Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
SEQ19926 172 8e-38
SEQ24359 95.1 2e-14
SEQ19298 89.7 8e-13
seq6381 86.0 9e-12
>SEQ19926
Length=251428
Score = 172 bits (190), Expect = 8e-38
Identities = 328/479 (68%), Gaps = 12/479 (3%)
Strand=Plus/Plus
Query 70151 GGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGG 70210
||| |||||||| | | | | ||||| ||| | || ||||||| ||||| |||
Sbjct 63984 GGTATTGATCAACTTAAAAACGTTATTGATACTATACGTACAAATCCAAATGATAGAAGG 64043
Query 70211 ATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC 70270
|| |||||| |||||||||| ||| | | |||||||||||||||| || ||
Sbjct 64044 ATTATAATGTCTGCATGGAATCCATGTGATATACCTAAAATGGCACTACCACCATGCCAT 64103
Query 70271 TGTTTGGCTCAGTTTTACTCGT-----ACGATGGCAAATTGTCATGCTTAATGTATCAGA 70325
||||| |||||||||| |||| |||||| | || || || | | ||||||
Sbjct 64104 TGTTTAGCTCAGTTTT--TCGTAGCTAACGATG---AGTTATCTTGTCAACTATATCAGC 64158
Query 70326 GGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGC 70385
| ||||| || ||||| || ||||| || ||||| ||||| ||| || | | ||||
Sbjct 64159 GCAGTGCTGATATGGGTCTTGGTGTTCCATTTAATATTGCCTCTTATGCTTTACTTACGC 64218
Query 70386 ACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG-TTCGTACACACCATTGGCGAC 70444
| |||||||| || ||| ||| | ||||| | || |||||||| || || ||
Sbjct 64219 ATATGATTGCGCATGTTA-CGGGATTAAAGCCTGGTTGTTTTGTACACACTATGGGTGAT 64277
Query 70445 GCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGA 70504
| || || ||| ||||| |||| || ||||||| |||||| |||| || |||
Sbjct 64278 ACGCATGTATATAAGAATCATGTCGAACCTTTAAAGGAGCAACTTAAACGTATTCCAAGA 64337
Query 70505 CCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAA 70564
||||||| || || | ||| |||| ||| |||||| ||||| | ||
Sbjct 64338 GCTTTTCCAAAATTGCTTATAAAACGTGAAGTAAAAAGTATTGAAGATTTTACCTTTGAT 64397
Query 70565 GATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTA 70623
|||||| ||||| || || ||||||| ||||| || | |||| ||||||||||
Sbjct 64398 GATTTTGAAATAATTGGCTATAATCCATATCCTAAAATCCAAATGGAGATGGCTGTTTA 64456
>SEQ24359
Length=906208
Score = 95.1 bits (104), Expect = 2e-14
Identities = 156/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099
|| || ||||| ||||| ||||| ||| | | || ||||| || ||||| |||
Sbjct 358203 TATAAAACTGTATGGGAAATTCCTGTTAAGGCTATTATAAGAATGGCAGCAGACAGGGGT 358144
Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA--CAGTC 98157
| | ||||| || ||||| || |||||| | || || || ||||| | || ||
Sbjct 358143 GCTTTTATTGATCAAAGTCAGTCATTCAATATTTATGTGGCAGAGCCAAATTATGCAAAA 358084
Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217
|| ||||| ||||| |||||||||||||| || | || || || ||||||||||
Sbjct 358083 TTA--ACTTCAATACATTTTTACGCATGGAAAGCTGGATTAAAAACTGGAATGTACTATC 358026
Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260
| |||||||| | || | ||||| || | ||||| |||||
Sbjct 358025 TAAGAACAAAACCAGCAGCTAATGCTATTCAGTTTACTGTGGA 357983
Score = 86.0 bits (94), Expect = 9e-12
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 96829 TAGTGCCAATGCTCAGAATGTACAATGCAATGT--CACGATACGTTACACAGGGCGGCAA 96886
|||| |||||| | | | | | || |||||| || |||| ||| || |||||
Sbjct 359426 TAGTACCAATGTTAAAAGTTTTTAA--CAATGTGGCAAGATATGTTGACCAAGGCGGTGG 359369
Query 96887 TAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTT 96946
|||| |||| || ||| | ||| | ||| | ||||||||||| | || | ||||||||
Sbjct 359368 TAAAAGGCCTGGAGCTTTTGCCATTTACCTAGAACCTTGGCATCCCGATATATTTGACTT 359309
