | | || Sbjct 5514 TCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATT 5573 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATA 16650 ||| || || ||||| ||| |||||||| || || || || |||||||| || || Sbjct 5574 CTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 5630 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 16474 ATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAA 16533 ||| || ||||||| | || ||||||||||| || | || || || ||||| ||||| Sbjct 12253 ATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAA 12312 Query 16534 TCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTT 16593 ||| |||||||||| ||| || | | ||| ||||| | || || ||| | | || Sbjct 12313 TCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATT 12372 Query 16594 CTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATA 16650 ||| || || ||||| ||| |||||||| || || || || |||||||| || || Sbjct 12373 CTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 12429 >SEQ11801 Length=23874 Score = 100 bits (110), Expect = 3e-16 Identities = 217/323 (67%), Gaps = 4/323 (1%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || ||||||||||||||||| |||| | | |||||| || || | || || Sbjct 20477 ATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAAC 20418 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 | | |||| |||| || | || ||| || ||| || ||| | || || || | Sbjct 20417 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 20358 Query 16156 GGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCA 16215 ||| | ||| || || | ||||| |||||| || || || ||||| || Sbjct 20357 AATACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCACA 20298 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCC 16275 ||||| ||| || || | || | ||| || ||||| ||||| || ||| | || Sbjct 20297 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGCC 20238 Query 16276 TCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAACA 16333 |||| |||||||||||| || |||||||| | | | |||| |||||||| ||||| Sbjct 20237 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCTTCAACC 20180 Query 16334 GATGCAAAAGCGATTAATCGTTC 16356 | |||||||| || | ||||| Sbjct 20179 GCAGCAAAAGCAATGATACGTTC 20157 >SEQ20260 Length=19963 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 119088 TTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTG 119147 ||| ||||| | ||||||| ||||||||||||||||| ||||| |||| | | ||||| Sbjct 2233 TTCAGGAGTTTCTGTCCATTCAAGTATTTTTTTAGCCCAATACATCCGTAGAAAACCGTG 2174 Query 119148 CATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACG 119207 |||||| || || || || | || | ||||| | |||||||| ||| || ||||| Sbjct 2173 CATTTTGCCTTCATTGATTAATTGTAACTGTGCAGAGTTCCATAAGTCATCATGCGTACG 2114 Query 119208 GGCGTGTTCTAA 119219 || || || || Sbjct 2113 AGCCTGCTCAAA 2102 >SEQ20258 Length=134083 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 119088 TTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTG 119147 ||| ||||| | ||||||| ||||||||||||||||| ||||| |||| | | ||||| Sbjct 132391 TTCAGGAGTTTCTGTCCATTCAAGTATTTTTTTAGCCCAATACATTCGTAGAAAACCGTG 132332 Query 119148 CATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACG 119207 |||||| || || || || | || | ||||| | |||||||| ||| || ||||| Sbjct 132331 CATTTTGCCTTCATTGATTAATTGTAACTGTGCAGAGTTCCATAAGTCATCATGCGTACG 132272 Query 119208 GGCGTGTTCTAA 119219 || || || || Sbjct 132271 AGCCTGCTCAAA 132260 >seq3264 Length=23417 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 119088 TTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTG 119147 ||| ||||| | ||||||| ||||||||||||||||| ||||| |||| | | ||||| Sbjct 18615 TTCAGGAGTTTCTGTCCATTCAAGTATTTTTTTAGCCCAATACATTCGTAGAAAACCGTG 18674 Query 119148 CATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACG 119207 |||||| || || || || | || | ||||| | |||||||| ||| || ||||| Sbjct 18675 CATTTTGCCTTCATTGATTAATTGTAACTGTGCAGAGTTCCATAAGTCATCATGCGTACG 18734 Query 119208 GGCGTGTTCTAA 119219 || || || || Sbjct 18735 AGCCTGCTCAAA 18746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511253675239440