Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
SEQ19926 131 3e-25
SEQ23413 127 4e-24
SEQ14824 127 4e-24
SEQ11801 122 2e-22
SEQ19298 98.7 2e-15
>SEQ19926
Length=251428
Score = 131 bits (144), Expect = 3e-25
Identities = 284/413 (69%), Gaps = 18/413 (4%)
Strand=Plus/Plus
Query 35321 AAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTA 35380
||||| ||||| || ||| | | ||| | || || | |||||| || | || |||
Sbjct 63825 AAGAATATACATATTTGGGATGGGAATAGTTCCCGTGCATTTTTAGATAAACTTGGTTTA 63884
Query 35381 TACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGT 35440
|||| | | ||| || ||||| ||||| || || || || |||||||||||||| |||
Sbjct 63885 CACGAACGTGAAGAAGGCGATTTAGGACCAGTTTATGGCTTTCAATGGCGTCATTTCGGT 63944
Query 35441 GCTGAATAT---GATACCTGTTCTTCCGATTATACTGGAAAG--GGTATTGATCAATTGG 35495
|| |||||| ||| | | || | ||||| | | || | |||||||||||| |
Sbjct 63945 GCAGAATATAAGGAT-CGTCATCAT--GATTACA--GCAATGAAGGTATTGATCAACTTA 63999
Query 35496 CCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCAT 35555
|| | | | || | | ||||||| ||||||||||||| || ||| | ||||
Sbjct 64000 AAAACGTTATTGATACTATACGTACAAATCCAAATGATAGAAGGATTATAATGTCTGCAT 64059
Query 35556 GGAATCCTATG-GATCTTCACCT--TATGGCTCTTCCTCCATGCCACATGACT-GCTCAA 35611
||||||| ||| ||| | |||| ||||| || || |||||||| || | |||||
Sbjct 64060 GGAATCC-ATGTGATAT--ACCTAAAATGGCACTACCACCATGCCA-TTGTTTAGCTCAG 64115
Query 35612 TTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGG 35671
|||| || ||||| | || || || || || | |||||||| || | ||| | ||
Sbjct 64116 TTTTTCGTAGCTAACGATGAGTTATCTTGTCAACTATATCAGCGCAGTGCTGATATGGGT 64175
Query 35672 TTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC 35724
| || || || || |||||||| || || || | || || ||| |||| ||
Sbjct 64176 CTTGGTGTTCCATTTAATATTGCCTCTTATGCTTTACTTACGCATATGATTGC 64228
>SEQ23413
Length=15718
Score = 127 bits (140), Expect = 4e-24
Identities = 218/315 (69%), Gaps = 5/315 (2%)
Strand=Plus/Minus
Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978
|||| |||||||| |||||||| || || || ||||| || || | |||||||||
Sbjct 934 TTGCTTTTGCTGCTGTTGAAGGTATATTTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGT 875
Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038
| ||| | | || || ||||||||| | || | || ||||| || |||||| | || |
Sbjct 874 TAAAGCAACGTGGCATCTTGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATG 815
Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC-CCCA 102097
| || | ||| | |||||||||||| | |||| || | |||| || || |||
Sbjct 814 AGGGATTACATTGTGACTTTGCATGCCTTATGTTTCAACA----TTTGGTGCAACGTCCA 759
Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157
|| | || | ||| |||||||| | || || || || ||||||| |||| || ||
Sbjct 758 TCTAAGCAACGTATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTA 699
Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217
|| || | || ||||||| | | || ||||| ||||| | ||| || || ||
Sbjct 698 ACTGTAGCTTTGTCTGTTAATCTCCTTGGTATGAATTGCAAACTCATGTCTCAATATATC 639
Query 102218 GAATTTGTGGCAGAT 102232
|||||||| || |||
Sbjct 638 GAATTTGTCGCTGAT 624
>SEQ14824
Length=19491
Score = 127 bits (140), Expect = 4e-24
Identities = 218/315 (69%), Gaps = 5/315 (2%)
Strand=Plus/Minus
Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978
|||| |||||||| |||||||| || || || ||||| || || | |||||||||
Sbjct 5270 TTGCTTTTGCTGCTGTTGAAGGTATATTTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGT 5211
Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038
| ||| | | || || ||||||||| | || | || ||||| || |||||| | || |
Sbjct 5210 TAAAGCAACGTGGCATCTTGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATG 5151
Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC-CCCA 102097
| || | ||| | |||||||||||| | |||| || | |||| || || |||
Sbjct 5150 AGGGATTACATTGTGACTTTGCATGCCTTATGTTTCAACA----TTTGGTGCAACGTCCA 5095
Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157
|| | || | ||| |||||||| | || || || || ||||||| |||| || ||
Sbjct 5094 TCTAAGCAACGTATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTA 5035
Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217
|| || | || ||||||| | | || ||||| ||||| | ||| || || ||
Sbjct 5034 ACTGTAGCTTTGTCTGTTAATCTCCTTGGTATGAATTGCAAACTCATGTCTCAATATATC 4975
Query 102218 GAATTTGTGGCAGAT 102232
|||||||| || |||
Sbjct 4974 GAATTTGTCGCTGAT 4960
Score = 127 bits (140), Expect = 4e-24
Identities = 218/315 (69%), Gaps = 5/315 (2%)
Strand=Plus/Minus
Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978
|||| |||||||| |||||||| || || || ||||| || || | |||||||||
Sbjct 12069 TTGCTTTTGCTGCTGTTGAAGGTATATTTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGT 12010
Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038
| ||| | | || || ||||||||| | || | || ||||| || |||||| | || |
Sbjct 12009 TAAAGCAACGTGGCATCTTGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATG 11950
Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC-CCCA 102097
| || | ||| | |||||||||||| | |||| || | |||| || || |||
Sbjct 11949 AGGGATTACATTGTGACTTTGCATGCCTTATGTTTCAACA----TTTGGTGCAACGTCCA 11894
Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157
|| | || | ||| |||||||| | || || || || ||||||| |||| || ||
Sbjct 11893 TCTAAGCAACGTATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTA 11834
Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217
|| || | || ||||||| | | || ||||| ||||| | ||| || || ||
Sbjct 11833 ACTGTAGCTTTGTCTGTTAATCTCCTTGGTATGAATTGCAAACTCATGTCTCAATATATC 11774
Query 102218 GAATTTGTGGCAGAT 102232
|||||||| || |||
Sbjct 11773 GAATTTGTCGCTGAT 11759
>SEQ11801
Length=23874
Score = 122 bits (134), Expect = 2e-22
Identities = 217/315 (69%), Gaps = 5/315 (2%)
Strand=Plus/Plus
Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978
|||| |||||||| |||||||| || || || ||||| || || | |||||||||
Sbjct 20167 TTGCTTTTGCTGCGGTTGAAGGTATATTTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGT 20226
Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038
| ||| | | || || |||| |||| | || | || ||||| || |||||| | || |
Sbjct 20227 TAAAGCAACGTGGCATCTTGCATGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATG 20286
Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC-CCCA 102097
| || | ||| | |||||||||||| | |||| || | ||| || || |||
Sbjct 20287 AGGGATTACATTGTGACTTTGCATGCCTTATGTTTCAACA----CTTGGTGCAACGGCCA 20342
Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157
|| | || | ||| |||||||| | || || || || ||||||| |||| || ||
Sbjct 20343 TCTAAGCAACGTATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTA 20402
Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217
|| || | || ||||||| | | || ||||| ||||| | ||| ||| || ||
Sbjct 20403 ACTGTAGCTTTGTCTGTTAATCTCCTTGGTATGAATTGCAAACTTATGTCCCAATATATA 20462
Query 102218 GAATTTGTGGCAGAT 102232
|||||||| || |||
Sbjct 20463 GAATTTGTTGCCGAT 20477
>SEQ19298
Length=518036
Score = 98.7 bits (108), Expect = 2e-15
Identities = 125/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 94166 TCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCAC 94225
|||||||| | || | ||| ||||||||||| ||||| |||||| |||| || | ||
Sbjct 235374 TCACAAACATATTTAGTGCTATAGAAGCCAAGTTGCAAACTGCAATTTCATCTGGCGCAG 235433
Query 94226 TGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGT 94285
||||| || ||||| ||||| ||||| ||||||| | || | ||||| ||| |
Sbjct 235434 AGTACTCAACGATTTCTGTGCATAAATTACTGCACTTGATTGTTCCTAAATTTTGTTGAT 235493
Query 94286 TAGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337
|| || | |||| | ||||||| | || |||||| |||||||||||
Sbjct 235494 TACTTTTGCGATTGCATGAATCCTTATATAGCATATAAGGAGTTCCAGTTTC 235545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989265223450610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |