Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value SEQ23690 140 2e-28 seq1229 140 2e-28 >SEQ23690 Length=67964 Score = 140 bits (154), Expect = 2e-28 Identities = 201/278 (72%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 3871 AAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATAT 3930 ||| ||||| |||||| | ||||| || ||||| || || ||||| |||||||||||||| Sbjct 36350 AAATGGTGTCCATTTTGTTATGGCGGATGGTGGTTTTTCAGTTGAAGGTCAAGAAAATAT 36291 Query 3931 GCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCAT 3990 || ||||| | || ||| | | ||| | ||||| ||||||| || |||| || | Sbjct 36290 TCAGGAAATTCTTTCAAAACAACTTTATCTCTGTCAGTGTTTAACAGCGTTGAAAATTCT 36231 Query 3991 ACG---AATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGC 4047 | || ||| || |||||| ||||||||||||| |||| ||||| || |||| Sbjct 36230 TTGCGAAAATGGAAGT-TTTGTGT--GCAAATTTTTCGATTTATTCACACCATTCAGTGT 36174 Query 4048 TGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTC 4107 ||| || | ||||| ||||||| | |||| || ||| | ||| | |||||| | | Sbjct 36173 TGGGCTAATATATTTAATGTATAAGTGTTTTGATGTTATATCAATTATAAAACCA-AATA 36115 Query 4108 ATCGC-GACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 | || |||| || ||||| ||| | ||||| || ||| Sbjct 36114 GTAGCAGACCAGCTAATTCCGAACGTTATTTAGTATGT 36077 >seq1229 Length=12593 Score = 140 bits (154), Expect = 2e-28 Identities = 201/278 (72%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 3871 AAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATAT 3930 ||| ||||| |||||| | ||||| || ||||| || || ||||| |||||||||||||| Sbjct 9592 AAATGGTGTCCATTTTGTTATGGCGGATGGTGGTTTTTCAGTTGAAGGTCAAGAAAATAT 9651 Query 3931 GCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCAT 3990 || ||||| | || ||| | | ||| | ||||| ||||||| || |||| || | Sbjct 9652 TCAGGAAATTCTTTCAAAACAACTTTATCTCTGTCAGTGTTTAACAGCGTTGAAAATTCT 9711 Query 3991 ACG---AATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGC 4047 | || ||| || |||||| ||||||||||||| |||| ||||| || |||| Sbjct 9712 TTGCGAAAATGGAAGT-TTTGTGT--GCAAATTTTTCGATTTATTCACACCATTCAGTGT 9768 Query 4048 TGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTC 4107 ||| || | ||||| ||||||| | |||| || ||| | ||| | |||||| | | Sbjct 9769 TGGGCTAATATATTTAATGTATAAGTGTTTTGATGTTATATCAATTATAAAACCA-AATA 9827 Query 4108 ATCGC-GACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 | || |||| || ||||| ||| | ||||| || ||| Sbjct 9828 GTAGCAGACCAGCTAATTCCGAACGTTATTTAGTATGT 9865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276468858964426