Query 96947 TATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGC 97006
| | || | |||||| |||| ||||| ||||| | || || ||||||||
Sbjct 359308 TTTAGATCTTAAAAAAAACACTGGTAAAGAAGAAAACCGAGCTCGAGATTTATTTTATGC 359249
Query 97007 ACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039
||||||| | || ||||| || ||||| || ||
Sbjct 359248 ACTCTGGATTCCTGATTTATTTATGAAACGTGT 359216
>SEQ19298
Length=518036
Score = 89.7 bits (98), Expect = 8e-13
Identities = 326/502 (65%), Gaps = 10/502 (2%)
Strand=Plus/Minus
Query 97764 ATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACT 97823
||||| | || ||| | ||||| ||| | || | || || ||||| || || | ||
Sbjct 234978 ATTGCACAATATGGTGTTAGAAATTCTCTTCTTATTGCTCCAATGCCTACAGCATCAACA 234919
Query 97824 TCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGA 97883
| ||| | || || ||| ||||||||||||||| | || || || || || |||
Sbjct 234918 GCTCAAATATTAGGAAATAATGAATCTTTTGAACCATATACATCCAATATATATACAAGA 234859
Query 97884 CGCACCCAGTCTGGAGAGTTTCAA-TTGACCAACGTGCACTTGGTTCGAGA-CTTG--GA 97939
| ||||| || |||||| ||| | | | || ||| | |||| ||| ||
Sbjct 234858 AGGGTGTTATCTGGGGAATTTCAAGTTGTTAATCAT-CATTTGTTAAGAGATCTTACTGA 234800
Query 97940 ACGGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCAT 97999
|| | | ||||||| |||||| ||| | || ||||| | || | || || ||
Sbjct 234799 AC---TAGAACTGTGGAGCGATGAGATGAAAAATTTAATCATTTTGAATAGGGGTTCAAT 234743
Query 98000 TCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT 98059
|||||| ||| || || | | || || | || || | ||| ||||| ||
Sbjct 234742 TCAAAATATTGAAGGAATACCAAAGTATTTACGTGATTTATATAAAAATGTGTGGGAAAT 234683
Query 98060 TCCGACCAAGACG-CTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTC 98118
| ||| | || | || |||||||| || ||||| | | ||||| |||||||
Sbjct 234682 CTCTGTTAAGTCTACTATTAGA-ATGGCTGCTGATAGAGGAGCTTTTATTGATCAGAGTC 234624
Query 98119 AATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTT 98178
|||| || ||| | | || || ||||| | || | ||||||| ||||| |||
Sbjct 234623 AATCATTTAATATTCATGTGGCGGAGCCAAATTATGGAAAATTGACTTCAATACATTTTC 234564
Query 98179 ACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCA 98238
|||||||||| || | || || || ||||| ||||| |||||||| | || | |
Sbjct 234563 ACGCATGGAAAGCTGGATTAAAAACTGGAATGTATTATCTAAGAACAAAACCAGCAGCTA 234504
Query 98239 ATGCCATACCATTTACGGTGGA 98260
|||| || | ||||| |||||
Sbjct 234503 ATGCTATTCAGTTTACTGTGGA 234482
>seq6381
Length=114730
Score = 86.0 bits (94), Expect = 9e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 50129 AAGAGCTGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGA 50188
|||| ||||| || |||||||| ||||||||||| | | || || | || ||
Sbjct 65565 AAGACATGGCCAGTGGAGTATATTATCTACACGGCTACTCTGCCATCGGCGATAACGGGC 65624
Query 50189 GCCGATTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAG 50248
|| ||| | | ||||| ||| | |||||||| || || |||||||||| || | |
Sbjct 65625 GCGGATGTTGCTATATTTGCATCTTGCTTTGCTTATATCTCCGATGTGTCAACACTAAAA 65684
Query 50249 AATCGCACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGT 50308
|||||||| ||||||| ||| |||||| |||| |||| | |||||||| ||
Sbjct 65685 AATCGCACTTTACGAGTAACCATATTGGATATTTGCTACTTGAGTGCAATGCCAACTGGC 65744
Query 50309 GTGGC 50313
|| ||
Sbjct 65745 GTTGC 65749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740826303619920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |