Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
SEQ19926 141 1e-28
SEQ18161 134 2e-26
SEQ19160 95.1 1e-14
SEQ18560 93.3 5e-14
>SEQ19926
Length=251428
Score = 141 bits (156), Expect = 1e-28
Identities = 340/505 (67%), Gaps = 12/505 (2%)
Strand=Plus/Minus
Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957
|| ||||| | || || | ||| |||||||| || | |||||| || ||||| | |||
Sbjct 64231 TGCGCAATCATATGCGTAAGTAAAGCATAAGAGGCAATATTAAATGGAACACCAAGACCC 64172
Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTA--TAGCATAAAATT 7015
||||| || | ||||| |||||||||||| || || || || | |||| |
Sbjct 64171 ATATCAGCACTGCGCTGATATAGTTGACAAGATAACTCATCGT-TAGCTACGA-AAAACT 64114
Query 7016 GACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAG 7075
|| || ||| ||||| |||| | | | ||||||| |||||||||| ||||
Sbjct 64113 GAGCTAAACAATGGCATGGTGGTAGTGCCATTTTAGGTATATCACATGGATTCCATGCAG 64054
Query 7076 TCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTA--TTTGTAA 7133
||||| ||| | |||||||||||||||||| || | || ||| | ||| |||
Sbjct 64053 ACATTATAATCCTTCTATCATTTGGATTTGTACGTA---TAGTATCAATAACGTTTTTAA 63997
Query 7134 -TTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAAT 7192
|||||| ||||| | | |||| | ||||| || |||| | || || ||||
Sbjct 63996 GTTGATCAATACCTTCATTGCTGTAATCATGATGACGATCCTTATATTCTGCACCGAAAT 63937
Query 7193 GTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTA 7252
| | ||||||||| ||||||| || |||||||| ||||||||||| | | || || |
Sbjct 63936 GACGCCATTGAAAGCCATAAACTGGTCCTAAATCGCCTTCTTCACGTTCGTGTAAACCAA 63877
Query 7253 ATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTACA-GAtttttttGAT 7311
| || |||| | || | || ||||||||||||||| | || | |||
Sbjct 63876 GTTTATCTAAAAATGCACGGGAACTATTCCCATCCCAAATATGTATATTCTTATCTTGCA 63817
Query 7312 AAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGC 7371
| | | | || ||| |||||||| | ||||| | | || ||||| | |||||
Sbjct 63816 ATAGCT-GCGCATCTGTTGATCCTTTTATAAACCACAGCAACTCCTCTACAACAGCACGC 63758
Query 7372 CAAAACATTCTTTTTGTAGTGAATA 7396
||||| | | ||| || || ||||
Sbjct 63757 CAAAAAACACGTTTAGTTGTCAATA 63733
>SEQ18161
Length=539859
Score = 134 bits (148), Expect = 2e-26
Identities = 263/388 (68%), Gaps = 18/388 (5%)
Strand=Plus/Plus
Query 164729 TTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT---------AATA 164779
||||| | |||||||| || |||||| |||| ||| ||||||| | || |
Sbjct 231958 TTATTATATTTGATGAAATTGATGCTATTTGTAAAGCACGTGGTTCTGTTGCTGGCAACA 232017
Query 164780 TTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836
| | |||||| | || || ||||| ||||| |||| || |||||||| |||
Sbjct 232018 GTGGAGTGCATGATACCGTTGTCAATCAATTGCTGGCTAAGATTGATGGTGTGGAACAAC 232077
Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896
| |||||||| || | | ||||||||||| || | |||| | |||||||| ||| | |
Sbjct 232078 TCAATAATATACTAGTCATTGGTATGACCAATCGTCGTGATATGATTGATGAGGCTCTTT 232137
Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCC 164956
|||| || ||||| || ||| | |||| || ||| | ||||| | || | |||||
Sbjct 232138 TACGTCCAGGTCGTTTGGAAGTTCAAATGGAGATAAGCTTACCAAATGAACAGGGACGTG 232197
