Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value SEQ18352 114 1e-20 SEQ18478 84.2 2e-11 seq9966 84.2 2e-11 >SEQ18352 Length=541547 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||||||||| || || ||| ||||||||||||||||| ||| || || | || Sbjct 400134 TAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAAAGAGTACGTCCATC 400075 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| |||||| ||||| |||||||| || ||||| || ||||| | ||||| ||||| Sbjct 400074 TTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTC 400015 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| |||||| | | | ||| || || ||||| | ||| || || Sbjct 400014 TTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATAGT 399955 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| |||||| ||||| || ||||| Sbjct 399954 TTTGCCTGTCAAAGTCTTTACAAAAATCTGCAT 399922 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||||||||| || || ||| ||||||||||||||||| ||| || || | || Sbjct 400590 TAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAAAGAGTACGTCCATC 400531 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| |||||| ||||| |||||||| || ||||| || ||||| | ||||| ||||| Sbjct 400530 TTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTC 400471 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| |||||| | | | ||| || || ||||| | ||| ||||| Sbjct 400470 TTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATCGT 400411 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || | |||||| || || || ||||| Sbjct 400410 TTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 400378 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||||||||| || || ||| ||||||||||||||||| ||| || || | || Sbjct 401502 TAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAAAGAGTACGTCCATC 401443 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| |||||| ||||| |||||||| || ||||| || ||||| | ||||| ||||| Sbjct 401442 TTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTC 401383 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| |||||| | | | ||| || || ||||| | ||| ||||| Sbjct 401382 TTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATCGT 401323 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || | |||||| || || || ||||| Sbjct 401322 TTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401290 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||||||||| || || ||| ||||||||||||||||| ||| || || | || Sbjct 401958 TAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAAAGAGTACGTCCATC 401899 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| |||||| ||||| |||||||| || |||||||| ||||| | ||||| ||||| Sbjct 401898 TTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGGTCTGGAGGAATGCCCTCTTTGTC 401839 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| ||| || | | | || || || ||||| | ||| ||||| Sbjct 401838 TTGAATTTTAGCCTTGACGTTCTCAATACTATCAGATGGTTCGACCTCTAAGGTGATCGT 401779 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || | |||||| || || || ||||| Sbjct 401778 TTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401746 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||| ||||||||||||||| || || | || Sbjct 389140 AAGACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGCCCATCC 389081 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || || || || || || |||||||| || || | ||| ||||| ||| Sbjct 389080 TCCAATTGCTTACCAGCAAAAATTAAACGTTGTTGGTCTGGTGGAATACCTTCCTTATCC 389021 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | | |||| ||| || |||| ||||| || Sbjct 389020 TGAATTTTAGCCTTGACATTTTCAATGGTGTCGGATGGCTCGACTTCCAAAGTAATGGTT 388961 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || |||| ||| ||||||||||||||||||||| Sbjct 388960 TTACCAGTCAAAGTTTTCACAAAGATTTGCATGTTG 388925 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||||||||| |||| || ||||||||||| ||||| ||| || |||| | || Sbjct 401274 TAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAGAGGGTGCGACCATC 401215 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| |||||| || || |||||||| || |||||||| ||||| | ||||| ||||| Sbjct 401214 TTCCAATTGTTTACCAGCAAATATCAAACGTTGTTGGTCTGGAGGAATGCCCTCTTTGTC 401155 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| ||| || | | | || || || || || | ||||| || Sbjct 401154 TTGAATTTTAGCCTTGACGTTCTCAATACTATCAGATGGTTCGACTTCTAGTGTAATGGT 401095 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| ||||| || || ||||| || ||||| Sbjct 401094 CTTGCCGGTCAGGGTTTTAACAAATATCTGCAT 401062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||||||||| || || ||| || ||||| ||||||||||| || |||| | || Sbjct 402186 TAATACCAAATGAAGTGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGGGTGCGACCATC 402127 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||| |||||| || ||||| ||||| || |||||||| ||||| | || || || || Sbjct 402126 TTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGAATGCCTTCTTTATC 402067 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 |||||| ||| || | | | |||| | || || |||| ||||| || Sbjct 402066 TTGAATTTTGGCCTTGACGTTCTCAATCGTGTCAGATGCTTCGACTTCCAATGTAATGGT 402007 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| || || ||||| || ||||| Sbjct 402006 TTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 401974 >SEQ18478 Length=82247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTC 45183 || ||||| || || || |||||| |||||||||||||| | | || | ||| | || Sbjct 41427 AACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGATAAGGT-GCGTCCATC 41485 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || ||||| || || ||||| ||||| || ||||| || || || | |||||||| || Sbjct 41486 TTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTATC 41545 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||||| ||| || | | |||| | ||| || |||| || || || Sbjct 41546 TTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTCAACTTCCAAAGTGATAGT 41605 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 |||||| |||| ||| || || || || ||||| |||| Sbjct 41606 CTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTTGC 41643 >seq9966 Length=18433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTC 45183 || ||||| || || || |||||| |||||||||||||| | | || | ||| | || Sbjct 14138 AACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGATAAGGT-GCGTCCATC 14196 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || ||||| || || ||||| ||||| || ||||| || || || | |||||||| || Sbjct 14197 TTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTATC 14256 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||||| ||| || | | |||| | ||| || |||| || || || Sbjct 14257 TTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTCAACTTCCAAAGTGATAGT 14316 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 |||||| |||| ||| || || || || ||||| |||| Sbjct 14317 CTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTTGC 14354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394954141797982