Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value SEQ19926 172 8e-38 SEQ24359 95.1 2e-14 SEQ19298 89.7 8e-13 seq6381 86.0 9e-12 >SEQ19926 Length=251428 Score = 172 bits (190), Expect = 8e-38 Identities = 328/479 (68%), Gaps = 12/479 (3%) Strand=Plus/Plus Query 70151 GGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGG 70210 ||| |||||||| | | | | ||||| ||| | || ||||||| ||||| ||| Sbjct 63984 GGTATTGATCAACTTAAAAACGTTATTGATACTATACGTACAAATCCAAATGATAGAAGG 64043 Query 70211 ATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC 70270 || |||||| |||||||||| ||| | | |||||||||||||||| || || Sbjct 64044 ATTATAATGTCTGCATGGAATCCATGTGATATACCTAAAATGGCACTACCACCATGCCAT 64103 Query 70271 TGTTTGGCTCAGTTTTACTCGT-----ACGATGGCAAATTGTCATGCTTAATGTATCAGA 70325 ||||| |||||||||| |||| |||||| | || || || | | |||||| Sbjct 64104 TGTTTAGCTCAGTTTT--TCGTAGCTAACGATG---AGTTATCTTGTCAACTATATCAGC 64158 Query 70326 GGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGC 70385 | ||||| || ||||| || ||||| || ||||| ||||| ||| || | | |||| Sbjct 64159 GCAGTGCTGATATGGGTCTTGGTGTTCCATTTAATATTGCCTCTTATGCTTTACTTACGC 64218 Query 70386 ACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG-TTCGTACACACCATTGGCGAC 70444 | |||||||| || ||| ||| | ||||| | || |||||||| || || || Sbjct 64219 ATATGATTGCGCATGTTA-CGGGATTAAAGCCTGGTTGTTTTGTACACACTATGGGTGAT 64277 Query 70445 GCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGA 70504 | || || ||| ||||| |||| || ||||||| |||||| |||| || ||| Sbjct 64278 ACGCATGTATATAAGAATCATGTCGAACCTTTAAAGGAGCAACTTAAACGTATTCCAAGA 64337 Query 70505 CCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAA 70564 ||||||| || || | ||| |||| ||| |||||| ||||| | || Sbjct 64338 GCTTTTCCAAAATTGCTTATAAAACGTGAAGTAAAAAGTATTGAAGATTTTACCTTTGAT 64397 Query 70565 GATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTA 70623 |||||| ||||| || || ||||||| ||||| || | |||| |||||||||| Sbjct 64398 GATTTTGAAATAATTGGCTATAATCCATATCCTAAAATCCAAATGGAGATGGCTGTTTA 64456 >SEQ24359 Length=906208 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 || || ||||| ||||| ||||| ||| | | || ||||| || ||||| ||| Sbjct 358203 TATAAAACTGTATGGGAAATTCCTGTTAAGGCTATTATAAGAATGGCAGCAGACAGGGGT 358144 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA--CAGTC 98157 | | ||||| || ||||| || |||||| | || || || ||||| | || || Sbjct 358143 GCTTTTATTGATCAAAGTCAGTCATTCAATATTTATGTGGCAGAGCCAAATTATGCAAAA 358084 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 || ||||| ||||| |||||||||||||| || | || || || |||||||||| Sbjct 358083 TTA--ACTTCAATACATTTTTACGCATGGAAAGCTGGATTAAAAACTGGAATGTACTATC 358026 Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 | |||||||| | || | ||||| || | ||||| ||||| Sbjct 358025 TAAGAACAAAACCAGCAGCTAATGCTATTCAGTTTACTGTGGA 357983 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 96829 TAGTGCCAATGCTCAGAATGTACAATGCAATGT--CACGATACGTTACACAGGGCGGCAA 96886 |||| |||||| | | | | | || |||||| || |||| ||| || ||||| Sbjct 359426 TAGTACCAATGTTAAAAGTTTTTAA--CAATGTGGCAAGATATGTTGACCAAGGCGGTGG 359369 Query 96887 TAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTT 96946 |||| |||| || ||| | ||| | ||| | ||||||||||| | || | |||||||| Sbjct 359368 TAAAAGGCCTGGAGCTTTTGCCATTTACCTAGAACCTTGGCATCCCGATATATTTGACTT 359309 Query 96947 TATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGC 97006 | | || | |||||| |||| ||||| ||||| | || || |||||||| Sbjct 359308 TTTAGATCTTAAAAAAAACACTGGTAAAGAAGAAAACCGAGCTCGAGATTTATTTTATGC 359249 Query 97007 ACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039 ||||||| | || ||||| || ||||| || || Sbjct 359248 ACTCTGGATTCCTGATTTATTTATGAAACGTGT 359216 >SEQ19298 Length=518036 Score = 89.7 bits (98), Expect = 8e-13 Identities = 326/502 (65%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 97764 ATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACT 97823 ||||| | || ||| | ||||| ||| | || | || || ||||| || || | || Sbjct 234978 ATTGCACAATATGGTGTTAGAAATTCTCTTCTTATTGCTCCAATGCCTACAGCATCAACA 234919 Query 97824 TCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGA 97883 | ||| | || || ||| ||||||||||||||| | || || || || || ||| Sbjct 234918 GCTCAAATATTAGGAAATAATGAATCTTTTGAACCATATACATCCAATATATATACAAGA 234859 Query 97884 CGCACCCAGTCTGGAGAGTTTCAA-TTGACCAACGTGCACTTGGTTCGAGA-CTTG--GA 97939 | ||||| || |||||| ||| | | | || ||| | |||| ||| || Sbjct 234858 AGGGTGTTATCTGGGGAATTTCAAGTTGTTAATCAT-CATTTGTTAAGAGATCTTACTGA 234800 Query 97940 ACGGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCAT 97999 || | | ||||||| |||||| ||| | || ||||| | || | || || || Sbjct 234799 AC---TAGAACTGTGGAGCGATGAGATGAAAAATTTAATCATTTTGAATAGGGGTTCAAT 234743 Query 98000 TCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT 98059 |||||| ||| || || | | || || | || || | ||| ||||| || Sbjct 234742 TCAAAATATTGAAGGAATACCAAAGTATTTACGTGATTTATATAAAAATGTGTGGGAAAT 234683 Query 98060 TCCGACCAAGACG-CTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTC 98118 | ||| | || | || |||||||| || ||||| | | ||||| ||||||| Sbjct 234682 CTCTGTTAAGTCTACTATTAGA-ATGGCTGCTGATAGAGGAGCTTTTATTGATCAGAGTC 234624 Query 98119 AATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTT 98178 |||| || ||| | | || || ||||| | || | ||||||| ||||| ||| Sbjct 234623 AATCATTTAATATTCATGTGGCGGAGCCAAATTATGGAAAATTGACTTCAATACATTTTC 234564 Query 98179 ACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCA 98238 |||||||||| || | || || || ||||| ||||| |||||||| | || | | Sbjct 234563 ACGCATGGAAAGCTGGATTAAAAACTGGAATGTATTATCTAAGAACAAAACCAGCAGCTA 234504 Query 98239 ATGCCATACCATTTACGGTGGA 98260 |||| || | ||||| ||||| Sbjct 234503 ATGCTATTCAGTTTACTGTGGA 234482 >seq6381 Length=114730 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 50129 AAGAGCTGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGA 50188 |||| ||||| || |||||||| ||||||||||| | | || || | || || Sbjct 65565 AAGACATGGCCAGTGGAGTATATTATCTACACGGCTACTCTGCCATCGGCGATAACGGGC 65624 Query 50189 GCCGATTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAG 50248 || ||| | | ||||| ||| | |||||||| || || |||||||||| || | | Sbjct 65625 GCGGATGTTGCTATATTTGCATCTTGCTTTGCTTATATCTCCGATGTGTCAACACTAAAA 65684 Query 50249 AATCGCACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGT 50308 |||||||| ||||||| ||| |||||| |||| |||| | |||||||| || Sbjct 65685 AATCGCACTTTACGAGTAACCATATTGGATATTTGCTACTTGAGTGCAATGCCAACTGGC 65744 Query 50309 GTGGC 50313 || || Sbjct 65745 GTTGC 65749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740826303619920