Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
SEQ18352 114 1e-20
SEQ18478 95.1 9e-15
seq9966 95.1 9e-15
seq5553 95.1 9e-15
seq2607 95.1 9e-15
>SEQ18352
Length=541547
Score = 114 bits (126), Expect = 1e-20
Identities = 165/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | | |||| ||| || |||||||| |||||||||||||||||||
Sbjct 389155 CCACCACGTAGACGCAAGACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAG 389096
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||| |||||||| || || ||| | || | | |||||| || ||
Sbjct 389095 AGGGTACGCCCATCCTCCAATTGCTTACCAGCAAAAATTAAACGTTGTTGGTCTGGTGGA 389036
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||||||||| ||||| |||||| | | ||| ||||| |||||| |
Sbjct 389035 ATACCTTCCTTATCCTGAATTTTAGCCTTGACATTTTCAATGGTGTCGGATGGCTCGACT 388976
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331
|| | || ||| |||| || ||||| ||||| ||||| |||||||| || ||
Sbjct 388975 TCCAAAGTAATGGTTTTACCAGTCAAAGTTTTCACAAAGATTTGCATGTTGAA 388923
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | | ||||| |||||||| |||||||| || ||||||||||| |
Sbjct 402200 CCGCCACGTAGGCGTAATACCAAATGAAGTGTGGATTCTTTCTGTATGTTGTAGTCAGAG 402141
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||||||||| || || | || | | |||||| || ||
Sbjct 402140 AGGGTGCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGA 402081
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||| ||||| ||||| |||||| | ||| |||||| | ||| |
Sbjct 402080 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACGTTCTCAATCGTGTCAGATGCTTCGACT 402021
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | || ||| ||||||| ||||| ||||||||||| || |||||
Sbjct 402020 TCCAATGTAATGGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 401974
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175
||||| || | || ||||| ||||| ||||||||||||| || || || ||||||
Sbjct 390962 TACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTACGACCATCTTC 390903
Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235
| ||||||||| ||| |||| | | |||||||| ||| | |||||| |||||
Sbjct 390902 AAGTTGTTTGCCAGCAAAGATTAAACGCTGTTGATCTGGGGGAATGCCTTCTTTATCTTG 390843
Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|||| ||| || | | ||| |||||| |||||| || | || ||| ||||
Sbjct 390842 GATTTTAGCCTTAACATTTTCAATGGTGTCAGATGGCTCGACCTCTAAAGTAATGGTTTT 390783
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| ||||| || || || || ||||||||
Sbjct 390782 GCCAGTCAAAGTCTTGACGAAGATTTGCAT 390753
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| ||||| || | | ||||| |||||||| ||||| || ||||||||||| ||||
Sbjct 400148 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 400089
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||||||||||||||| || ||| | || | | ||||||||| ||
Sbjct 400088 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 400029
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| || || || ||||| ||| || | ||| | ||| || |||
Sbjct 400028 ATGCCCTCTTTGTCTTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACC 399969
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | |||||| ||||||| ||||| || ||||||||||| |||||
Sbjct 399968 TCTAAGGTGATAGTTTTGCCTGTCAAAGTCTTTACAAAAATCTGCAT 399922
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || | || |||| || ||||| || || || ||||| || || || |
Sbjct 402429 TCCTCCGCGAAGACGCAGCACCAAATGGAGTGTAGACTCCTTCTGAATATTATAATCAGA 402370
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || || ||| |||||||||||||| ||| | || || | ||||||||| ||
Sbjct 402369 TAAAGTGCGACCATCCTCCAATTGTTTGCCAGCAAAAATGAGACGTTGTTGATCTGGAGG 402310
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| ||| || ||||| ||| | | || || || | ||| | | ||| ||||||
Sbjct 402309 AATGCCCTCTTTATCTTGAATCT-TAGCTTTAACATTCTCAATACTATCAGATGGCTCGA 402251
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | |||||| |||| |||||||| || || |||||||| |||||
Sbjct 402250 CCTCTAAGGTGATAGTTTTACCGGTCAAAGTCTTGACAAAAATCTGCAT 402202
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| ||||| || | | ||||| |||||||| ||||| || ||||||||||| ||||
Sbjct 401972 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 401913
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||||||||||||||| || ||| | || | | |||||| || ||
Sbjct 401912 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGGTCTGGAGGA 401853
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| || || || ||||| |||||| | ||| | | ||| || |||
Sbjct 401852 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTCTCAATACTATCAGATGGTTCGACC 401793
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | |||||| ||||||| || || || || || ||||| |||||
Sbjct 401792 TCTAAGGTGATCGTTTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401746
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| || || |||||||| ||||| || |||||||| | | || || |||||||
Sbjct 390277 ACCAAATGGAGAGTTGATTCCTTTTGGATATTGTAGTCAGATAAGGTGCGACCATCTTCC 390218
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
|| || || || ||| | || | | |||||||| || | ||||| |||||
Sbjct 390217 AACTGCTTACCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTATCTTGG 390158
Query 18237 ATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|||| | |||| ||| | | | ||| ||| |||||| || | |||||| ||||
Sbjct 390157 ATTT-TAGCTTTGACGTTCTCGATAGTATCAGACGGCTCGACCTCTAAGGTGATAGTTTT 390099
Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||||||| || ||||||||||| |||||
Sbjct 390098 ACCGGTCAAAGTCTTTACAAAAATCTGCAT 390069
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | | ||||| |||||||| ||||| || || ||||||||||| |
Sbjct 390523 CCACCACGTAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGTATGTTGTAGTCAGAT 390464
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || || ||||||||| || || || || | || | | || ||||| |||
Sbjct 390463 AAGGTACGACCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 390404
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| || || || ||||| |||||| | | ||| ||| ||| || || |
Sbjct 390403 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCAACT 390344
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | || ||| ||||||| ||||| || || ||||| || |||||
Sbjct 390343 TCCAATGTAATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 390297
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| ||||| || | | ||||| |||||||| ||||| || ||||||||||| ||||
Sbjct 400604 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 400545
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||||||||||||||| || ||| | || | | ||||||||| ||
Sbjct 400544 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 400485
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| || || || ||||| ||| || | ||| | ||| || |||
Sbjct 400484 ATGCCCTCTTTGTCTTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACC 400425
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | |||||| ||||||| || || || || || ||||| |||||
Sbjct 400424 TCTAAGGTGATCGTTTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 400378
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| ||||| || | | ||||| |||||||| ||||| || ||||||||||| ||||
Sbjct 401516 CCACCCCGAAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGAA 401457
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||||||||||||||| || ||| | || | | ||||||||| ||
Sbjct 401456 AGAGTACGTCCATCTTCCAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGA 401397
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| || || || ||||| ||| || | ||| | ||| || |||
Sbjct 401396 ATGCCCTCTTTGTCTTGAATTTTAGCCTTAACGTTCTCAATGCTATCAGATGGTTCGACC 401337
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | |||||| ||||||| || || || || || ||||| |||||
Sbjct 401336 TCTAAGGTGATCGTTTTGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401290
>SEQ18478
Length=82247
Score = 95.1 bits (104), Expect = 9e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| |||||||| || || ||||||||||||||||||| | || | ||||||
Sbjct 41430 ACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGATAAGGTGCGTCCATCTTCA 41489
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
| ||| ||||| || | || | | ||||||||| || | ||| ||||||||
Sbjct 41490 AGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGG 41549
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|||| ||| || | | ||| ||||| ||||| ||| | ||||| | |||
Sbjct 41550 ATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTCAACTTCCAAAGTGATAGTCTTG 41609
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||||||| ||||| || || || ||||||||
Sbjct 41610 CCGGTCAAAGTTTTAACGAATATCTGCATTTT 41641
>seq9966
Length=18433
Score = 95.1 bits (104), Expect = 9e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| |||| | | |||| |||||||| || || |||||||||||||||||||
Sbjct 14123 CCTCCACGTAAACGCAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGAT 14182
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||| | ||| ||||| || | || | | ||||||||| ||
Sbjct 14183 AAGGTGCGTCCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 14242
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| |||||||| |||| ||| || | | ||| ||||| ||||| |
Sbjct 14243 ATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTCAACT 14302
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| | ||||| | ||||||||||| ||||| || || || ||||||||
Sbjct 14303 TCCAAAGTGATAGTCTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTT 14352
>seq5553
Length=18996
Score = 95.1 bits (104), Expect = 9e-15
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | | |||| ||||||||||||||| |||||||| || || |||| |
Sbjct 18585 CCACCACGTAGGCGCAACACCAAGTGAAGTGTTGATTCCTTTTGAATATTATAATCGGAC 18526
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || ||||||||||||||| || ||| | || | | ||| ||||| ||
Sbjct 18525 AATGTGCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGA 18466
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || || || || ||| | | || ||||| | | | | |||||| || ||
Sbjct 18465 ATTCCCTCTTTGTCCTGAATCT-TGGCTTTGACATTTTCGATAGTGTCCGATGGTTCAAC 18407
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||| ||||||| | ||||| || | || || || || || ||||||||
Sbjct 18406 CTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAATATCTGCATTTT 18356
>seq2607
Length=223464
Score = 95.1 bits (104), Expect = 9e-15
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || ||||| | | |||| ||||||||||||||| |||||||| || || |||| |
Sbjct 124805 CCACCACGTAGGCGCAACACCAAGTGAAGTGTTGATTCCTTTTGAATATTATAATCGGAC 124864
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || ||||||||||||||| || ||| | || | | ||| ||||| ||
Sbjct 124865 AATGTGCGACCATCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCTGGAGGA 124924
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || || || || ||| | | || ||||| | | | | |||||| || ||
Sbjct 124925 ATTCCCTCTTTGTCCTGAATCT-TGGCTTTGACATTTTCGATAGTGTCCGATGGTTCCAC 124983
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|||| ||||||| | ||||| || | || || || || || ||||||||
Sbjct 124984 CTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTAACGAATATCTGCATTTT 125034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379227762122790
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