Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value SEQ23413 150 2e-31 SEQ14824 150 2e-31 SEQ11801 131 2e-25 >SEQ23413 Length=15718 Score = 150 bits (166), Expect = 2e-31 Identities = 296/433 (68%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 || || | ||| || | |||||| | ||| || |||||||||||||| | | |||||| Sbjct 607 AGCTCAACTAGCAAACGATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTC 666 Query 13749 ATACCTATTAGTTTTACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 13807 ||||| | || || |||| || || | ||| || |||||||| || ||||| Sbjct 667 ATACCAAGGAGATTAACAGACAAAGCTACAG-TTAGGAACTCTTTTTCAATTTTAACAGC 725 Query 13808 CTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 ||| ||||||| ||||| | ||||| ||| | | | ||||| ||| || Sbjct 726 ATCTGTTATAATTTCAATAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACAT 785 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 | || ||||| |||||||| | |||||||| | | ||| | ||| || |||||||| Sbjct 786 AAGGCATGCAAAGTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGT 845 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAA 13985 ||| || |||| | || |||| |||||||| || || |||||||| | | | ||| Sbjct 846 TAAACCAGGCAAGATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAA 905 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 | ||||| || ||||| |||||||| || || | ||||| ||||| ||| |||| Sbjct 906 A--AATATACCTTCAACAGCAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTA 963 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 || ||||| | |||||||||| || || | ||| || |||||| Sbjct 964 GAAGAAATCCAAGATAGTGCCCATTCAGCCTTACGCTTTACCGCTGGCATGGTCTCAATA 1023 Query 14106 GCATTAAATAAAT 14118 |||||||| |||| Sbjct 1024 GCATTAAACAAAT 1036 Score = 125 bits (138), Expect = 7e-24 Identities = 208/297 (70%), Gaps = 5/297 (2%) Strand=Plus/Plus Query 14110 TAAATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 |||||||| || |||| |||| | | ||| | || | || ||||| | | |||||| Sbjct 1085 TAAATAAACATACCTT-TCTTCATGATCCTTAACAT--AAGTGTCAATCAAGATGCTATA 1141 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 |||||| || || | ||||| || ||||| ||||| || || |||||||||||||| | Sbjct 1142 CATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCTTCAGT 1201 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| | || | || | ||||| || ||||| ||||||||| ||| Sbjct 1202 AACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCAGAAGC 1261 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 ||||| || || || || | |||||||| || |||| | | || | ||| | ||| Sbjct 1262 AGCAAAGAAAGCTAAGATATGCTTAATAAAATAACGCTCGTTGTCATTCAATTTCTCCCA 1321 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| |||||||||| ||| || || || || || ||||||| ||| |||| Sbjct 1322 ATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAAAAAGAAGCCTCAGC 1378 >SEQ14824 Length=19491 Score = 150 bits (166), Expect = 2e-31 Identities = 296/433 (68%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 || || | ||| || | |||||| | ||| || |||||||||||||| | | |||||| Sbjct 4943 AGCTCAACTAGCAAACGATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTC 5002 Query 13749 ATACCTATTAGTTTTACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 13807 ||||| | || || |||| || || | ||| || |||||||| || ||||| Sbjct 5003 ATACCAAGGAGATTAACAGACAAAGCTACAG-TTAGGAACTCTTTTTCAATTTTAACAGC 5061 Query 13808 CTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 ||| ||||||| ||||| | ||||| ||| | | | ||||| ||| || Sbjct 5062 ATCTGTTATAATTTCAATAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACAT 5121 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 | || ||||| |||||||| | |||||||| | | ||| | ||| || |||||||| Sbjct 5122 AAGGCATGCAAAGTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGT 5181 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAA 13985 ||| || |||| | || |||| |||||||| || || |||||||| | | | ||| Sbjct 5182 TAAACCAGGCAAGATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAA 5241 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 | ||||| || ||||| |||||||| || || | ||||| ||||| ||| |||| Sbjct 5242 A--AATATACCTTCAACAGCAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTA 5299 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 || ||||| | |||||||||| || || | ||| || |||||| Sbjct 5300 GAAGAAATCCAAGATAGTGCCCATTCAGCCTTACGCTTTACCGCTGGCATGGTCTCAATA 5359 Query 14106 GCATTAAATAAAT 14118 |||||||| |||| Sbjct 5360 GCATTAAACAAAT 5372 Score = 150 bits (166), Expect = 2e-31 Identities = 296/433 (68%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 || || | ||| || | |||||| | ||| || |||||||||||||| | | |||||| Sbjct 11742 AGCTCAACTAGCAAACGATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTC 11801 Query 13749 ATACCTATTAGTTTTACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 13807 ||||| | || || |||| || || | ||| || |||||||| || ||||| Sbjct 11802 ATACCAAGGAGATTAACAGACAAAGCTACAG-TTAGGAACTCTTTTTCAATTTTAACAGC 11860 Query 13808 CTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 ||| ||||||| ||||| | ||||| ||| | | | ||||| ||| || Sbjct 11861 ATCTGTTATAATTTCAATAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACAT 11920 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 | || ||||| |||||||| | |||||||| | | ||| | ||| || |||||||| Sbjct 11921 AAGGCATGCAAAGTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGT 11980 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAA 13985 ||| || |||| | || |||| |||||||| || || |||||||| | | | ||| Sbjct 11981 TAAACCAGGCAAGATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAA 12040 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 | ||||| || ||||| |||||||| || || | ||||| ||||| ||| |||| Sbjct 12041 A--AATATACCTTCAACAGCAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTA 12098 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 || ||||| | |||||||||| || || | ||| || |||||| Sbjct 12099 GAAGAAATCCAAGATAGTGCCCATTCAGCCTTACGCTTTACCGCTGGCATGGTCTCAATA 12158 Query 14106 GCATTAAATAAAT 14118 |||||||| |||| Sbjct 12159 GCATTAAACAAAT 12171 Score = 127 bits (140), Expect = 2e-24 Identities = 211/300 (70%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCT 14164 |||||| |||| || |||| |||| | | ||| | || | || ||||| | | ||| Sbjct 5419 CATTAA-TAAACATACCTT-TCTTCATGATCCTTAACAT--AGGTGTCAATCAAGATGCT 5474 Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||||||| || || | ||||| || ||||| ||||| || || |||||||||||||| Sbjct 5475 ATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCTTC 5534 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||| ||||| | || | || | ||||| || ||||| ||||||||| Sbjct 5535 AGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCAGA 5594 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 ||| ||||| || || || || | ||||||||||| |||| | | || | ||| | Sbjct 5595 AGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTCTC 5654 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 |||||| |||||||||| ||| || || || || || ||||||| ||| |||| Sbjct 5655 CCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAAAAAGAAGCCTCAGC 5714 Score = 127 bits (140), Expect = 2e-24 Identities = 211/300 (70%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCT 14164 |||||| |||| || |||| |||| | | ||| | || | || ||||| | | ||| Sbjct 12218 CATTAA-TAAACATACCTT-TCTTCATGATCCTTAACAT--AGGTGTCAATCAAGATGCT 12273 Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||||||| || || | ||||| || ||||| ||||| || || |||||||||||||| Sbjct 12274 ATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCTTC 12333 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||| ||||| | || | || | ||||| || ||||| ||||||||| Sbjct 12334 AGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCAGA 12393 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 ||| ||||| || || || || | ||||||||||| |||| | | || | ||| | Sbjct 12394 AGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTCTC 12453 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 |||||| |||||||||| ||| || || || || || ||||||| ||| |||| Sbjct 12454 CCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAAAAAGAAGCCTCAGC 12513 >SEQ11801 Length=23874 Score = 131 bits (144), Expect = 2e-25 Identities = 209/297 (70%), Gaps = 5/297 (2%) Strand=Plus/Minus Query 14110 TAAATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 ||||||||||| |||| || | || | ||| ||| || || ||||| | | |||||| Sbjct 20017 TAAATAAATATACCTT-TCGTCATAATCCTT--AATATAGGTGTCAATCAAGATGCTATA 19961 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 |||||| || || | ||| |||||||| || ||||| || || |||||||||||||| | Sbjct 19960 CATTTCGGAATGGACGTTCTCCATAGCAATTTGAAATCCGTAGAAGCATCTAGCTTCAGC 19901 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| | || | || | ||||| || ||||| ||||||||| ||| Sbjct 19900 AACTTGAACTTCTTTGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCAGAAGC 19841 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 ||||| || || || || | |||| |||| | |||| | | || | ||| | ||| Sbjct 19840 AGCAAAGAAAGCTAAGATATGCTTAAGAAAGAAACGCTCGTTTTCTTTCAATTTCTCCCA 19781 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| |||||||||| ||| || || || || || ||| ||| ||| |||| Sbjct 19780 ATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAGAAAGAAGCCTCAGC 19724 Score = 125 bits (138), Expect = 7e-24 Identities = 234/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 13697 TAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 13756 ||| || | ||| |||| ||| || |||||||| ||||| | | ||||||||||| | Sbjct 20486 TAGCAAACGATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAG 20427 Query 13757 TAGTTTTACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTA 13815 || || |||| || || | ||| || |||||||| || ||||| ||| ||| Sbjct 20426 GAGATTAACAGACAAAGCTACAG-TTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTA 20368 Query 13816 TAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13875 |||| ||||| | ||||| || | | | |||| ||| || | || | Sbjct 20367 TAATTTCAATAATACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATG 20308 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 |||| |||||||| | |||||||| | | ||| | ||| || ||||||||||| || Sbjct 20307 CAAAGTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAT 20248 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAGAATAT 13993 ||| | || |||| |||||||| || || |||||||| | | | |||| ||||| Sbjct 20247 GCAAGATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATAT 20190 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 || ||||| |||||||| || || | ||||| ||||| Sbjct 20189 ACCTTCAACCGCAGCAAAAGCAATGATACGTTCACCAAA 20151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479577233482800