Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4482 116 2e-21 SEQ18879 114 7e-21 SEQ24132 113 2e-20 seq4476 113 2e-20 seq4126 113 2e-20 seq2405 113 2e-20 SEQ24079 111 8e-20 SEQ19056 111 8e-20 seq3358 111 8e-20 SEQ14572 93.3 2e-14 >seq4482 Length=129479 Score = 116 bits (128), Expect = 2e-21 Identities = 90/106 (85%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACC 11484 |||| ||||||||| |||||| | | |||||||||| |||||||||| || || Sbjct 108975 AAAT-TAGAATTAAAAAAAAAAAAGAACAGTTGGCCCATGGGGGGATCGAACCCGCGGCC 108917 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 108916 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 108871 >SEQ18879 Length=315206 Score = 114 bits (126), Expect = 7e-21 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 11431 ATATAGAATT-AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| |||| || ||||||| | | ||||||||| |||||||||| || |||||| Sbjct 42333 ATATAAAATTTAAAAAAAAATAATACCTGGCCCATGGGGGGATCGAACCCGCGGCCTTCG 42392 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 42393 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 42433 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| |||||||||| || ||||||||||||||||||||| Sbjct 41717 AAAAAAACAT-TTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 41659 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 41658 GCTCTAACCAACTGAGCTAATGGGCC 41633 >SEQ24132 Length=636412 Score = 113 bits (124), Expect = 2e-20 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || ||| |||||| | | |||||||||| |||||||||| ||||||||||||||| Sbjct 297067 AAATAAAAAAAAAGTTGTAGTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTAT 297008 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 297007 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 296973 >seq4476 Length=9124 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| || | ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 2045 TAAAAAAAGAATTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 2104 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 2105 ACGCTCTAACCAACTGAGCTAATGGGCC 2132 >seq4126 Length=17104 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| || | ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 10281 TAAAAAAAGAATTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 10222 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 10221 ACGCTCTAACCAACTGAGCTAATGGGCC 10194 >seq2405 Length=33632 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| || | ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 19469 TAAAAAAAGAATTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 19528 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 19529 ACGCTCTAACCAACTGAGCTAATGGGCC 19556 >SEQ24079 Length=103619 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| || |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 49360 AAAAAAAATTC---TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 49304 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 49303 GACGCTCTAACCAACTGAGCTAATGGGCC 49275 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| |||| || |||||||||| |||||||||| || ||||||||||||||||||| Sbjct 51924 ATATAAAA--AAGTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACG 51867 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 51866 ACGCTCTAACCAACTGAGCTAATGGGCC 51839 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| |||||||||| || |||||||||||||||||||||||||| || Sbjct 52679 AAGTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAAC 52620 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 52619 CAACTGAGCTAATGGGCC 52602 >SEQ19056 Length=60028 Score = 111 bits (122), Expect = 8e-20 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||||||| || | ||||||||| |||||||||| ||||||||||||||||| Sbjct 48886 TAATAAAAAA--AACTCTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 48829 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 48828 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 48796 >seq3358 Length=11281 Score = 111 bits (122), Expect = 8e-20 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||||||| || | ||||||||| |||||||||| ||||||||||||||||| Sbjct 8282 TAATAAAAAA--AACTCTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 8225 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 8224 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 8192 >SEQ14572 Length=8235 Score = 93.3 bits (102), Expect = 2e-14 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 11472 CGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 8235 CGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 8178 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261411074356792