Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value SEQ19926 141 1e-28 SEQ18161 134 2e-26 SEQ19160 95.1 1e-14 SEQ18560 93.3 5e-14 >SEQ19926 Length=251428 Score = 141 bits (156), Expect = 1e-28 Identities = 340/505 (67%), Gaps = 12/505 (2%) Strand=Plus/Minus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || ||||| | || || | ||| |||||||| || | |||||| || ||||| | ||| Sbjct 64231 TGCGCAATCATATGCGTAAGTAAAGCATAAGAGGCAATATTAAATGGAACACCAAGACCC 64172 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTA--TAGCATAAAATT 7015 ||||| || | ||||| |||||||||||| || || || || | |||| | Sbjct 64171 ATATCAGCACTGCGCTGATATAGTTGACAAGATAACTCATCGT-TAGCTACGA-AAAACT 64114 Query 7016 GACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAG 7075 || || ||| ||||| |||| | | | ||||||| |||||||||| |||| Sbjct 64113 GAGCTAAACAATGGCATGGTGGTAGTGCCATTTTAGGTATATCACATGGATTCCATGCAG 64054 Query 7076 TCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTA--TTTGTAA 7133 ||||| ||| | |||||||||||||||||| || | || ||| | ||| ||| Sbjct 64053 ACATTATAATCCTTCTATCATTTGGATTTGTACGTA---TAGTATCAATAACGTTTTTAA 63997 Query 7134 -TTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAAT 7192 |||||| ||||| | | |||| | ||||| || |||| | || || |||| Sbjct 63996 GTTGATCAATACCTTCATTGCTGTAATCATGATGACGATCCTTATATTCTGCACCGAAAT 63937 Query 7193 GTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTA 7252 | | ||||||||| ||||||| || |||||||| ||||||||||| | | || || | Sbjct 63936 GACGCCATTGAAAGCCATAAACTGGTCCTAAATCGCCTTCTTCACGTTCGTGTAAACCAA 63877 Query 7253 ATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTACA-GAtttttttGAT 7311 | || |||| | || | || ||||||||||||||| | || | ||| Sbjct 63876 GTTTATCTAAAAATGCACGGGAACTATTCCCATCCCAAATATGTATATTCTTATCTTGCA 63817 Query 7312 AAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGC 7371 | | | | || ||| |||||||| | ||||| | | || ||||| | ||||| Sbjct 63816 ATAGCT-GCGCATCTGTTGATCCTTTTATAAACCACAGCAACTCCTCTACAACAGCACGC 63758 Query 7372 CAAAACATTCTTTTTGTAGTGAATA 7396 ||||| | | ||| || || |||| Sbjct 63757 CAAAAAACACGTTTAGTTGTCAATA 63733 >SEQ18161 Length=539859 Score = 134 bits (148), Expect = 2e-26 Identities = 263/388 (68%), Gaps = 18/388 (5%) Strand=Plus/Plus Query 164729 TTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT---------AATA 164779 ||||| | |||||||| || |||||| |||| ||| ||||||| | || | Sbjct 231958 TTATTATATTTGATGAAATTGATGCTATTTGTAAAGCACGTGGTTCTGTTGCTGGCAACA 232017 Query 164780 TTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836 | | |||||| | || || ||||| ||||| |||| || |||||||| ||| Sbjct 232018 GTGGAGTGCATGATACCGTTGTCAATCAATTGCTGGCTAAGATTGATGGTGTGGAACAAC 232077 Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896 | |||||||| || | | ||||||||||| || | |||| | |||||||| ||| | | Sbjct 232078 TCAATAATATACTAGTCATTGGTATGACCAATCGTCGTGATATGATTGATGAGGCTCTTT 232137 Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCC 164956 |||| || ||||| || ||| | |||| || ||| | ||||| | || | ||||| Sbjct 232138 TACGTCCAGGTCGTTTGGAAGTTCAAATGGAGATAAGCTTACCAAATGAACAGGGACGTG 232197 Query 164957 TTCAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATTATCTCCCG 165013 | |||||||| || | ||| | ||| ||| | | | ||| | || | Sbjct 232198 TACAAATTTTGAATATACAT---ACCAAACGTATGCGAGAATTTAATAAGATTGCTGGGG 232254 Query 165014 ATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGG 165073 |||| ||| || |||| ||| | || ||||||| ||||||||||||| |||| | Sbjct 232255 ATGTTGATAGTAAAGAAATTGCTACACTTACCAAAAATTTTAGTGGTGCTGAAATAGAAG 232314 Query 165074 GATTAGTAAGAGCCGCTCAATCAACCGC 165101 | |||||| | || || ||||| || || Sbjct 232315 GTTTAGTACGTGCAGCACAATCTACAGC 232342 Score = 127 bits (140), Expect = 2e-24 Identities = 217/312 (70%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| | |||| |||||||| | ||||| | ||| ||| || | ||| || | Sbjct 231555 ATTGGGACTTTGGCAAAATGGGAATTGGTGGCTTGGATAAAGAGTTCAATGCTATATTTA 231614 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 |||||||||||||||| | |||| ||| | | || ||||||| ||||||| Sbjct 231615 GACGAGCATTTGCTTCACGTGTTTTTCCACCTGAACTTGTTGAACAATTAGGTTGTAAAC 231674 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 | | ||||| || | | |||| ||||||||| |||||||| | ||||| ||| Sbjct 231675 ACGTTAAAGGCATACTGCTCTATGGTCCTCCTGGTACTGGTAAAACGCTTATGGCACGAC 231734 Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| | || | || ||| || || || ||||||||||||||||| || ||| Sbjct 231735 AGATTGGT-AATATGTTGAATGCACGTGAACCA--AAAATTGTTAATGGTCCACAAATAT 231791 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| |||||||| || || ||| | ||| | ||| || ||||||| Sbjct 231792 TGGATAAATATGTTGGTGAGTCTGAGGCAAATATCAGACGACTCTTTGCAGAAGCTGAAG 231851 Query 164690 AAGAACAAAAGA 164701 | ||| |||||| Sbjct 231852 AGGAAGAAAAGA 231863 >SEQ19160 Length=94237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421 |||| || || |||||||||||| | || |||||||| || || ||||| |||| Sbjct 70090 AAATTGGCGACAAGTTTGCTTCTCGTCATGGCCAAAAAGGAACTTGCGGTATTCAATATC 70031 Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481 | || ||||||||||||||||| || || || || || ||| |||| || || || | Sbjct 70030 GGCACGAAGATATGCCTTTTACAAAGGACGGGATTACCCCCGATATTATCATAAATCCTC 69971 Query 19482 ATGCTTTTCCAAGTCGAATGAC 19503 ||||| ||||| ||| ||||| Sbjct 69970 ATGCTATTCCATCTCGTATGAC 69949 >SEQ18560 Length=475018 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| |||| || ||||| ||||||||| || |||||||| || || ||||| Sbjct 393211 ATACCACAAATTGGAGATAAATTTGCTTCTCGCCATGGCCAAAAAGGTACGTGCGGTATA 393152 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 ||||| |||||||||||||| ||||| || || ||| || ||| |||||||| Sbjct 393151 CAATATCGGCAAGAAGATATGCCGTTTACATGCGAAGGCCTAGCACCTGATATTATTATT 393092 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| || ||| | ||| ||| ||||| Sbjct 393091 AACCCTCACGCTATCCCATCTCGTATGAC 393063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595684732327200