Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
SEQ23413 140 3e-28
SEQ14824 140 3e-28
SEQ11801 120 3e-22
>SEQ23413
Length=15718
Score = 140 bits (154), Expect = 3e-28
Identities = 254/369 (69%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553
|||||| | ||| || |||||||||||||| | | ||||||||||| | || || ||
Sbjct 624 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 683
Query 13554 AGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612
|| || || ||||| || |||||||| || ||||| || |||||||
Sbjct 684 AGACAAAGCTAC-AGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAA 742
Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672
||||| | ||||| ||| | | | ||||| ||| || | || ||||| ||||
Sbjct 743 TAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 802
Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732
|||| | |||||||| | | ||| | ||| || ||||||||||| || |||| | |
Sbjct 803 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 862
Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792
| |||| |||||||| || || ||||| || ||| || ||||| || ||||| |
Sbjct 863 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 922
Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAG 13852
||||||| || || | ||||| ||||| ||| |||| || ||||| | |
Sbjct 923 CAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGTG 982
Query 13853 CCCATTCAG 13861
|||||||||
Sbjct 983 CCCATTCAG 991
Score = 118 bits (130), Expect = 1e-21
Identities = 182/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992
|| || ||||| | | |||||||||||| || || | ||||| || ||||| |||||
Sbjct 1119 TAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAAT 1178
Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT 14052
|| || || ||||||||||| | ||| || || | || | || | || ||
Sbjct 1179 CCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTC 1238
Query 14053 TCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14112
|| ||||||||||||||| ||| ||||| || || || || | |||||||| || ||
Sbjct 1239 TCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATAACGC 1298
Query 14113 TCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14172
|| | | || | ||| | |||||| | |||||||||| ||| || || || || ||
Sbjct 1299 TCGTTGTCATTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACA 1358
Query 14173 GTCCAAAAACTAGCGACAGC 14192
||||||| ||| ||||
Sbjct 1359 ACCCAAAAAGAAGCCTCAGC 1378
>SEQ14824
Length=19491
Score = 140 bits (154), Expect = 3e-28
Identities = 254/369 (69%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553
|||||| | ||| || |||||||||||||| | | ||||||||||| | || || ||
Sbjct 4960 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 5019
Query 13554 AGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612
|| || || ||||| || |||||||| || ||||| || |||||||
Sbjct 5020 AGACAAAGCTAC-AGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAA 5078
Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672
||||| | ||||| ||| | | | ||||| ||| || | || ||||| ||||
Sbjct 5079 TAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 5138
Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732
|||| | |||||||| | | ||| | ||| || ||||||||||| || |||| | |
Sbjct 5139 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 5198
Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792
| |||| |||||||| || || ||||| || ||| || ||||| || ||||| |
Sbjct 5199 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 5258
Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAG 13852
||||||| || || | ||||| ||||| ||| |||| || ||||| | |
Sbjct 5259 CAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGTG 5318
Query 13853 CCCATTCAG 13861
|||||||||
Sbjct 5319 CCCATTCAG 5327
Score = 140 bits (154), Expect = 3e-28
Identities = 254/369 (69%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553
|||||| | ||| || |||||||||||||| | | ||||||||||| | || || ||
Sbjct 11759 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 11818
Query 13554 AGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612
|| || || ||||| || |||||||| || ||||| || |||||||
Sbjct 11819 AGACAAAGCTAC-AGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAA 11877
Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672
||||| | ||||| ||| | | | ||||| ||| || | || ||||| ||||
Sbjct 11878 TAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 11937
Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732
|||| | |||||||| | | ||| | ||| || ||||||||||| || |||| | |
Sbjct 11938 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 11997
Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792
| |||| |||||||| || || ||||| || ||| || ||||| || ||||| |
Sbjct 11998 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 12057
Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAG 13852
||||||| || || | ||||| ||||| ||| |||| || ||||| | |
Sbjct 12058 CAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGTG 12117
Query 13853 CCCATTCAG 13861
|||||||||
Sbjct 12118 CCCATTCAG 12126
Score = 122 bits (134), Expect = 8e-23
Identities = 183/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992
|| || ||||| | | |||||||||||| || || | ||||| || ||||| |||||
Sbjct 5455 TAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAAT 5514
Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT 14052
|| || || ||||||||||| | ||| || || | || | || | || ||
Sbjct 5515 CCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTC 5574
Query 14053 TCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14112
|| ||||||||||||||| ||| ||||| || || || || | ||||||||||| ||
Sbjct 5575 TCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGC 5634
Query 14113 TCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14172
|| | | || | ||| | |||||| | |||||||||| ||| || || || || ||
Sbjct 5635 TCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACA 5694
Query 14173 GTCCAAAAACTAGCGACAGC 14192
||||||| ||| ||||
Sbjct 5695 ACCCAAAAAGAAGCCTCAGC 5714
Score = 122 bits (134), Expect = 8e-23
Identities = 183/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992
|| || ||||| | | |||||||||||| || || | ||||| || ||||| |||||
Sbjct 12254 TAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAAT 12313
Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT 14052
|| || || ||||||||||| | ||| || || | || | || | || ||
Sbjct 12314 CCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTC 12373
Query 14053 TCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14112
|| ||||||||||||||| ||| ||||| || || || || | ||||||||||| ||
Sbjct 12374 TCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGC 12433
Query 14113 TCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14172
|| | | || | ||| | |||||| | |||||||||| ||| || || || || ||
Sbjct 12434 TCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACA 12493
Query 14173 GTCCAAAAACTAGCGACAGC 14192
||||||| ||| ||||
Sbjct 12494 ACCCAAAAAGAAGCCTCAGC 12513
>SEQ11801
Length=23874
Score = 120 bits (132), Expect = 3e-22
Identities = 225/328 (69%), Gaps = 2/328 (1%)
Strand=Plus/Minus
Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553
||| |||| ||| || |||||||| ||||| | | ||||||||||| | || || ||
Sbjct 20477 ATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAAC 20418
Query 13554 AGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612
|| || || ||||| || |||||||| || ||||| || |||||||
Sbjct 20417 AGACAAAGCTAC-AGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAA 20359
Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672
||||| | ||||| || | | | |||| ||| || | || ||||| ||||
Sbjct 20358 TAATACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCAC 20299
Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732
|||| | |||||||| | | ||| | ||| || ||||||||||| || ||| | |
Sbjct 20298 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGC 20239
Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792
| |||| |||||||| || || ||||| || ||| || ||||| || ||||| |
Sbjct 20238 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACCG 20179
Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAA 13820
||||||| || || | ||||| |||||
Sbjct 20178 CAGCAAAAGCAATGATACGTTCACCAAA 20151
Score = 113 bits (124), Expect = 4e-20
Identities = 204/295 (69%), Gaps = 5/295 (2%)
Strand=Plus/Minus
Query 13900 AATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957
||||||| | |||| || | || | ||| ||| || || ||||| | | ||||||||
Sbjct 20015 AATAAATATACCTT-TCGTCATAATCCTT--AATATAGGTGTCAATCAAGATGCTATACA 19959
Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017
|||| || || | ||| || ||||| || ||||| || || || ||||||||||| |
Sbjct 19958 TTTCGGAATGGACGTTCTCCATAGCAATTTGAAATCCGTAGAAGCATCTAGCTTCAGCAA 19899
Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077
||| || || | || | || | || || || ||||||||||||||| ||| |
Sbjct 19898 CTTGAACTTCTTTGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCAGAAGCAG 19839
Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137
|||| || || || || | |||| |||| | |||| | | || | ||| | |||||
Sbjct 19838 CAAAGAAAGCTAAGATATGCTTAAGAAAGAAACGCTCGTTTTCTTTCAATTTCTCCCAAT 19779
Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192
| | |||||||||| ||| || || || || || ||| ||| ||| ||||
Sbjct 19778 CATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAGAAAGAAGCCTCAGC 19724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478438391504880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |