Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value SEQ23413 132 4e-26 SEQ14824 125 7e-24 SEQ11801 114 1e-20 >SEQ23413 Length=15718 Score = 132 bits (146), Expect = 4e-26 Identities = 189/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 || |||||| || || | | ||||||||||||||||| | ||| || |||||||| || Sbjct 1115 AACATAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 1174 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623 ||| || || |||||||||||||| | | ||| ||||| | || | || |||| Sbjct 1175 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 1234 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 || |||||||| || ||||| ||| ||||| || || | || || |||||||||| Sbjct 1235 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATA 1294 Query 16684 tttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743 ||||| || | ||| ||| ||| ||||| || | | || |||||||| Sbjct 1295 ACGCTCGTTGTCATTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 1354 Query 16744 TACAGTCCAAAAAGAAGCAACAGCCT 16769 ||| |||||||||||| |||||| Sbjct 1355 CACAACCCAAAAAGAAGCCTCAGCCT 1380 Score = 114 bits (126), Expect = 1e-20 Identities = 222/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| || |||||||| ||||| || ||| | | || ||||| || | | ||||| Sbjct 624 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 683 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | ||| | |||| || | |||||| || ||||| || || | || || || | Sbjct 684 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 743 Query 16189 TACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247 | ||| | ||| | ||| | | | || |||| |||||| | || ||||| |||| Sbjct 744 AA-TACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 802 Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 |||| ||||| || || | | ||||| || || |||||||| | ||| |||| | | Sbjct 803 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 862 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 | |||| || | ||| || ||||| ||||| ||| || |||||||||||||| | Sbjct 863 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 922 Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392 | ||||| |||| | || ||||| Sbjct 923 CAGCAAAAGCAATGATACGTTCACC 947 >SEQ14824 Length=19491 Score = 125 bits (138), Expect = 7e-24 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||||||||||||||| | ||| || |||||||| ||||| || || |||||||||||| Sbjct 5473 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 5532 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | | ||| ||||| | || | || |||| || |||||||| || ||||| Sbjct 5533 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 5592 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 ||| ||||| || || | || || |||||||| | ||||| || | ||| Sbjct 5593 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTC 5652 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 ||| ||| ||||| || | | || |||||||| ||| |||||||||||| || Sbjct 5653 TCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAAAAAGAAGCCTCA 5712 Query 16766 GCCT 16769 |||| Sbjct 5713 GCCT 5716 Score = 125 bits (138), Expect = 7e-24 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||||||||||||||| | ||| || |||||||| ||||| || || |||||||||||| Sbjct 12272 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 12331 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | | ||| ||||| | || | || |||| || |||||||| || ||||| Sbjct 12332 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 12391 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 ||| ||||| || || | || || |||||||| | ||||| || | ||| Sbjct 12392 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTC 12451 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 ||| ||| ||||| || | | || |||||||| ||| |||||||||||| || Sbjct 12452 TCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAAAAAGAAGCCTCA 12511 Query 16766 GCCT 16769 |||| Sbjct 12512 GCCT 12515 Score = 114 bits (126), Expect = 1e-20 Identities = 222/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| || |||||||| ||||| || ||| | | || ||||| || | | ||||| Sbjct 4960 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 5019 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | ||| | |||| || | |||||| || ||||| || || | || || || | Sbjct 5020 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 5079 Query 16189 TACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247 | ||| | ||| | ||| | | | || |||| |||||| | || ||||| |||| Sbjct 5080 AA-TACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 5138 Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 |||| ||||| || || | | ||||| || || |||||||| | ||| |||| | | Sbjct 5139 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 5198 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 | |||| || | ||| || ||||| ||||| ||| || |||||||||||||| | Sbjct 5199 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 5258 Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392 | ||||| |||| | || ||||| Sbjct 5259 CAGCAAAAGCAATGATACGTTCACC 5283 Score = 114 bits (126), Expect = 1e-20 Identities = 222/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| || |||||||| ||||| || ||| | | || ||||| || | | ||||| Sbjct 11759 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 11818 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | ||| | |||| || | |||||| || ||||| || || | || || || | Sbjct 11819 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 11878 Query 16189 TACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247 | ||| | ||| | ||| | | | || |||| |||||| | || ||||| |||| Sbjct 11879 AA-TACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 11937 Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 |||| ||||| || || | | ||||| || || |||||||| | ||| |||| | | Sbjct 11938 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 11997 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 | |||| || | ||| || ||||| ||||| ||| || |||||||||||||| | Sbjct 11998 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 12057 Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392 | ||||| |||| | || ||||| Sbjct 12058 CAGCAAAAGCAATGATACGTTCACC 12082 >SEQ11801 Length=23874 Score = 114 bits (126), Expect = 1e-20 Identities = 222/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| || |||||||||||||| || ||| | | || ||||| || | | ||||| Sbjct 20477 ATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAAC 20418 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | ||| | |||| || | |||||| || ||||| || || | || || || | Sbjct 20417 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 20358 Query 16189 TACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247 | ||| | ||| | || | | | ||||||| |||||| | || ||||| |||| Sbjct 20357 AA-TACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCAC 20299 Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 |||| ||||| || || | | ||||| || || |||||||| | ||| ||| | | Sbjct 20298 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGC 20239 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 | |||| || | ||| || ||||| ||||| ||| || |||||||||||||| | Sbjct 20238 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACCG 20179 Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392 | ||||| |||| | || ||||| Sbjct 20178 CAGCAAAAGCAATGATACGTTCACC 20154 Score = 111 bits (122), Expect = 1e-19 Identities = 184/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||| || || || | | ||||||||||| ||||| | |||||||| || || || Sbjct 19987 AATATAGGTGTCAATCAAGATGCTATACATTTCGGAATGGACGTTCTCCATAGCAATTTG 19928 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623 ||| || || |||||||||||||| | | ||| ||||| | || | || |||| Sbjct 19927 AAATCCGTAGAAGCATCTAGCTTCAGCAACTTGAACTTCTTTGCTGAAGCGCTCCACTAA 19868 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 || |||||||| || ||||| ||| ||||| || || | || || |||| ||| Sbjct 19867 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAAGAAAGAA 19808 Query 16684 tttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743 ||||| ||| | ||| ||| ||| ||||| || | | || |||||||| Sbjct 19807 ACGCTCGTTTTCTTTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 19748 Query 16744 TACAGTCCAAAAAGAAGCAACAGCCT 16769 ||| ||| |||||||| |||||| Sbjct 19747 CACAACCCAGAAAGAAGCCTCAGCCT 19722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462366644041200