Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value SEQ18352 95.1 1e-14 >SEQ18352 Length=541547 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| | || ||||||||||| || | ||| || || Sbjct 399694 ATGCAGATATTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCTTCG 399753 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | |||||| |||||| || |||||||| | || ||||| Sbjct 399754 GACACAATAGAAAATGTAAAATCTAAAATTCAAGACAAAGAAGGTATACCGCCAGATCAA 399813 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || || | ||| ||||||||| | ||||||| || | |||| || ||| Sbjct 399814 CAACGTCTAATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACTCTCTCCGACTACAAC 399873 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 ||||| || || |||||| | ||| ||||||| Sbjct 399874 ATTCAGAAGGAATCTACTTTGCATTTGGTGTT 399905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || | || || ||||||||||| | || ||| ||| | Sbjct 390753 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATTACTTTAGAGGTCGAG-CCATC 390811 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || || ||||| |||||||||||| | ||| ||||| Sbjct 390812 TGACACCATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGCATTCCCCCAGATCA 390871 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || | | || | ||| ||||||||| | ||||||| || || |||| || || Sbjct 390872 ACAGCGTTTAATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACTTTGTCCGACTACAA 390931 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| ||||| || |||||| ||||| |||| ||| | || || || || Sbjct 390932 CATCCAAAAGGAATCTACTTTACATTTGGTATTGCGTTTACGTGGTGG 390979 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || || ||||| || ||| | || ||| ||| | Sbjct 402202 ATGCAGATTTTTGTCAAGACTTTGACCGGTAAAACTATCACCTTAGAGGTCGAG-CCATC 402260 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || | | ||| | || ||| || ||| |||||||| ||| | || ||||| Sbjct 402261 TGATAGTATTGAGAATGTTAAAGCTAAGATTCAAGATAAAGAGGGCATTCCTCCAGATCA 402320 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || |||| ||| ||||||||||| || |||| || | | |||||||| Sbjct 402321 ACAACGTCTCATTTTTGCTGGCAAACAATTGGAGGATGGTCGCACTTTATCTGATTATAA 402380 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 ||||| || |||||||| | ||| ||||| || | | || |||||| Sbjct 402381 TATTCAGAAGGAGTCTACACTCCATTTGGTGCTGCGTCTTCGCGGAGGA 402429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425213666889040