Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value SEQ23413 147 2e-30 SEQ14824 138 1e-27 SEQ11801 129 5e-25 >SEQ23413 Length=15718 Score = 147 bits (162), Expect = 2e-30 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || |||||| || ||||| | |||||||||||||||||| | |||||| || |||||||| Sbjct 1115 AACATAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 1174 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 || || || || |||||||| || | || |||||||| | || | || |||| Sbjct 1175 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 1234 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 || |||||||| || || ||| ||||||||| ||||| | || ||||||||||| | Sbjct 1235 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATA 1294 Query 13600 tttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659 ||||| || ||| || |||||| ||||| || | | || ||||| || Sbjct 1295 ACGCTCGTTGTCATTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 1354 Query 13660 AACGGTCCAAAAAGAAGCAACAGCCT 13685 || |||||||||||| |||||| Sbjct 1355 CACAACCCAAAAAGAAGCCTCAGCCT 1380 Score = 111 bits (122), Expect = 1e-19 Identities = 221/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 ||||| ||||| || || || || ||| | | || ||||| || | | || ||| Sbjct 625 TCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAACA 684 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 | || |||| | |||| || | |||||| || | ||| || || | | || || | Sbjct 685 GACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAATA 744 Query 13106 ATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACA 13164 || ||||| || ||||| | | | ||| | |||||| | |||||||| ||||| Sbjct 745 AT-ACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 803 Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224 || ||||| ||||| | | |||| || || |||||||||| ||| |||| | || Sbjct 804 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 863 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 |||| || | ||| || ||||||||||| || |||||||| |||||||| || Sbjct 864 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAGC 923 Query 13285 TGCAAACGCTATCAACCTTTCACCA 13309 ||||| || || | | ||||||| Sbjct 924 AGCAAAAGCAATGATACGTTCACCA 948 >SEQ14824 Length=19491 Score = 138 bits (152), Expect = 1e-27 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||| || || ||||| | |||||||||||||||||| | |||||| || |||||||| Sbjct 5451 AACATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 5510 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 || || || || |||||||| || | || |||||||| | || | || |||| Sbjct 5511 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 5570 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 || |||||||| || || ||| ||||||||| ||||| | || ||||||||||| | Sbjct 5571 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 5630 Query 13600 tttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659 ||||| || || || |||||| ||||| || | | || ||||| || Sbjct 5631 ACGCTCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 5690 Query 13660 AACGGTCCAAAAAGAAGCAACAGCCT 13685 || |||||||||||| |||||| Sbjct 5691 CACAACCCAAAAAGAAGCCTCAGCCT 5716 Score = 138 bits (152), Expect = 1e-27 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||| || || ||||| | |||||||||||||||||| | |||||| || |||||||| Sbjct 12250 AACATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 12309 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 || || || || |||||||| || | || |||||||| | || | || |||| Sbjct 12310 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 12369 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 || |||||||| || || ||| ||||||||| ||||| | || ||||||||||| | Sbjct 12370 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 12429 Query 13600 tttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659 ||||| || || || |||||| ||||| || | | || ||||| || Sbjct 12430 ACGCTCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 12489 Query 13660 AACGGTCCAAAAAGAAGCAACAGCCT 13685 || |||||||||||| |||||| Sbjct 12490 CACAACCCAAAAAGAAGCCTCAGCCT 12515 Score = 111 bits (122), Expect = 1e-19 Identities = 221/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 ||||| ||||| || || || || ||| | | || ||||| || | | || ||| Sbjct 4961 TCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAACA 5020 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 | || |||| | |||| || | |||||| || | ||| || || | | || || | Sbjct 5021 GACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAATA 5080 Query 13106 ATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACA 13164 || ||||| || ||||| | | | ||| | |||||| | |||||||| ||||| Sbjct 5081 AT-ACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 5139 Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224 || ||||| ||||| | | |||| || || |||||||||| ||| |||| | || Sbjct 5140 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 5199 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 |||| || | ||| || ||||||||||| || |||||||| |||||||| || Sbjct 5200 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAGC 5259 Query 13285 TGCAAACGCTATCAACCTTTCACCA 13309 ||||| || || | | ||||||| Sbjct 5260 AGCAAAAGCAATGATACGTTCACCA 5284 Score = 111 bits (122), Expect = 1e-19 Identities = 221/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 ||||| ||||| || || || || ||| | | || ||||| || | | || ||| Sbjct 11760 TCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAACA 11819 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 | || |||| | |||| || | |||||| || | ||| || || | | || || | Sbjct 11820 GACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAATA 11879 Query 13106 ATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACA 13164 || ||||| || ||||| | | | ||| | |||||| | |||||||| ||||| Sbjct 11880 AT-ACGTTGCTTAGATGGACGTTGCACCAAATGTTGAAACATAAGGCATGCAAAGTCACA 11938 Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224 || ||||| ||||| | | |||| || || |||||||||| ||| |||| | || Sbjct 11939 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAAGATGCC 11998 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 |||| || | ||| || ||||||||||| || |||||||| |||||||| || Sbjct 11999 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACAGC 12058 Query 13285 TGCAAACGCTATCAACCTTTCACCA 13309 ||||| || || | | ||||||| Sbjct 12059 AGCAAAAGCAATGATACGTTCACCA 12083 >SEQ11801 Length=23874 Score = 129 bits (142), Expect = 5e-25 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||| || || ||||| | |||||||||||| ||||| | || ||||| || ||||| Sbjct 19987 AATATAGGTGTCAATCAAGATGCTATACATTTCGGAATGGACGTTCTCCATAGCAATTTG 19928 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 || || || || |||||||| || | || |||||||| | || | || |||| Sbjct 19927 AAATCCGTAGAAGCATCTAGCTTCAGCAACTTGAACTTCTTTGCTGAAGCGCTCCACTAA 19868 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 || |||||||| || || ||| ||||||||| ||||| | || ||||||| ||| Sbjct 19867 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAAGAAAGAA 19808 Query 13600 tttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659 ||||||||| ||| || |||||| ||||| || | | || ||||| || Sbjct 19807 ACGCTCGTTTTCTTTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 19748 Query 13660 AACGGTCCAAAAAGAAGCAACAGCCT 13685 || ||| |||||||| |||||| Sbjct 19747 CACAACCCAGAAAGAAGCCTCAGCCT 19722 Score = 102 bits (112), Expect = 7e-17 Identities = 219/325 (67%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 || |||||||| ||||| || || ||| | | || ||||| || | | || ||| Sbjct 20476 TCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAACA 20417 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 | || |||| | |||| || | |||||| || | ||| || || | | || || | Sbjct 20416 GACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAATA 20357 Query 13106 ATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACA 13164 || ||||| || |||| | | | || | |||||| | |||||||| ||||| Sbjct 20356 AT-ACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCACA 20298 Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224 || ||||| ||||| | | |||| || || |||||||||| ||| ||| | || Sbjct 20297 ATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGCC 20238 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 |||| || | ||| || ||||||||||| || |||||||| |||||||| || Sbjct 20237 ACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAAAATATACCTTCAACCGC 20178 Query 13285 TGCAAACGCTATCAACCTTTCACCA 13309 ||||| || || | | ||||||| Sbjct 20177 AGCAAAAGCAATGATACGTTCACCA 20153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430850339181084