Query 164957 TTCAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATTATCTCCCG 165013
| |||||||| || | ||| | ||| ||| | | | ||| | || |
Sbjct 232198 TACAAATTTTGAATATACAT---ACCAAACGTATGCGAGAATTTAATAAGATTGCTGGGG 232254
Query 165014 ATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGG 165073
|||| ||| || |||| ||| | || ||||||| ||||||||||||| |||| |
Sbjct 232255 ATGTTGATAGTAAAGAAATTGCTACACTTACCAAAAATTTTAGTGGTGCTGAAATAGAAG 232314
Query 165074 GATTAGTAAGAGCCGCTCAATCAACCGC 165101
| |||||| | || || ||||| || ||
Sbjct 232315 GTTTAGTACGTGCAGCACAATCTACAGC 232342
Score = 127 bits (140), Expect = 2e-24
Identities = 217/312 (70%), Gaps = 6/312 (2%)
Strand=Plus/Plus
Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452
||||| | |||| |||||||| | ||||| | ||| ||| || | ||| || |
Sbjct 231555 ATTGGGACTTTGGCAAAATGGGAATTGGTGGCTTGGATAAAGAGTTCAATGCTATATTTA 231614
Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512
|||||||||||||||| | |||| ||| | | || ||||||| |||||||
Sbjct 231615 GACGAGCATTTGCTTCACGTGTTTTTCCACCTGAACTTGTTGAACAATTAGGTTGTAAAC 231674
Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572
| | ||||| || | | |||| ||||||||| |||||||| | ||||| |||
Sbjct 231675 ACGTTAAAGGCATACTGCTCTATGGTCCTCCTGGTACTGGTAAAACGCTTATGGCACGAC 231734
Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629
|||| | || | || ||| || || || ||||||||||||||||| || |||
Sbjct 231735 AGATTGGT-AATATGTTGAATGCACGTGAACCA--AAAATTGTTAATGGTCCACAAATAT 231791
Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689
|| | |||||||| |||||||| || || ||| | ||| | ||| || |||||||
Sbjct 231792 TGGATAAATATGTTGGTGAGTCTGAGGCAAATATCAGACGACTCTTTGCAGAAGCTGAAG 231851
Query 164690 AAGAACAAAAGA 164701
| ||| ||||||
Sbjct 231852 AGGAAGAAAAGA 231863
>SEQ19160
Length=94237
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421
|||| || || |||||||||||| | || |||||||| || || ||||| ||||
Sbjct 70090 AAATTGGCGACAAGTTTGCTTCTCGTCATGGCCAAAAAGGAACTTGCGGTATTCAATATC 70031
Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481
| || ||||||||||||||||| || || || || || ||| |||| || || || |
Sbjct 70030 GGCACGAAGATATGCCTTTTACAAAGGACGGGATTACCCCCGATATTATCATAAATCCTC 69971
Query 19482 ATGCTTTTCCAAGTCGAATGAC 19503
||||| ||||| ||| |||||
Sbjct 69970 ATGCTATTCCATCTCGTATGAC 69949
>SEQ18560
Length=475018
Score = 93.3 bits (102), Expect = 5e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414
||||| |||| || ||||| ||||||||| || |||||||| || || |||||
Sbjct 393211 ATACCACAAATTGGAGATAAATTTGCTTCTCGCCATGGCCAAAAAGGTACGTGCGGTATA 393152
Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474
||||| |||||||||||||| ||||| || || ||| || ||| ||||||||
Sbjct 393151 CAATATCGGCAAGAAGATATGCCGTTTACATGCGAAGGCCTAGCACCTGATATTATTATT 393092
Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503
||||| || ||| | ||| ||| |||||
Sbjct 393091 AACCCTCACGCTATCCCATCTCGTATGAC 393063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595684732327200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |