Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
SEQ23413 122 9e-23
SEQ14824 122 9e-23
SEQ11801 118 1e-21
>SEQ23413
Length=15718
Score = 122 bits (134), Expect = 9e-23
Identities = 227/332 (68%), Gaps = 16/332 (5%)
Strand=Plus/Plus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
||| || |||||||| ||||||||| |||| | || ||||||||||| | | || ||
Sbjct 624 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 683
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
|| | |||| || | || |||||| || || || || || || | ||
Sbjct 684 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 743
Query 21430 TATCC------TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483
|| | |||||| || | | || || |||| |||||| | ||||||||
Sbjct 744 AATACGTTGCTTAGATGGAC------GTTGCACCAAATGTTGAAACATAAGGCATGCAAA 797
Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543
|||||||| || || ||||| | | |||||||||||||||||||||||||| ||||
Sbjct 798 GTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAA 857
Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCC 21601
| || | | |||||||| || || | ||||| | | |||||| || || ||
Sbjct 858 GATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCT 915
Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACC 21633
||||| |||||||| |||| | ||||||||
Sbjct 916 TCAACAGCAGCAAAAGCAATGATACGTTCACC 947
Score = 100 bits (110), Expect = 3e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||| ||||| | |||||| || ||||| ||||||||||| || ||||| ||
Sbjct 1137 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 1196
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|| | | |||||| || || || | | || || || || || || ||||||
Sbjct 1197 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 1256
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946
|| ||||| || || || |||| || |||||||| || ||||| || | |||||
Sbjct 1257 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATAACGCTCGTTGTCATTCAATTTC 1316
Query 21947 TTCCAATC 21954
| ||||||
Sbjct 1317 TCCCAATC 1324
>SEQ14824
Length=19491
Score = 122 bits (134), Expect = 9e-23
Identities = 227/332 (68%), Gaps = 16/332 (5%)
Strand=Plus/Plus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
||| || |||||||| ||||||||| |||| | || ||||||||||| | | || ||
Sbjct 4960 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 5019
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
|| | |||| || | || |||||| || || || || || || | ||
Sbjct 5020 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 5079
Query 21430 TATCC------TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483
|| | |||||| || | | || || |||| |||||| | ||||||||
Sbjct 5080 AATACGTTGCTTAGATGGAC------GTTGCACCAAATGTTGAAACATAAGGCATGCAAA 5133
Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543
|||||||| || || ||||| | | |||||||||||||||||||||||||| ||||
Sbjct 5134 GTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAA 5193
Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCC 21601
| || | | |||||||| || || | ||||| | | |||||| || || ||
Sbjct 5194 GATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCT 5251
Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACC 21633
||||| |||||||| |||| | ||||||||
Sbjct 5252 TCAACAGCAGCAAAAGCAATGATACGTTCACC 5283
Score = 122 bits (134), Expect = 9e-23
Identities = 227/332 (68%), Gaps = 16/332 (5%)
Strand=Plus/Plus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
||| || |||||||| ||||||||| |||| | || ||||||||||| | | || ||
Sbjct 11759 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 11818
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
|| | |||| || | || |||||| || || || || || || | ||
Sbjct 11819 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 11878
Query 21430 TATCC------TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483
|| | |||||| || | | || || |||| |||||| | ||||||||
Sbjct 11879 AATACGTTGCTTAGATGGAC------GTTGCACCAAATGTTGAAACATAAGGCATGCAAA 11932
Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543
|||||||| || || ||||| | | |||||||||||||||||||||||||| ||||
Sbjct 11933 GTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAA 11992
Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCC 21601
| || | | |||||||| || || | ||||| | | |||||| || || ||
Sbjct 11993 GATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCT 12050
Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACC 21633
||||| |||||||| |||| | ||||||||
Sbjct 12051 TCAACAGCAGCAAAAGCAATGATACGTTCACC 12082
Score = 100 bits (110), Expect = 3e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||| ||||| | |||||| || ||||| ||||||||||| || ||||| ||
Sbjct 5473 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 5532
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|| | | |||||| || || || | | || || || || || || ||||||
Sbjct 5533 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 5592
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946
|| ||||| || || || |||| || ||||| || || ||||| || |||||||
Sbjct 5593 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTC 5652
Query 21947 TTCCAATC 21954
| ||||||
Sbjct 5653 TCCCAATC 5660
Score = 100 bits (110), Expect = 3e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||| ||||| | |||||| || ||||| ||||||||||| || ||||| ||
Sbjct 12272 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 12331
Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886
|| | | |||||| || || || | | || || || || || || ||||||
Sbjct 12332 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 12391
Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946
|| ||||| || || || |||| || ||||| || || ||||| || |||||||
Sbjct 12392 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTC 12451
Query 21947 TTCCAATC 21954
| ||||||
Sbjct 12452 TCCCAATC 12459
>SEQ11801
Length=23874
Score = 118 bits (130), Expect = 1e-21
Identities = 225/327 (69%), Gaps = 6/327 (2%)
Strand=Plus/Minus
Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369
||| || ||||||||||||||||| |||| | || ||||||||||| | | || ||
Sbjct 20477 ATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAAC 20418
Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429
|| | |||| || | || |||||| || || || || || || | ||
Sbjct 20417 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 20358
Query 21430 TATCC-TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCAC 21488
|| | | | | || || | | || || |||| |||||| | |||||||| ||||
Sbjct 20357 AATACGTTGCT-TAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCAC 20299
Query 21489 AATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATC 21548
|||| || || ||||| | | |||||||||||||||||||||||||| ||| | |
Sbjct 20298 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGC 20239
Query 21549 CTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAAC 21606
| | | |||||||| || || | ||||| | | |||||| || || || |||||
Sbjct 20238 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCTTCAAC 20181
Query 21607 GGCAGCAAATGCAACTAATCGTTCACC 21633
|||||||| |||| | ||||||||
Sbjct 20180 CGCAGCAAAAGCAATGATACGTTCACC 20154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531733636876080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |