Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq608 93.3 6e-14 seq5591 91.5 2e-13 seq5103 91.5 2e-13 >seq608 Length=77208 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 73950 AATAGACAACCTACTTTACATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTATGG-A 74008 ||| | |||||||||||||||||| |||||||||| || ||| ||||||| | | Sbjct 29212 AATCGGCAACCTACTTTACATAAAATGTCAATGATGGGTCATCGTTGTAAAATTTTACCA 29153 Query 74009 TGTAAAAACCTTTAAATTTAATCTTGCATGCACTAAACCATATAATGCAGATTTTGATGG 74068 || || | ||| || |||||| | || ||| |||||||||||| ||||| ||||| Sbjct 29152 TGGTCAA-CATTTCGTTTAAATCTTTCCTGTACTTCACCATATAATGCTGATTTCGATGG 29094 Query 74069 AGATGAAATGAAT 74081 |||||||||||| Sbjct 29093 CGATGAAATGAAT 29081 >seq5591 Length=20793 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/262 (68%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 172361 CCATGGTAAAATACCACCAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATCTCC 172420 |||||| || || | || ||| ||||||| |||||| |||| ||||||||| || Sbjct 9824 CCATGGCAACTTAGCGCCCATCCATTCTATCAAATTATATCCTAAAATTTCTAAGTCAGA 9883 Query 172421 TCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATTATG 172480 | ||| | ||||||||||||| ||| | | |||||||| | || |||||||| Sbjct 9884 ACGCATTGTTGCAACACCTTGATGAGCATCACGGGATGTATATTCAATAGTGCCATTATG 9943 Query 172481 TGCTTTTTTAGGATCTGGTTGATAAATGT----TACTATAACGAGAACATAATCCAAAAT 172536 |||||| |||||||||| | || | | || || | ||||| ||| ||| | | Sbjct 9944 CATTTTTTTTGGATCTGGTTTA-AACTCTTTCGTAGTAAATCGAGATGCTAAACCATAGT 10002 Query 172537 CAACTAAATAAATATGAGAAGTATCATTTT----CTTTC--AATAGTATATTTTCGCCCT 172590 | | |||||| |||||| | |||||| | || |||| |||||| | | | Sbjct 10003 CTAGCAAATAAGCTTGAGAATTTCCATTTTTACCATATCCTAATAATATATTAGGGGCTT 10062 Query 172591 TAATGTCAGCATGAATATATCC 172612 | | ||||||||| || || || Sbjct 10063 TTAAGTCAGCATGTATGTAACC 10084 >seq5103 Length=41288 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/262 (68%), Gaps = 11/262 (4%) Strand=Plus/Minus Query 172361 CCATGGTAAAATACCACCAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATCTCC 172420 |||||| || || | || ||| ||||||| |||||| |||| ||||||||| || Sbjct 35797 CCATGGCAACTTAGCGCCCATCCATTCTATCAAATTATATCCTAAAATTTCTAAGTCAGA 35738 Query 172421 TCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATTATG 172480 | ||| | ||||||||||||| ||| | | |||||||| | || |||||||| Sbjct 35737 ACGCATTGTTGCAACACCTTGATGAGCATCACGGGATGTATATTCAATAGTGCCATTATG 35678 Query 172481 TGCTTTTTTAGGATCTGGTTGATAAATGT----TACTATAACGAGAACATAATCCAAAAT 172536 |||||| |||||||||| | || | | || || | ||||| ||| ||| | | Sbjct 35677 CATTTTTTTTGGATCTGGTTTA-AACTCTTTCGTAGTAAATCGAGATGCTAAACCATAGT 35619 Query 172537 CAACTAAATAAATATGAGAAGTATCATTTT----CTTTC--AATAGTATATTTTCGCCCT 172590 | | |||||| |||||| | |||||| | || |||| |||||| | | | Sbjct 35618 CTAGCAAATAAGCTTGAGAATTTCCATTTTTACCATATCCTAATAATATATTAGGGGCTT 35559 Query 172591 TAATGTCAGCATGAATATATCC 172612 | | ||||||||| || || || Sbjct 35558 TTAAGTCAGCATGTATGTAACC 35537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679600751329440