Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value SEQ24359 172 1e-37 SEQ19298 168 2e-36 SEQ19926 158 3e-33 SEQ18813 86.0 2e-11 >SEQ24359 Length=906208 Score = 172 bits (190), Expect = 1e-37 Identities = 597/921 (65%), Gaps = 8/921 (1%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTGA 363449 || |||| ||| ||| | || ||| || || |||| | | ||||| | |||| || Sbjct 359805 TTTGGATTTAAAACGTTAGAACGATCGTATCT-TCTCAAAATAAATGGGAAAGTTGTGGA 359747 Query 363450 ACGCCCGCAGCATATGTTAATGCG-TGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508 | | || || || |||| ||| | || | | |||||||| ||| | ||| | || | Sbjct 359746 AAGACCCCAACACCTGTTGATGAGATGCT-CGATTGGTATACATGGAAATGATATAGAAG 359688 Query 363509 CCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAACA 363567 || |||||||| ||||| ||||| | || ||| || ||||| || ||||||| Sbjct 359687 GAGCAATTGAAACTTATAATCTTCTCTCCGAGCG-GTACTTTACGCATGCATCGCCAACT 359629 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| |||| ||| | | ||||| | || || || || || || | ||| Sbjct 359628 CTGTTTTCCGCTGCCACTAGAAGACCACAACTTTCATCGTGTTTCCTGCTTACTATGGTT 359569 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 || || ||||| |||||||| || | || || | | |||||| || || || Sbjct 359568 GATGACTCCATTGAGGGTATTTTCAAGTCAGTTGAACAATGTGCTAAGATATCGAAATCA 359509 Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGC 363747 || || || ||||| || || || | |||| || | || || || ||| Sbjct 359508 GCTGGAGGCATTGGATTAAATATTCATTGTATTCGAGCTAAAGGCACTTTTATAACCGGA 359449 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 ||| || || ||||| | || || ||| | || ||| ||||| || || Sbjct 359448 ACAAATGGTGTTTCAAATGGATTAGTACCAATGTTAAAAGTTTTTAACAATGTGGCAAGA 359389 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 || || ||||| || || || || | || || ||||| || || || || ||| Sbjct 359388 TATGTTGACCAAGGCGGTGGTAAAAGGCCTGGAGCTTTTGCCATTTACCTAGAACCTTGG 359329 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 ||| ||||||| ||||| ||| | || || |||||||| || ||||| ||| || Sbjct 359328 CATCCCGATATATTTGACTTTTTAGATCTTAAAAAAAACACTGGTAAAGAAGAAAACCGA 359269 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCA 363987 || || ||| | || |||||||| ||| || |||| |||||||| || || || || Sbjct 359268 GCTCGAGATTTATTTTATGCACTCTGGATTCCTGATTTATTTATGAAACGTGTTGAAGCT 359209 Query 363988 GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC-GATGTATGGGG 364046 | | |||||||| || | || || | ||||||| || ||| | || || ||||| Sbjct 359208 AATGAAAATTGGTCTCTAATGTGTCCTAATAAATGTCCCGG-CTTGCATGAAGTTTGGGG 359150 Query 364047 TGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAAT 364106 | | || | | | |||| ||| |||||| || || || || ||| ||||| Sbjct 359149 TAAAGAGTTCGAAGACTTATATACAAAATATGAAAATGAAGGTAAAGCAAATAAAACAAT 359090 Query 364107 TCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTA 364166 || || || ||||||||||| |||| | || ||||| || || || || || Sbjct 359089 CAAAGCCCAAGCACTTTGGTTTGCCATAGTGGAAGCACAAATTGAAACTGGGACTCCATA 359030 Query 364167 TATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCA 364226 |||| | || ||||| || ||||| ||||| || || || | | || || ||| | Sbjct 359029 TATGCTATATAAAGACTCTTGCAATCGCAAAAGTAATCAACAAAATTTGGGAACTATTAA 358970 Query 364227 GCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATG 364286 | || || |||| || || || |||||||| | ||||| || || |||||| || Sbjct 358969 GTGCAGTAATTTATGCACAGAAATAATTGAATATTCTGCTCCAGATGAAGTTGCCGTTTG 358910 Query 364287 TAACCTTGCGTCGATCGCGCT 364307 ||| | ||||| || || || Sbjct 358909 CAACTTGGCGTCTATAGCACT 358889 >SEQ19298 Length=518036 Score = 168 bits (186), Expect = 2e-36 Identities = 601/925 (65%), Gaps = 16/925 (2%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTGTTGA 363449 || |||| ||| ||| | || ||| || || |||| || ||||| | |||| || Sbjct 236304 TTTGGATTTAAAACGTTAGAACGATCGTATCT-TCTCAAGATAAATGGGAAAGTTGTGGA 236246 Query 363450 ACGCCCGCAGCATATGTTAATGCG-TGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508 | | || ||||| |||| ||| | || | | |||||||| ||| | ||| | || | Sbjct 236245 AAGACCCCAGCACCTGTTGATGAGATGCT-CAATTGGTATACATGGGAATGATATAGAAG 236187 Query 363509 CCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCAACA 363567 || |||||||| ||||| ||||| || || ||| || ||||| ||| ||||||| Sbjct 236186 GAGCAATTGAAACTTATAATCTTCTCTCTGAACG-GTACTTTACGCATGCCTCGCCAACT 236128 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| | |||| ||| | | ||||| | || || || || || || | ||| Sbjct 236127 CTGTTCTCCGCTGCCACTAGAAGGCCACAACTTTCATCGTGTTTCCTGCTTACTATGGTT 236068 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 | || || || || || || || | || || | | |||||| | || || || Sbjct 236067 GCTGACTCAATTGAAGGAATTTTCAAGTCAGTTGAACAATGTGCTATGATATCAAAATCA 236008 Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACA--GAACAGTTACATTCG 363743 || || || ||||| || || || || || | || | | || ||| || | Sbjct 236007 GCCGGTGGCATTGGATTAA--ATGTTCATTGCATTAGAGCTAAAGGCACGTTTATATCAG 235950 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 || | || | | || ||||| | || || ||| | | || ||| | ||| || Sbjct 235949 GAACAAATGGTGTT--TCAAATGGATTAGTGCCAATGTTAAGGGTATTTAATAATGTGGC 235892 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 || || || ||||| ||||| || || | || || ||||| || ||||| || || Sbjct 235891 AAGATATGTTGACCAAGGTGGTGGTAAAAGACCTGGAGCTTTTGCAATTTATCTTGAACC 235832 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 | ||| | ||||| ||||| ||| | || || ||| || || || || || ||| Sbjct 235831 TTGGCATTCTGATATATTTGAATTTATAGATCTTAAGAAGAATACCGGTAAGGAAGAAAA 235772 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || || || ||| | || |||||||||||| || |||| |||||||| || || || Sbjct 235771 CCGCGCTCGAGATTTATTTTATGCACTTTGGATTCCTGATTTATTTATGAAACGTGTTGA 235712 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC-CGATGTAT 364042 || | | ||||||||||| | |||||| || ||||||| || ||| | || || | Sbjct 235711 AGCTAATGAAAATTGGTCACTTATGTGCCCAAACAAATGTCCTGG-CTTGCATGAGGTTT 235653 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 ||||||| || | || | | |||| ||| |||||| ||| || | || || Sbjct 235652 GGGGTGAAGAATTTGAAGATTTATATACAAAATATGAAAAGGAAGGTAGAGCAAATAGAG 235593 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | || ||||| || |||||||| || || || | || |||| || ||||| | Sbjct 235592 TAGTTAAAGCACAAGCTCTTTGGTTTGCTATAATTGAAGCACAAGTTGAAACTGGAACTC 235533 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 | |||||| | || || ||||| ||||| ||||| || || || | | || |||| Sbjct 235532 CTTATATGCTATATAAGGATTCATGCAATCGCAAAAGTAATCAACAAAATTTAGGAACAA 235473 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 | || || || |||| || || || |||| ||| | || || || || | ||| | Sbjct 235472 TCAAGTGCAGTAATTTATGCACAGAAATCGTTGAGTACTCTGCGCCAGATGAAATTGCAG 235413 Query 364283 TATGTAACCTTGCGTCGATCGCGCT 364307 | || ||| | || || || || || Sbjct 235412 TTTGCAACTTGGCTTCTATAGCACT 235388 >SEQ19926 Length=251428 Score = 158 bits (174), Expect = 3e-33 Identities = 362/535 (68%), Gaps = 24/535 (4%) Strand=Plus/Plus Query 111355 TTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAA 111414 |||| || || | ||||||||||| ||| ||| |||| | | ||||| | Sbjct 63766 TTGTAGAGGAGTTGCTGTGGTTTATAAAAGGATCAACAGATGCGCAGCTA-TTGCAAGAT 63824 Query 111415 AA-AATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTT 111473 || ||| || | ||||||||||| ||| | || |||| ||| ||||| | ||||| | Sbjct 63825 AAGAATATACATATTTGGGATGGGAATAGTTCCCGTGCATTTTTAGATAAACTTGGTTTA 63884 Query 111474 GTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGT 111533 ||| |||||||| ||| | ||||||||||| || ||||||||||| || || ||| Sbjct 63885 CACGAACGTGAAGAAGGCGATTTAGGACCAGTTTATGGCTTTCAATGGCGTCATTTCGGT 63944 Query 111534 GCAGACTACAAAACCATGCACGACTCAT-ATGATTCACAG-------GGAACTGATCAAT 111585 ||||| || | | | || |||| |||||| |||| || | ||||||| Sbjct 63945 GCAGAATATA-----AGGATCG--TCATCATGATT-ACAGCAATGAAGGTATTGATCAAC 63996 Query 111586 TACAGAATGTCATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGT 111644 | | || || |||||| | || | || || |||| | | | | ||||| ||| | Sbjct 63997 TTAAAAACGTTATTGAT-ACTATACGTACAAATCCAAATGATAGAAGGATTATAATGTCT 64055 Query 111645 GCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAG 111704 |||||||| ||| || | ||||||||||| |||||||| ||| | | ||| Sbjct 64056 GCATGGAATCCATGTGATATACCTAAAATGGCACTACCACCATGCCATTGTTTAGCTCAG 64115 Query 111705 TTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGT 111764 |||| ||| ||| | | || || ||| | |||||||| ||||||||| ||| Sbjct 64116 TTTTTCGTAGCTAACGATGAGTTATCTTGTCAACTATATCAGCGCAGTGCTGATATGGGT 64175 Query 111765 CTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTA--ATCGCTCATT 111822 ||||||||||| ||||||||||| ||| || ||||||| || || || || ||| Sbjct 64176 CTTGGTGTTCCATTTAATATTGCCTCTTATGCTTTACTTAC--GCATATGATTGCGCATG 64233 Query 111823 TTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 |||| | || || ||| || | ||| ||| || ||| ||||||| || Sbjct 64234 TTACGGGATTAAAGCCTGGTTGTTTTGTACACACTATGGGTGATACGCATGTATA 64288 >SEQ18813 Length=73329 Score = 86.0 bits (94), Expect = 2e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 145531 TTAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGT 145590 |||||||||| || | || || ||||||||||| |||| |||||| | |||| | | Sbjct 45083 TTAAATCTTCTTCCGTGAAACCTGTTCCGATCTTACATATACTTTGATATTCTTCATTAT 45024 Query 145591 CTGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGG 145650 || ||||| || || || | | ||||||| ||| || | ||| || || Sbjct 45023 CTTTGTCATAACAAGCCAGTAGAAAACCGCCATATATACCCGTTCTTTTGCCTTTGCCCT 44964 Query 145651 TATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTT 145710 || | || |||| ||| | ||| | |||||| ||| | ||||||||||||| Sbjct 44963 TAAAGCCACCAATGACTACTAAATCTAAGGAATCACCAGCTCCATCTAGATAATCCTTTT 44904 Query 145711 TAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATA 145750 | | ||| ||||||||| | |||||||| | | |||||| Sbjct 44903 TCAATTTAAGCCAATTGCGTGAACGTTTAGCTATTTCATA 44864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302933748261044