Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
SEQ23413 132 4e-26
SEQ14824 125 7e-24
SEQ11801 114 1e-20
>SEQ23413
Length=15718
Score = 132 bits (146), Expect = 4e-26
Identities = 189/266 (71%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563
|| |||||| || || | | ||||||||||||||||| | ||| || |||||||| ||
Sbjct 1115 AACATAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 1174
Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623
||| || || |||||||||||||| | | ||| ||||| | || | || ||||
Sbjct 1175 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 1234
Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683
|| |||||||| || ||||| ||| ||||| || || | || || ||||||||||
Sbjct 1235 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATA 1294
Query 16684 tttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743
||||| || | ||| ||| ||| ||||| || | | || ||||||||
Sbjct 1295 ACGCTCGTTGTCATTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 1354
Query 16744 TACAGTCCAAAAAGAAGCAACAGCCT 16769
||| |||||||||||| ||||||
Sbjct 1355 CACAACCCAAAAAGAAGCCTCAGCCT 1380
Score = 114 bits (126), Expect = 1e-20
Identities = 222/325 (68%), Gaps = 2/325 (1%)
Strand=Plus/Plus
Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128
||| || |||||||| ||||| || ||| | | || ||||| || | | |||||
Sbjct 624 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 683
Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188
|| | ||| | |||| || | |||||| || ||||| || || | || || || |
Sbjct 684 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 743
Query 16189 TACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247
| ||| | ||| | ||| | | | || |||| |||||| | || ||||| ||||
Sbjct 744 AA-TACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 802
Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307
|||| ||||| || || | | ||||| || || |||||||| | ||| |||| | |
Sbjct 803 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 862
Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367
| |||| || | ||| || ||||| ||||| ||| || |||||||||||||| |
Sbjct 863 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 922
Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392
| ||||| |||| | || |||||
Sbjct 923 CAGCAAAAGCAATGATACGTTCACC 947
>SEQ14824
Length=19491
Score = 125 bits (138), Expect = 7e-24
Identities = 174/244 (71%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585
||||||||||||||||| | ||| || |||||||| ||||| || || ||||||||||||
Sbjct 5473 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 5532
Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645
|| | | ||| ||||| | || | || |||| || |||||||| || |||||
Sbjct 5533 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 5592
Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705
||| ||||| || || | || || |||||||| | ||||| || | |||
Sbjct 5593 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTC 5652
Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765
||| ||| ||||| || | | || |||||||| ||| |||||||||||| ||
Sbjct 5653 TCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAAAAAGAAGCCTCA 5712
Query 16766 GCCT 16769
||||
Sbjct 5713 GCCT 5716
Score = 125 bits (138), Expect = 7e-24
Identities = 174/244 (71%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585
||||||||||||||||| | ||| || |||||||| ||||| || || ||||||||||||
Sbjct 12272 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 12331
Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645
|| | | ||| ||||| | || | || |||| || |||||||| || |||||
Sbjct 12332 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 12391
Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705
||| ||||| || || | || || |||||||| | ||||| || | |||
Sbjct 12392 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTC 12451
Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765
||| ||| ||||| || | | || |||||||| ||| |||||||||||| ||
Sbjct 12452 TCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAAAAAGAAGCCTCA 12511
Query 16766 GCCT 16769
||||
Sbjct 12512 GCCT 12515
Score = 114 bits (126), Expect = 1e-20
Identities = 222/325 (68%), Gaps = 2/325 (1%)
Strand=Plus/Plus
Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128
||| || |||||||| ||||| || ||| | | || ||||| || | | |||||
Sbjct 4960 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 5019
Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188
|| | ||| | |||| || | |||||| || ||||| || || | || || || |
Sbjct 5020 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 5079
Query 16189 TACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247
| ||| | ||| | ||| | | | || |||| |||||| | || ||||| ||||
Sbjct 5080 AA-TACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 5138
Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307
|||| ||||| || || | | ||||| || || |||||||| | ||| |||| | |
Sbjct 5139 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 5198
Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367
| |||| || | ||| || ||||| ||||| ||| || |||||||||||||| |
Sbjct 5199 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 5258
Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392
| ||||| |||| | || |||||
Sbjct 5259 CAGCAAAAGCAATGATACGTTCACC 5283
Score = 114 bits (126), Expect = 1e-20
Identities = 222/325 (68%), Gaps = 2/325 (1%)
Strand=Plus/Plus
Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128
||| || |||||||| ||||| || ||| | | || ||||| || | | |||||
Sbjct 11759 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 11818
Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188
|| | ||| | |||| || | |||||| || ||||| || || | || || || |
Sbjct 11819 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 11878
Query 16189 TACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247
| ||| | ||| | ||| | | | || |||| |||||| | || ||||| ||||
Sbjct 11879 AA-TACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 11937
Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307
|||| ||||| || || | | ||||| || || |||||||| | ||| |||| | |
Sbjct 11938 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 11997
Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367
| |||| || | ||| || ||||| ||||| ||| || |||||||||||||| |
Sbjct 11998 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 12057
Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392
| ||||| |||| | || |||||
Sbjct 12058 CAGCAAAAGCAATGATACGTTCACC 12082
>SEQ11801
Length=23874
Score = 114 bits (126), Expect = 1e-20
Identities = 222/325 (68%), Gaps = 2/325 (1%)
Strand=Plus/Minus
Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128
||| || |||||||||||||| || ||| | | || ||||| || | | |||||
Sbjct 20477 ATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAAC 20418
Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188
|| | ||| | |||| || | |||||| || ||||| || || | || || || |
Sbjct 20417 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 20358
Query 16189 TACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247
| ||| | ||| | || | | | ||||||| |||||| | || ||||| ||||
Sbjct 20357 AA-TACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCAC 20299
Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307
|||| ||||| || || | | ||||| || || |||||||| | ||| ||| | |
Sbjct 20298 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGC 20239
Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367
| |||| || | ||| || ||||| ||||| ||| || |||||||||||||| |
Sbjct 20238 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACCG 20179
Query 16368 CGGCAAATGCAACCAATCGCTCACC 16392
| ||||| |||| | || |||||
Sbjct 20178 CAGCAAAAGCAATGATACGTTCACC 20154
Score = 111 bits (122), Expect = 1e-19
Identities = 184/266 (69%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563
|||||| || || || | | ||||||||||| ||||| | |||||||| || || ||
Sbjct 19987 AATATAGGTGTCAATCAAGATGCTATACATTTCGGAATGGACGTTCTCCATAGCAATTTG 19928
Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623
||| || || |||||||||||||| | | ||| ||||| | || | || ||||
Sbjct 19927 AAATCCGTAGAAGCATCTAGCTTCAGCAACTTGAACTTCTTTGCTGAAGCGCTCCACTAA 19868
Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683
|| |||||||| || ||||| ||| ||||| || || | || || |||| |||
Sbjct 19867 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAAGAAAGAA 19808
Query 16684 tttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTC 16743
||||| ||| | ||| ||| ||| ||||| || | | || ||||||||
Sbjct 19807 ACGCTCGTTTTCTTTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 19748
Query 16744 TACAGTCCAAAAAGAAGCAACAGCCT 16769
||| ||| |||||||| ||||||
Sbjct 19747 CACAACCCAGAAAGAAGCCTCAGCCT 19722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462366644041200
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