Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq9966 98.7 8e-16 SEQ18478 93.3 3e-14 SEQ18352 93.3 3e-14 >seq9966 Length=18433 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| |||| | || |||| ||| || || ||||||||||| ||||||||||||| Sbjct 14123 CCTCCACGTAAACGCAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGAT 14182 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| || | ||| ||||| || |||| | || ||||| || Sbjct 14183 AAGGT----GCGTCCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGG 14238 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 || | |||||| || || |||| |||||| | | | |||||| ||||| Sbjct 14239 TGGAATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTC 14298 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| ||||| || || ||||||| ||||| || || |||||||||||| Sbjct 14299 AACTTCCAAAGTGATAGTCTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTTG 14353 >SEQ18478 Length=82247 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || |||| | || |||| ||| || || ||||||||||| ||||||||||||| Sbjct 41412 CCACCACGTAAACGCAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGAT 41471 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| || | ||| ||||| || |||| | || ||||| || Sbjct 41472 AAGGT----GCGTCCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGG 41527 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 || | |||||| || || |||| |||||| | | | |||||| ||||| Sbjct 41528 TGGAATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTC 41587 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| ||||| || || ||||||| ||||| || || |||||||||||| Sbjct 41588 AACTTCCAAAGTGATAGTCTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTTG 41642 >SEQ18352 Length=541547 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| || || || || |||||||| ||||||||||||| Sbjct 389155 CCACCACGTAGACGCAAGACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAG 389096 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||||||| || || ||| |||| | || |||||||| || Sbjct 389095 AGGGTACGCCCATCCTCCAATTGCTTACCAGCAAAAATTAAACGTTGTTGGTCTGGTGGA 389036 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || || || ||||| ||| || | | | |||||| ||||| | Sbjct 389035 ATACCTTCCTTATCCTGAATTTTAGCCTTGACATTTTCAATGGTGTCGGATGGCTCGACT 388976 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAG 16942 |||| || |||||||| || |||| ||||| ||||| || ||||| ||| || Sbjct 388975 TCCAAAGTAATGGTTTTACCAGTCAAAGTTTTCACAAAGATTTGCATGTTGAAG 388922 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | | ||||| ||| || ||||| ||||| |||||||||||||| | Sbjct 390523 CCACCACGTAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGTATGTTGTAGTCAGAT 390464 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| || || || || |||| | ||||| || || || Sbjct 390463 AAGGTACGACCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 390404 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| ||||| ||| || | | | ||| || || || | Sbjct 390403 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCAACT 390344 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||||||| || |||| || |||||||| |||||||| Sbjct 390343 TCCAATGTAATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 390297 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | | ||||| ||||| || || ||||| || || ||||| |||| Sbjct 401288 CCGCCACGTAGACGTAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAG 401229 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||||||||| || ||| | || | || |||||||| ||| Sbjct 401228 AGGGTGCGACCATCTTCCAATTGTTTACCAGCAAATATCAAACGTTGTTGGTCTGGAGGA 401169 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| ||||| ||| || | | | | | || || || | Sbjct 401168 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTCTCAATACTATCAGATGGTTCGACT 401109 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || ||||| || |||||||| ||||| ||||| |||||||| Sbjct 401108 TCTAGTGTAATGGTCTTGCCGGTCAGGGTTTTAACAAATATCTGCAT 401062 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | | ||||| ||| || ||||| || || |||||||||||||| | Sbjct 402200 CCGCCACGTAGGCGTAATACCAAATGAAGTGTGGATTCTTTCTGTATGTTGTAGTCAGAG 402141 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||||||||| || || |||| | || |||||||| ||| Sbjct 402140 AGGGTGCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGA 402081 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| ||||| || ||||| ||| || | | | ||||| | || | Sbjct 402080 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACGTTCTCAATCGTGTCAGATGCTTCGACT 402021 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||||||| || |||| ||||| ||||| |||||||| Sbjct 402020 TCCAATGTAATGGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 401974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || ||||| ||| | || || |||||||| |||||||| |||| Sbjct 390751 CCACCACGTAGACGCAATACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGAG 390692 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || || | ||||||||| ||| | || | |||||||| || ||| Sbjct 390691 AGAGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATTAAACGCTGTTGATCTGGAGGA 390632 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||| | ||| ||||| | | | |||||| ||||| Sbjct 390631 ATACCTTCTTTGTCTTGAATCTTAGCT--TTCACATTTTCAATAGTGTCAGATGGCTCGA 390574 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||||| || |||| || || || || |||||||| Sbjct 390573 CCTCCAAAGTGATGGTTTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 390525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404963873694580