Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value SEQ23413 122 9e-23 SEQ14824 122 9e-23 SEQ11801 118 1e-21 >SEQ23413 Length=15718 Score = 122 bits (134), Expect = 9e-23 Identities = 227/332 (68%), Gaps = 16/332 (5%) Strand=Plus/Plus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| ||||||||| |||| | || ||||||||||| | | || || Sbjct 624 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 683 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | |||| || | || |||||| || || || || || || | || Sbjct 684 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 743 Query 21430 TATCC------TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 || | |||||| || | | || || |||| |||||| | |||||||| Sbjct 744 AATACGTTGCTTAGATGGAC------GTTGCACCAAATGTTGAAACATAAGGCATGCAAA 797 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 |||||||| || || ||||| | | |||||||||||||||||||||||||| |||| Sbjct 798 GTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAA 857 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCC 21601 | || | | |||||||| || || | ||||| | | |||||| || || || Sbjct 858 GATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCT 915 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACC 21633 ||||| |||||||| |||| | |||||||| Sbjct 916 TCAACAGCAGCAAAAGCAATGATACGTTCACC 947 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||| ||||| | |||||| || ||||| ||||||||||| || ||||| || Sbjct 1137 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 1196 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || | | |||||| || || || | | || || || || || || |||||| Sbjct 1197 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 1256 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 || ||||| || || || |||| || |||||||| || ||||| || | ||||| Sbjct 1257 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATAACGCTCGTTGTCATTCAATTTC 1316 Query 21947 TTCCAATC 21954 | |||||| Sbjct 1317 TCCCAATC 1324 >SEQ14824 Length=19491 Score = 122 bits (134), Expect = 9e-23 Identities = 227/332 (68%), Gaps = 16/332 (5%) Strand=Plus/Plus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| ||||||||| |||| | || ||||||||||| | | || || Sbjct 4960 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 5019 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | |||| || | || |||||| || || || || || || | || Sbjct 5020 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 5079 Query 21430 TATCC------TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 || | |||||| || | | || || |||| |||||| | |||||||| Sbjct 5080 AATACGTTGCTTAGATGGAC------GTTGCACCAAATGTTGAAACATAAGGCATGCAAA 5133 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 |||||||| || || ||||| | | |||||||||||||||||||||||||| |||| Sbjct 5134 GTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAA 5193 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCC 21601 | || | | |||||||| || || | ||||| | | |||||| || || || Sbjct 5194 GATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCT 5251 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACC 21633 ||||| |||||||| |||| | |||||||| Sbjct 5252 TCAACAGCAGCAAAAGCAATGATACGTTCACC 5283 Score = 122 bits (134), Expect = 9e-23 Identities = 227/332 (68%), Gaps = 16/332 (5%) Strand=Plus/Plus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| ||||||||| |||| | || ||||||||||| | | || || Sbjct 11759 ATCAGCGACAAATTCGATATATTGAGACATGAGTTTGCAATTCATACCAAGGAGATTAAC 11818 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | |||| || | || |||||| || || || || || || | || Sbjct 11819 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 11878 Query 21430 TATCC------TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 || | |||||| || | | || || |||| |||||| | |||||||| Sbjct 11879 AATACGTTGCTTAGATGGAC------GTTGCACCAAATGTTGAAACATAAGGCATGCAAA 11932 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 |||||||| || || ||||| | | |||||||||||||||||||||||||| |||| Sbjct 11933 GTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCAGGCAA 11992 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCC 21601 | || | | |||||||| || || | ||||| | | |||||| || || || Sbjct 11993 GATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCT 12050 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACC 21633 ||||| |||||||| |||| | |||||||| Sbjct 12051 TCAACAGCAGCAAAAGCAATGATACGTTCACC 12082 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||| ||||| | |||||| || ||||| ||||||||||| || ||||| || Sbjct 5473 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 5532 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || | | |||||| || || || | | || || || || || || |||||| Sbjct 5533 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 5592 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 || ||||| || || || |||| || ||||| || || ||||| || ||||||| Sbjct 5593 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTC 5652 Query 21947 TTCCAATC 21954 | |||||| Sbjct 5653 TCCCAATC 5660 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||| ||||| | |||||| || ||||| ||||||||||| || ||||| || Sbjct 12272 CTATACATTTCTGAATGCACATTTTCAATTGCTATTTGAAATCCGTAGAAGCATCTAGCT 12331 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || | | |||||| || || || | | || || || || || || |||||| Sbjct 12332 TCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAAATTCTCGTTAACAATACCATCA 12391 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 || ||||| || || || |||| || ||||| || || ||||| || ||||||| Sbjct 12392 GAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTAACGCTCGTTGTCATTTAATTTC 12451 Query 21947 TTCCAATC 21954 | |||||| Sbjct 12452 TCCCAATC 12459 >SEQ11801 Length=23874 Score = 118 bits (130), Expect = 1e-21 Identities = 225/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || ||||||||||||||||| |||| | || ||||||||||| | | || || Sbjct 20477 ATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATTCATACCAAGGAGATTAAC 20418 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | |||| || | || |||||| || || || || || || | || Sbjct 20417 AGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGCATCTGTTATAATTTCAAT 20358 Query 21430 TATCC-TAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCAC 21488 || | | | | || || | | || || |||| |||||| | |||||||| |||| Sbjct 20357 AATACGTTGCT-TAGATGGCCGTTGCACCAAGTGTTGAAACATAAGGCATGCAAAGTCAC 20299 Query 21489 AATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATC 21548 |||| || || ||||| | | |||||||||||||||||||||||||| ||| | | Sbjct 20298 AATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGTTAAACCATGCAAGATGC 20239 Query 21549 CTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAAC 21606 | | | |||||||| || || | ||||| | | |||||| || || || ||||| Sbjct 20238 CACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAAA--AATATACCTTCAAC 20181 Query 21607 GGCAGCAAATGCAACTAATCGTTCACC 21633 |||||||| |||| | |||||||| Sbjct 20180 CGCAGCAAAAGCAATGATACGTTCACC 20154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531733636876080