Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value SEQ18352 118 2e-21 seq5553 98.7 1e-15 seq2607 98.7 1e-15 >SEQ18352 Length=541547 Score = 118 bits (130), Expect = 2e-21 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTAT 146123 |||||||||||| ||||||||||| ||| || ||||||||||| || ||||| | | || Sbjct 401046 TAATACCAAATGCAAAGTAGATTCCTTTTGA-ATATTATAATCGGAGAGAGTACGTCCAT 400988 Query 146124 CATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTAT 146183 | || |||||||| || ||||| ||||| | ||| ||||| |||||||| || ||||| | Sbjct 400987 CTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGT 400928 Query 146184 CTTG 146187 |||| Sbjct 400927 CTTG 400924 Score = 113 bits (124), Expect = 7e-20 Identities = 101/124 (81%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTAT 146123 |||||||||||| ||||||||||| ||| || ||||| ||||| || || || | | || Sbjct 400362 TAATACCAAATGCAAAGTAGATTCCTTTTGA-ATATTGTAATCAGAGAGGGTACGTCCAT 400304 Query 146124 CATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTAT 146183 | || |||||||| ||||| |||||||| | ||| || || |||||||| || ||||||| Sbjct 400303 CTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGAATGCCCTCTTTAT 400244 Query 146184 CTTG 146187 |||| Sbjct 400243 CTTG 400240 Score = 109 bits (120), Expect = 8e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||||||| ||||||||||| || ||||| ||||| || ||||| | | ||| Sbjct 400818 TAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAGAGAGTACGTCCATC 400759 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || ||||| || ||||| |||||||| | ||| || || |||||||| || |||||||| Sbjct 400758 TTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGAATGCCCTCTTTATC 400699 Query 146185 TTG 146187 ||| Sbjct 400698 TTG 400696 Score = 109 bits (120), Expect = 8e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||||||| ||||||||||| || ||||| ||||| || ||||| | | ||| Sbjct 401730 TAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAGAGAGTACGTCCATC 401671 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || ||||| || ||||| |||||||| | ||| || || |||||||| || |||||||| Sbjct 401670 TTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGAATGCCCTCTTTATC 401611 Query 146185 TTG 146187 ||| Sbjct 401610 TTG 401608 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||||||||||||||||||| || || || ||||| || ||||| | | ||| Sbjct 389596 AATACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCT 389537 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||| |||||||| || || | ||| ||||| |||||||| |||||||| ||| Sbjct 389536 TCAAGTTGTTTGCCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT 389477 Query 146186 TG 146187 || Sbjct 389476 TG 389475 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||||||| ||||||||||| || ||||| ||||| || || || | | ||| Sbjct 401274 TAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAGAGGGTGCGACCATC 401215 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || |||||||| |||||||| ||||| | ||| || || |||||||| || ||||| || Sbjct 401214 TTCCAATTGTTTACCAGCAAATATCAAACGTTGTTGGTCTGGAGGAATGCCCTCTTTGTC 401155 Query 146185 TTG 146187 ||| Sbjct 401154 TTG 401152 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||||||||||||||||||| || || || ||||| || ||||| | | ||| Sbjct 390736 AATACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACCATCT 390677 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||| |||||||| || || | || ||||| |||||||| |||||||| ||| Sbjct 390676 TCAAGTTGTTTGCCAGCAAAGATTAAACGCTGTTGATCTGGAGGAATACCTTCTTTGTCT 390617 Query 146186 TG 146187 || Sbjct 390616 TG 390615 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | |||||||||||| | || ||||| || || || ||||| ||| Sbjct 400148 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 400089 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || |||||||| || ||||| ||||| | ||| ||||| |||||| Sbjct 400088 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 400029 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 400028 ATGCCCTCTTTGTCTTG 400012 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | |||||||||||| | || ||||| || || || ||||| ||| Sbjct 400604 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 400545 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || |||||||| || ||||| ||||| | ||| ||||| |||||| Sbjct 400544 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 400485 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 400484 ATGCCCTCTTTGTCTTG 400468 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | |||||||||||| | || ||||| || || || ||||| ||| Sbjct 401516 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 401457 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || |||||||| || ||||| ||||| | ||| ||||| |||||| Sbjct 401456 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 401397 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 401396 ATGCCCTCTTTGTCTTG 401380 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | |||||||||||| | || ||||| || || || ||||| ||| Sbjct 401972 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 401913 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || |||||||| || ||||| ||||| | ||| || || |||||| Sbjct 401912 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGGTCTGGAGGA 401853 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || ||||| ||||| | |||| || ||| || Sbjct 401852 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTCTCAATACTATCAGATGGTTCGACC 401793 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| ||||| |||||||| || |||| ||| || ||||| Sbjct 401792 TCTAAGGTGATCGTTTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401746 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 |||||||||||| | || |||||||| ||| || || || || || || | | ||| Sbjct 402186 TAATACCAAATGAAGTGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGGGTGCGACCATC 402127 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || |||||||| ||||| |||||||| | ||| || || |||||||| ||||||||||| Sbjct 402126 TTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGAATGCCTTCTTTATC 402067 Query 146185 TTG 146187 ||| Sbjct 402066 TTG 402064 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||||||||||||||||||| || || || || || || | ||| | | ||| Sbjct 390964 AATACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGACCATCT 390905 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||| |||||||| || || | || ||||| || ||||| |||||||||||| Sbjct 390904 TCAAGTTGTTTGCCAGCAAAGATTAAACGCTGTTGATCTGGGGGAATGCCTTCTTTATCT 390845 Query 146186 TG 146187 || Sbjct 390844 TG 390843 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||||| || || ||||||||||| || | ||| | | ||| || Sbjct 402410 ACCAAATGGAGTGTAGACTCCTTCTGAATATTATAATCAGATAAAGTGCGACCATCCTCC 402351 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||||||||| | | ||| ||||| |||||||| || ||||||||||| Sbjct 402350 AATTGTTTGCCAGCAAAAATGAGACGTTGTTGATCTGGAGGAATGCCCTCTTTATCTTG 402292 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | ||| |||||||| ||||||||||| || || || || || || Sbjct 399920 CCACCACGTAGACGTAACACCAAATGCAAAGTAGATTCCTTCTGAATGTTGTAGTCGGAG 399861 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | |||||| |||||||| || | | ||| ||||| || || Sbjct 399860 AGAGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGCGGT 399801 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 399800 ATACCTTCTTTGTCTTG 399784 >seq5553 Length=18996 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || ||||| || | || ||||| ||| || ||||||||||| || | || | | ||| Sbjct 18570 AACACCAAGTGAAGTGTTGATTCCTTTTGA-ATATTATAATCGGACAATGTGCGACCATC 18512 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || |||||||| |||||||||||||| | ||||||||| ||||||||||| ||||| || Sbjct 18511 TTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGAATTCCCTCTTTGTC 18452 Query 146185 TTG 146187 || Sbjct 18451 CTG 18449 >seq2607 Length=223464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || ||||| || | || ||||| ||| || ||||||||||| || | || | | ||| Sbjct 124820 AACACCAAGTGAAGTGTTGATTCCTTTTGA-ATATTATAATCGGACAATGTGCGACCATC 124878 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || |||||||| |||||||||||||| | ||||||||| ||||||||||| ||||| || Sbjct 124879 TTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGAATTCCCTCTTTGTC 124938 Query 146185 TTG 146187 || Sbjct 124939 CTG 124941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743292728240640