Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq4482 116 2e-21
SEQ18879 114 7e-21
SEQ24132 113 2e-20
seq4476 113 2e-20
seq4126 113 2e-20
seq2405 113 2e-20
SEQ24079 111 8e-20
SEQ19056 111 8e-20
seq3358 111 8e-20
SEQ14572 93.3 2e-14
>seq4482
Length=129479
Score = 116 bits (128), Expect = 2e-21
Identities = 90/106 (85%), Gaps = 5/106 (5%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACC 11484
|||| ||||||||| |||||| | | |||||||||| |||||||||| || ||
Sbjct 108975 AAAT-TAGAATTAAAAAAAAAAAAGAACAGTTGGCCCATGGGGGGATCGAACCCGCGGCC 108917
Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 108916 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 108871
>SEQ18879
Length=315206
Score = 114 bits (126), Expect = 7e-21
Identities = 87/101 (86%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 11431 ATATAGAATT-AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||||| |||| || ||||||| | | ||||||||| |||||||||| || ||||||
Sbjct 42333 ATATAAAATTTAAAAAAAAATAATACCTGGCCCATGGGGGGATCGAACCCGCGGCCTTCG 42392
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 42393 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 42433
Score = 109 bits (120), Expect = 3e-19
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || |||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 41717 AAAAAAACAT-TTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGAC 41659
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 41658 GCTCTAACCAACTGAGCTAATGGGCC 41633
>SEQ24132
Length=636412
Score = 113 bits (124), Expect = 2e-20
Identities = 82/95 (86%), Gaps = 2/95 (2%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|| ||| |||||| | | |||||||||| |||||||||| |||||||||||||||
Sbjct 297067 AAATAAAAAAAAAGTTGTAGTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTAT 297008
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| ||||||||||||||||||||
Sbjct 297007 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 296973
>seq4476
Length=9124
Score = 113 bits (124), Expect = 2e-20
Identities = 78/88 (89%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
||||||| || | ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 2045 TAAAAAAAGAATTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 2104
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 2105 ACGCTCTAACCAACTGAGCTAATGGGCC 2132
>seq4126
Length=17104
Score = 113 bits (124), Expect = 2e-20
Identities = 78/88 (89%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
||||||| || | ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 10281 TAAAAAAAGAATTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 10222
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 10221 ACGCTCTAACCAACTGAGCTAATGGGCC 10194
>seq2405
Length=33632
Score = 113 bits (124), Expect = 2e-20
Identities = 78/88 (89%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
||||||| || | ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 19469 TAAAAAAAGAATTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 19528
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 19529 ACGCTCTAACCAACTGAGCTAATGGGCC 19556
>SEQ24079
Length=103619
Score = 111 bits (122), Expect = 8e-20
Identities = 78/89 (88%), Gaps = 3/89 (3%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||| || |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 49360 AAAAAAAATTC---TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 49304
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 49303 GACGCTCTAACCAACTGAGCTAATGGGCC 49275
Score = 109 bits (120), Expect = 3e-19
Identities = 77/88 (88%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
||| |||| || |||||||||| |||||||||| || |||||||||||||||||||
Sbjct 51924 ATATAAAA--AAGTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACG 51867
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 51866 ACGCTCTAACCAACTGAGCTAATGGGCC 51839
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| |||||||||| |||||||||| || |||||||||||||||||||||||||| ||
Sbjct 52679 AAGTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAAC 52620
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 52619 CAACTGAGCTAATGGGCC 52602
>SEQ19056
Length=60028
Score = 111 bits (122), Expect = 8e-20
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 11440 TAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||||||| || | ||||||||| |||||||||| |||||||||||||||||
Sbjct 48886 TAATAAAAAA--AACTCTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 48829
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 48828 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 48796
>seq3358
Length=11281
Score = 111 bits (122), Expect = 8e-20
Identities = 81/93 (87%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 11440 TAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||||||| || | ||||||||| |||||||||| |||||||||||||||||
Sbjct 8282 TAATAAAAAA--AACTCTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 8225
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 8224 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 8192
>SEQ14572
Length=8235
Score = 93.3 bits (102), Expect = 2e-14
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 11472 CGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 8235 CGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 8178
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261411074356792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |