Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value SEQ19926 131 3e-25 SEQ23413 127 4e-24 SEQ14824 127 4e-24 SEQ11801 122 2e-22 SEQ19298 98.7 2e-15 >SEQ19926 Length=251428 Score = 131 bits (144), Expect = 3e-25 Identities = 284/413 (69%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 35321 AAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTA 35380 ||||| ||||| || ||| | | ||| | || || | |||||| || | || ||| Sbjct 63825 AAGAATATACATATTTGGGATGGGAATAGTTCCCGTGCATTTTTAGATAAACTTGGTTTA 63884 Query 35381 TACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGT 35440 |||| | | ||| || ||||| ||||| || || || || |||||||||||||| ||| Sbjct 63885 CACGAACGTGAAGAAGGCGATTTAGGACCAGTTTATGGCTTTCAATGGCGTCATTTCGGT 63944 Query 35441 GCTGAATAT---GATACCTGTTCTTCCGATTATACTGGAAAG--GGTATTGATCAATTGG 35495 || |||||| ||| | | || | ||||| | | || | |||||||||||| | Sbjct 63945 GCAGAATATAAGGAT-CGTCATCAT--GATTACA--GCAATGAAGGTATTGATCAACTTA 63999 Query 35496 CCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCAT 35555 || | | | || | | ||||||| ||||||||||||| || ||| | |||| Sbjct 64000 AAAACGTTATTGATACTATACGTACAAATCCAAATGATAGAAGGATTATAATGTCTGCAT 64059 Query 35556 GGAATCCTATG-GATCTTCACCT--TATGGCTCTTCCTCCATGCCACATGACT-GCTCAA 35611 ||||||| ||| ||| | |||| ||||| || || |||||||| || | ||||| Sbjct 64060 GGAATCC-ATGTGATAT--ACCTAAAATGGCACTACCACCATGCCA-TTGTTTAGCTCAG 64115 Query 35612 TTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGG 35671 |||| || ||||| | || || || || || | |||||||| || | ||| | || Sbjct 64116 TTTTTCGTAGCTAACGATGAGTTATCTTGTCAACTATATCAGCGCAGTGCTGATATGGGT 64175 Query 35672 TTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC 35724 | || || || || |||||||| || || || | || || ||| |||| || Sbjct 64176 CTTGGTGTTCCATTTAATATTGCCTCTTATGCTTTACTTACGCATATGATTGC 64228 >SEQ23413 Length=15718 Score = 127 bits (140), Expect = 4e-24 Identities = 218/315 (69%), Gaps = 5/315 (2%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| |||||||| |||||||| || || || ||||| || || | ||||||||| Sbjct 934 TTGCTTTTGCTGCTGTTGAAGGTATATTTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGT 875 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||| | | || || ||||||||| | || | || ||||| || |||||| | || | Sbjct 874 TAAAGCAACGTGGCATCTTGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATG 815 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC-CCCA 102097 | || | ||| | |||||||||||| | |||| || | |||| || || ||| Sbjct 814 AGGGATTACATTGTGACTTTGCATGCCTTATGTTTCAACA----TTTGGTGCAACGTCCA 759 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || | || | ||| |||||||| | || || || || ||||||| |||| || || Sbjct 758 TCTAAGCAACGTATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTA 699 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 || || | || ||||||| | | || ||||| ||||| | ||| || || || Sbjct 698 ACTGTAGCTTTGTCTGTTAATCTCCTTGGTATGAATTGCAAACTCATGTCTCAATATATC 639 Query 102218 GAATTTGTGGCAGAT 102232 |||||||| || ||| Sbjct 638 GAATTTGTCGCTGAT 624 >SEQ14824 Length=19491 Score = 127 bits (140), Expect = 4e-24 Identities = 218/315 (69%), Gaps = 5/315 (2%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| |||||||| |||||||| || || || ||||| || || | ||||||||| Sbjct 5270 TTGCTTTTGCTGCTGTTGAAGGTATATTTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGT 5211 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||| | | || || ||||||||| | || | || ||||| || |||||| | || | Sbjct 5210 TAAAGCAACGTGGCATCTTGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATG 5151 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC-CCCA 102097 | || | ||| | |||||||||||| | |||| || | |||| || || ||| Sbjct 5150 AGGGATTACATTGTGACTTTGCATGCCTTATGTTTCAACA----TTTGGTGCAACGTCCA 5095 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || | || | ||| |||||||| | || || || || ||||||| |||| || || Sbjct 5094 TCTAAGCAACGTATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTA 5035 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 || || | || ||||||| | | || ||||| ||||| | ||| || || || Sbjct 5034 ACTGTAGCTTTGTCTGTTAATCTCCTTGGTATGAATTGCAAACTCATGTCTCAATATATC 4975 Query 102218 GAATTTGTGGCAGAT 102232 |||||||| || ||| Sbjct 4974 GAATTTGTCGCTGAT 4960 Score = 127 bits (140), Expect = 4e-24 Identities = 218/315 (69%), Gaps = 5/315 (2%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| |||||||| |||||||| || || || ||||| || || | ||||||||| Sbjct 12069 TTGCTTTTGCTGCTGTTGAAGGTATATTTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGT 12010 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||| | | || || ||||||||| | || | || ||||| || |||||| | || | Sbjct 12009 TAAAGCAACGTGGCATCTTGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATG 11950 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC-CCCA 102097 | || | ||| | |||||||||||| | |||| || | |||| || || ||| Sbjct 11949 AGGGATTACATTGTGACTTTGCATGCCTTATGTTTCAACA----TTTGGTGCAACGTCCA 11894 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || | || | ||| |||||||| | || || || || ||||||| |||| || || Sbjct 11893 TCTAAGCAACGTATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTA 11834 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 || || | || ||||||| | | || ||||| ||||| | ||| || || || Sbjct 11833 ACTGTAGCTTTGTCTGTTAATCTCCTTGGTATGAATTGCAAACTCATGTCTCAATATATC 11774 Query 102218 GAATTTGTGGCAGAT 102232 |||||||| || ||| Sbjct 11773 GAATTTGTCGCTGAT 11759 >SEQ11801 Length=23874 Score = 122 bits (134), Expect = 2e-22 Identities = 217/315 (69%), Gaps = 5/315 (2%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| |||||||| |||||||| || || || ||||| || || | ||||||||| Sbjct 20167 TTGCTTTTGCTGCGGTTGAAGGTATATTTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGT 20226 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||| | | || || |||| |||| | || | || ||||| || |||||| | || | Sbjct 20227 TAAAGCAACGTGGCATCTTGCATGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATG 20286 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC-CCCA 102097 | || | ||| | |||||||||||| | |||| || | ||| || || ||| Sbjct 20287 AGGGATTACATTGTGACTTTGCATGCCTTATGTTTCAACA----CTTGGTGCAACGGCCA 20342 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 || | || | ||| |||||||| | || || || || ||||||| |||| || || Sbjct 20343 TCTAAGCAACGTATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTA 20402 Query 102158 ACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATT 102217 || || | || ||||||| | | || ||||| ||||| | ||| ||| || || Sbjct 20403 ACTGTAGCTTTGTCTGTTAATCTCCTTGGTATGAATTGCAAACTTATGTCCCAATATATA 20462 Query 102218 GAATTTGTGGCAGAT 102232 |||||||| || ||| Sbjct 20463 GAATTTGTTGCCGAT 20477 >SEQ19298 Length=518036 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 94166 TCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCAC 94225 |||||||| | || | ||| ||||||||||| ||||| |||||| |||| || | || Sbjct 235374 TCACAAACATATTTAGTGCTATAGAAGCCAAGTTGCAAACTGCAATTTCATCTGGCGCAG 235433 Query 94226 TGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGT 94285 ||||| || ||||| ||||| ||||| ||||||| | || | ||||| ||| | Sbjct 235434 AGTACTCAACGATTTCTGTGCATAAATTACTGCACTTGATTGTTCCTAAATTTTGTTGAT 235493 Query 94286 TAGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337 || || | |||| | ||||||| | || |||||| ||||||||||| Sbjct 235494 TACTTTTGCGATTGCATGAATCCTTATATAGCATATAAGGAGTTCCAGTTTC 235545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989265223450610