Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value SEQ23413 140 3e-28 SEQ14824 140 3e-28 SEQ11801 120 3e-22 >SEQ23413 Length=15718 Score = 140 bits (154), Expect = 3e-28 Identities = 254/369 (69%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||| | ||| || |||||||||||||| | | ||||||||||| | || || || Sbjct 624 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 683 Query 13554 AGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 || || || ||||| || |||||||| || ||||| || ||||||| Sbjct 684 AGACAAAGCTAC-AGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAA 742 Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672 ||||| | ||||| ||| | | | ||||| ||| || | || ||||| |||| Sbjct 743 TAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 802 Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732 |||| | |||||||| | | ||| | ||| || ||||||||||| || |||| | | Sbjct 803 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 862 Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792 | |||| |||||||| || || ||||| || ||| || ||||| || ||||| | Sbjct 863 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 922 Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAG 13852 ||||||| || || | ||||| ||||| ||| |||| || ||||| | | Sbjct 923 CAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGTG 982 Query 13853 CCCATTCAG 13861 ||||||||| Sbjct 983 CCCATTCAG 991 Score = 118 bits (130), Expect = 1e-21 Identities = 182/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992 || || ||||| | | |||||||||||| || || | ||||| || ||||| ||||| Sbjct 1119 TAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAAT 1178 Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT 14052 || || || ||||||||||| | ||| || || | || | || | || || Sbjct 1179 CCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTC 1238 Query 14053 TCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14112 || ||||||||||||||| ||| ||||| || || || || | |||||||| || || Sbjct 1239 TCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATAACGC 1298 Query 14113 TCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14172 || | | || | ||| | |||||| | |||||||||| ||| || || || || || Sbjct 1299 TCGTTGTCATTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACA 1358 Query 14173 GTCCAAAAACTAGCGACAGC 14192 ||||||| ||| |||| Sbjct 1359 ACCCAAAAAGAAGCCTCAGC 1378 >SEQ14824 Length=19491 Score = 140 bits (154), Expect = 3e-28 Identities = 254/369 (69%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||| | ||| || |||||||||||||| | | ||||||||||| | || || || Sbjct 4960 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 5019 Query 13554 AGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 || || || ||||| || |||||||| || ||||| || ||||||| Sbjct 5020 AGACAAAGCTAC-AGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAA 5078 Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672 ||||| | ||||| ||| | | | ||||| ||| || | || ||||| |||| Sbjct 5079 TAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 5138 Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732 |||| | |||||||| | | ||| | ||| || ||||||||||| || |||| | | Sbjct 5139 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 5198 Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792 | |||| |||||||| || || ||||| || ||| || ||||| || ||||| | Sbjct 5199 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 5258 Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAG 13852 ||||||| || || | ||||| ||||| ||| |||| || ||||| | | Sbjct 5259 CAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGTG 5318 Query 13853 CCCATTCAG 13861 ||||||||| Sbjct 5319 CCCATTCAG 5327 Score = 140 bits (154), Expect = 3e-28 Identities = 254/369 (69%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||| | ||| || |||||||||||||| | | ||||||||||| | || || || Sbjct 11759 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 11818 Query 13554 AGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 || || || ||||| || |||||||| || ||||| || ||||||| Sbjct 11819 AGACAAAGCTAC-AGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAA 11877 Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672 ||||| | ||||| ||| | | | ||||| ||| || | || ||||| |||| Sbjct 11878 TAATACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCAC 11937 Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732 |||| | |||||||| | | ||| | ||| || ||||||||||| || |||| | | Sbjct 11938 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGC 11997 Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792 | |||| |||||||| || || ||||| || ||| || ||||| || ||||| | Sbjct 11998 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAG 12057 Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAG 13852 ||||||| || || | ||||| ||||| ||| |||| || ||||| | | Sbjct 12058 CAGCAAAAGCAATGATACGTTCACCAAAGTTTGCACTTTTAGAAGAAATCCAAGATAGTG 12117 Query 13853 CCCATTCAG 13861 ||||||||| Sbjct 12118 CCCATTCAG 12126 Score = 122 bits (134), Expect = 8e-23 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992 || || ||||| | | |||||||||||| || || | ||||| || ||||| ||||| Sbjct 5455 TAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAAT 5514 Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT 14052 || || || ||||||||||| | ||| || || | || | || | || || Sbjct 5515 CCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTC 5574 Query 14053 TCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14112 || ||||||||||||||| ||| ||||| || || || || | ||||||||||| || Sbjct 5575 TCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGC 5634 Query 14113 TCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14172 || | | || | ||| | |||||| | |||||||||| ||| || || || || || Sbjct 5635 TCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACA 5694 Query 14173 GTCCAAAAACTAGCGACAGC 14192 ||||||| ||| |||| Sbjct 5695 ACCCAAAAAGAAGCCTCAGC 5714 Score = 122 bits (134), Expect = 8e-23 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 13933 TATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992 || || ||||| | | |||||||||||| || || | ||||| || ||||| ||||| Sbjct 12254 TAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAAT 12313 Query 13993 CCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT 14052 || || || ||||||||||| | ||| || || | || | || | || || Sbjct 12314 CCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTC 12373 Query 14053 TCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGC 14112 || ||||||||||||||| ||| ||||| || || || || | ||||||||||| || Sbjct 12374 TCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGC 12433 Query 14113 TCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14172 || | | || | ||| | |||||| | |||||||||| ||| || || || || || Sbjct 12434 TCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTCCACA 12493 Query 14173 GTCCAAAAACTAGCGACAGC 14192 ||||||| ||| |||| Sbjct 12494 ACCCAAAAAGAAGCCTCAGC 12513 >SEQ11801 Length=23874 Score = 120 bits (132), Expect = 3e-22 Identities = 225/328 (69%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 ||| |||| ||| || |||||||| ||||| | | ||||||||||| | || || || Sbjct 20477 ATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAAC 20418 Query 13554 AGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 || || || ||||| || |||||||| || ||||| || ||||||| Sbjct 20417 AGACAAAGCTAC-AGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAA 20359 Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672 ||||| | ||||| || | | | |||| ||| || | || ||||| |||| Sbjct 20358 TAATACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCAC 20299 Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732 |||| | |||||||| | | ||| | ||| || ||||||||||| || ||| | | Sbjct 20298 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGC 20239 Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792 | |||| |||||||| || || ||||| || ||| || ||||| || ||||| | Sbjct 20238 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACCG 20179 Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAA 13820 ||||||| || || | ||||| ||||| Sbjct 20178 CAGCAAAAGCAATGATACGTTCACCAAA 20151 Score = 113 bits (124), Expect = 4e-20 Identities = 204/295 (69%), Gaps = 5/295 (2%) Strand=Plus/Minus Query 13900 AATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 ||||||| | |||| || | || | ||| ||| || || ||||| | | |||||||| Sbjct 20015 AATAAATATACCTT-TCGTCATAATCCTT--AATATAGGTGTCAATCAAGATGCTATACA 19959 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 |||| || || | ||| || ||||| || ||||| || || || ||||||||||| | Sbjct 19958 TTTCGGAATGGACGTTCTCCATAGCAATTTGAAATCCGTAGAAGCATCTAGCTTCAGCAA 19899 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 ||| || || | || | || | || || || ||||||||||||||| ||| | Sbjct 19898 CTTGAACTTCTTTGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCAGAAGCAG 19839 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 |||| || || || || | |||| |||| | |||| | | || | ||| | ||||| Sbjct 19838 CAAAGAAAGCTAAGATATGCTTAAGAAAGAAACGCTCGTTTTCTTTCAATTTCTCCCAAT 19779 Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 | | |||||||||| ||| || || || || || ||| ||| ||| |||| Sbjct 19778 CATCCAAATCCTTAGCAAGGTCAACCTCTTCCACAACCCAGAAAGAAGCCTCAGC 19724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478438391504880