Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_003038.1
Length=212482
Score E
Sequences producing significant alignments: (Bits) Value
seq608 93.3 6e-14
seq5591 91.5 2e-13
seq5103 91.5 2e-13
>seq608
Length=77208
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 73950 AATAGACAACCTACTTTACATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTATGG-A 74008
||| | |||||||||||||||||| |||||||||| || ||| ||||||| | |
Sbjct 29212 AATCGGCAACCTACTTTACATAAAATGTCAATGATGGGTCATCGTTGTAAAATTTTACCA 29153
Query 74009 TGTAAAAACCTTTAAATTTAATCTTGCATGCACTAAACCATATAATGCAGATTTTGATGG 74068
|| || | ||| || |||||| | || ||| |||||||||||| ||||| |||||
Sbjct 29152 TGGTCAA-CATTTCGTTTAAATCTTTCCTGTACTTCACCATATAATGCTGATTTCGATGG 29094
Query 74069 AGATGAAATGAAT 74081
||||||||||||
Sbjct 29093 CGATGAAATGAAT 29081
>seq5591
Length=20793
Score = 91.5 bits (100), Expect = 2e-13
Identities = 179/262 (68%), Gaps = 11/262 (4%)
Strand=Plus/Plus
Query 172361 CCATGGTAAAATACCACCAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATCTCC 172420
|||||| || || | || ||| ||||||| |||||| |||| ||||||||| ||
Sbjct 9824 CCATGGCAACTTAGCGCCCATCCATTCTATCAAATTATATCCTAAAATTTCTAAGTCAGA 9883
Query 172421 TCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATTATG 172480
| ||| | ||||||||||||| ||| | | |||||||| | || ||||||||
Sbjct 9884 ACGCATTGTTGCAACACCTTGATGAGCATCACGGGATGTATATTCAATAGTGCCATTATG 9943
Query 172481 TGCTTTTTTAGGATCTGGTTGATAAATGT----TACTATAACGAGAACATAATCCAAAAT 172536
|||||| |||||||||| | || | | || || | ||||| ||| ||| | |
Sbjct 9944 CATTTTTTTTGGATCTGGTTTA-AACTCTTTCGTAGTAAATCGAGATGCTAAACCATAGT 10002
Query 172537 CAACTAAATAAATATGAGAAGTATCATTTT----CTTTC--AATAGTATATTTTCGCCCT 172590
| | |||||| |||||| | |||||| | || |||| |||||| | | |
Sbjct 10003 CTAGCAAATAAGCTTGAGAATTTCCATTTTTACCATATCCTAATAATATATTAGGGGCTT 10062
Query 172591 TAATGTCAGCATGAATATATCC 172612
| | ||||||||| || || ||
Sbjct 10063 TTAAGTCAGCATGTATGTAACC 10084
>seq5103
Length=41288
Score = 91.5 bits (100), Expect = 2e-13
Identities = 179/262 (68%), Gaps = 11/262 (4%)
Strand=Plus/Minus
Query 172361 CCATGGTAAAATACCACCAGACCACTCTATCATATTATAGCCTAGAATTTCTAAATCTCC 172420
|||||| || || | || ||| ||||||| |||||| |||| ||||||||| ||
Sbjct 35797 CCATGGCAACTTAGCGCCCATCCATTCTATCAAATTATATCCTAAAATTTCTAAGTCAGA 35738
Query 172421 TCTTCTTGATTCAACACCTTGATGGCTATCTCTGCTTGTATATTTTAATGTACCATTATG 172480
| ||| | ||||||||||||| ||| | | |||||||| | || ||||||||
Sbjct 35737 ACGCATTGTTGCAACACCTTGATGAGCATCACGGGATGTATATTCAATAGTGCCATTATG 35678
Query 172481 TGCTTTTTTAGGATCTGGTTGATAAATGT----TACTATAACGAGAACATAATCCAAAAT 172536
|||||| |||||||||| | || | | || || | ||||| ||| ||| | |
Sbjct 35677 CATTTTTTTTGGATCTGGTTTA-AACTCTTTCGTAGTAAATCGAGATGCTAAACCATAGT 35619
Query 172537 CAACTAAATAAATATGAGAAGTATCATTTT----CTTTC--AATAGTATATTTTCGCCCT 172590
| | |||||| |||||| | |||||| | || |||| |||||| | | |
Sbjct 35618 CTAGCAAATAAGCTTGAGAATTTCCATTTTTACCATATCCTAATAATATATTAGGGGCTT 35559
Query 172591 TAATGTCAGCATGAATATATCC 172612
| | ||||||||| || || ||
Sbjct 35558 TTAAGTCAGCATGTATGTAACC 35537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 679600751329440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |