Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value SEQ18352 114 1e-20 SEQ18478 95.1 9e-15 seq9966 95.1 9e-15 seq5553 95.1 9e-15 seq2607 95.1 9e-15 >SEQ18352 Length=541547 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | |||| ||| || |||||||| ||||||||||||||||||| Sbjct 389155 CCACCACGTAGACGCAAGACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAG 389096 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| |||||||| || || ||| | || | | |||||| || || Sbjct 389095 AGGGTACGCCCATCCTCCAATTGCTTACCAGCAAAAATTAAACGTTGTTGGTCTGGTGGA 389036 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||||| |||||| | | ||| ||||| |||||| | Sbjct 389035 ATACCTTCCTTATCCTGAATTTTAGCCTTGACATTTTCAATGGTGTCGGATGGCTCGACT 388976 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 || | || ||| |||| || ||||| ||||| ||||| |||||||| || || Sbjct 388975 TCCAAAGTAATGGTTTTACCAGTCAAAGTTTTCACAAAGATTTGCATGTTGAA 388923 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | ||||| |||||||| |||||||| || ||||||||||| | Sbjct 402200 CCGCCACGTAGGCGTAATACCAAATGAAGTGTGGATTCTTTCTGTATGTTGTAGTCAGAG 402141 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || | || | | |||||| || || Sbjct 402140 AGGGTGCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGA 402081 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| ||||| ||||| |||||| | ||| |||||| | ||| | Sbjct 402080 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACGTTCTCAATCGTGTCAGATGCTTCGACT 402021 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| ||||||| ||||| ||||||||||| || ||||| Sbjct 402020 TCCAATGTAATGGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 401974 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | || ||||| ||||| ||||||||||||| || || || |||||| Sbjct 390962 TACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGACCATCTTC 390903 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | ||||||||| ||| |||| | | |||||||| ||| | |||||| ||||| Sbjct 390902 AAGTTGTTTGCCAGCAAAGATTAAACGCTGTTGATCTGGGGGAATGCCTTCTTTATCTTG 390843 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| ||| || | | ||| |||||| |||||| || | || ||| |||| Sbjct 390842 GATTTTAGCCTTAACATTTTCAATGGTGTCAGATGGCTCGACCTCTAAAGTAATGGTTTT 390783 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||| || || || || |||||||| Sbjct 390782 GCCAGTCAAAGTCTTGACGAAGATTTGCAT 390753 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | | ||||| |||||||| ||||| || ||||||||||| |||| Sbjct 400148 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 400089 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||||||| || ||| | || | | ||||||||| || Sbjct 400088 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 400029 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || ||||| ||| || | ||| | ||| || ||| Sbjct 400028 ATGCCCTCTTTGTCTTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACC 399969 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| ||||| || ||||||||||| ||||| Sbjct 399968 TCTAAGGTGATAGTTTTGCCTGTCAAAGTCTTTACAAAAATCTGCAT 399922 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| || ||||| || || || ||||| || || || | Sbjct 402429 TCCTCCGCGAAGACGCAGCACCAAATGGAGTGTAGACTCCTTCTGAATATTATAATCAGA 402370 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||| |||||||||||||| ||| | || || | ||||||||| || Sbjct 402369 TAAAGTGCGACCATCCTCCAATTGTTTGCCAGCAAAAATGAGACGTTGTTGATCTGGAGG 402310 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| || ||||| ||| | | || || || | ||| | | ||| |||||| Sbjct 402309 AATGCCCTCTTTATCTTGAATCT-TAGCTTTAACATTCTCAATACTATCAGATGGCTCGA 402251 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| |||||||| || || |||||||| ||||| Sbjct 402250 CCTCTAAGGTGATAGTTTTACCGGTCAAAGTCTTGACAAAAATCTGCAT 402202 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | | ||||| |||||||| ||||| || ||||||||||| |||| Sbjct 401972 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 401913 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||||||| || ||| | || | | |||||| || || Sbjct 401912 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGGTCTGGAGGA 401853 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || ||||| |||||| | ||| | | ||| || ||| Sbjct 401852 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTCTCAATACTATCAGATGGTTCGACC 401793 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| || || || || || ||||| ||||| Sbjct 401792 TCTAAGGTGATCGTTTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401746 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || || |||||||| ||||| || |||||||| | | || || ||||||| Sbjct 390277 ACCAAATGGAGAGTTGATTCCTTTTGGATATTGTAGTCAGATAAGGTGCGACCATCTTCC 390218 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || || || || ||| | || | | |||||||| || | ||||| ||||| Sbjct 390217 AACTGCTTACCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTATCTTGG 390158 Query 18237 ATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | |||| ||| | | | ||| ||| |||||| || | |||||| |||| Sbjct 390157 ATTT-TAGCTTTGACGTTCTCGATAGTATCAGACGGCTCGACCTCTAAGGTGATAGTTTT 390099 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || ||||||||||| ||||| Sbjct 390098 ACCGGTCAAAGTCTTTACAAAAATCTGCAT 390069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | ||||| |||||||| ||||| || || ||||||||||| | Sbjct 390523 CCACCACGTAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGTATGTTGTAGTCAGAT 390464 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||| || || || || | || | | || ||||| ||| Sbjct 390463 AAGGTACGACCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 390404 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || ||||| |||||| | | ||| ||| ||| || || | Sbjct 390403 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCAACT 390344 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| ||||||| ||||| || || ||||| || ||||| Sbjct 390343 TCCAATGTAATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 390297 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | | ||||| |||||||| ||||| || ||||||||||| |||| Sbjct 400604 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 400545 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||||||| || ||| | || | | ||||||||| || Sbjct 400544 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 400485 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || ||||| ||| || | ||| | ||| || ||| Sbjct 400484 ATGCCCTCTTTGTCTTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACC 400425 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| || || || || || ||||| ||||| Sbjct 400424 TCTAAGGTGATCGTTTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 400378 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | | ||||| |||||||| ||||| || ||||||||||| |||| Sbjct 401516 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 401457 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||||||||| || ||| | || | | ||||||||| || Sbjct 401456 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 401397 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || ||||| ||| || | ||| | ||| || ||| Sbjct 401396 ATGCCCTCTTTGTCTTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACC 401337 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| || || || || || ||||| ||||| Sbjct 401336 TCTAAGGTGATCGTTTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401290 >SEQ18478 Length=82247 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||||| || || ||||||||||||||||||| | || | |||||| Sbjct 41430 ACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGATAAGGTGCGTCCATCTTCA 41489 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||| ||||| || | || | | ||||||||| || | ||| |||||||| Sbjct 41490 AGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGG 41549 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||| || | | ||| ||||| ||||| ||| | ||||| | ||| Sbjct 41550 ATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTCAACTTCCAAAGTGATAGTCTTG 41609 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| ||||| || || || |||||||| Sbjct 41610 CCGGTCAAAGTTTTAACGAATATCTGCATTTT 41641 >seq9966 Length=18433 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| |||| | | |||| |||||||| || || ||||||||||||||||||| Sbjct 14123 CCTCCACGTAAACGCAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGAT 14182 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||| ||||| || | || | | ||||||||| || Sbjct 14183 AAGGTGCGTCCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 14242 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| |||| ||| || | | ||| ||||| ||||| | Sbjct 14243 ATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTCAACT 14302 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||| | ||||||||||| ||||| || || || |||||||| Sbjct 14303 TCCAAAGTGATAGTCTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTT 14352 >seq5553 Length=18996 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | |||| ||||||||||||||| |||||||| || || |||| | Sbjct 18585 CCACCACGTAGGCGCAACACCAAGTGAAGTGTTGATTCCTTTTGAATATTATAATCGGAC 18526 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||||||||||||||| || ||| | || | | ||| ||||| || Sbjct 18525 AATGTGCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGA 18466 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || ||| | | || ||||| | | | | |||||| || || Sbjct 18465 ATTCCCTCTTTGTCCTGAATCT-TGGCTTTGACATTTTCGATAGTGTCCGATGGTTCAAC 18407 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| ||||||| | ||||| || | || || || || || |||||||| Sbjct 18406 CTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAATATCTGCATTTT 18356 >seq2607 Length=223464 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | | |||| ||||||||||||||| |||||||| || || |||| | Sbjct 124805 CCACCACGTAGGCGCAACACCAAGTGAAGTGTTGATTCCTTTTGAATATTATAATCGGAC 124864 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||||||||||||||| || ||| | || | | ||| ||||| || Sbjct 124865 AATGTGCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGA 124924 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || ||| | | || ||||| | | | | |||||| || || Sbjct 124925 ATTCCCTCTTTGTCCTGAATCT-TGGCTTTGACATTTTCGATAGTGTCCGATGGTTCCAC 124983 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| ||||||| | ||||| || | || || || || || |||||||| Sbjct 124984 CTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAATATCTGCATTTT 125034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379227762122790