Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq9966 98.7 8e-16
SEQ18478 93.3 3e-14
SEQ18352 93.3 3e-14
>seq9966
Length=18433
Score = 98.7 bits (108), Expect = 8e-16
Identities = 163/235 (69%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| |||| | || |||| ||| || || ||||||||||| |||||||||||||
Sbjct 14123 CCTCCACGTAAACGCAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGAT 14182
Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824
| ||| |||||| || | ||| ||||| || |||| | || ||||| ||
Sbjct 14183 AAGGT----GCGTCCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGG 14238
Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884
|| | |||||| || || |||| |||||| | | | |||||| |||||
Sbjct 14239 TGGAATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTC 14298
Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
||||| ||||| || || ||||||| ||||| || || ||||||||||||
Sbjct 14299 AACTTCCAAAGTGATAGTCTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTTG 14353
>SEQ18478
Length=82247
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/235 (69%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || |||| | || |||| ||| || || ||||||||||| |||||||||||||
Sbjct 41412 CCACCACGTAAACGCAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGAT 41471
Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824
| ||| |||||| || | ||| ||||| || |||| | || ||||| ||
Sbjct 41472 AAGGT----GCGTCCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGG 41527
Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884
|| | |||||| || || |||| |||||| | | | |||||| |||||
Sbjct 41528 TGGAATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTC 41587
Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
||||| ||||| || || ||||||| ||||| || || ||||||||||||
Sbjct 41588 AACTTCCAAAGTGATAGTCTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTTG 41642
>SEQ18352
Length=541547
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || |||| || || || || |||||||| |||||||||||||
Sbjct 389155 CCACCACGTAGACGCAAGACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAG 389096
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||||||| || || ||| |||| | || |||||||| ||
Sbjct 389095 AGGGTACGCCCATCCTCCAATTGCTTACCAGCAAAAATTAAACGTTGTTGGTCTGGTGGA 389036
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || || || || ||||| ||| || | | | |||||| ||||| |
Sbjct 389035 ATACCTTCCTTATCCTGAATTTTAGCCTTGACATTTTCAATGGTGTCGGATGGCTCGACT 388976
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAG 16942
|||| || |||||||| || |||| ||||| ||||| || ||||| ||| ||
Sbjct 388975 TCCAAAGTAATGGTTTTACCAGTCAAAGTTTTCACAAAGATTTGCATGTTGAAG 388922
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | | ||||| ||| || ||||| ||||| |||||||||||||| |
Sbjct 390523 CCACCACGTAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGTATGTTGTAGTCAGAT 390464
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || ||||| || || || || |||| | ||||| || || ||
Sbjct 390463 AAGGTACGACCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 390404
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||||||||| ||||| ||| || | | | ||| || || || |
Sbjct 390403 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCAACT 390344
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || |||||||| || |||| || |||||||| ||||||||
Sbjct 390343 TCCAATGTAATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 390297
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | | ||||| ||||| || || ||||| || || ||||| ||||
Sbjct 401288 CCGCCACGTAGACGTAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAG 401229
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || ||||||||||| || ||| | || | || |||||||| |||
Sbjct 401228 AGGGTGCGACCATCTTCCAATTGTTTACCAGCAAATATCAAACGTTGTTGGTCTGGAGGA 401169
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||||||||| ||||| ||| || | | | | | || || || |
Sbjct 401168 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTCTCAATACTATCAGATGGTTCGACT 401109
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | || ||||| || |||||||| ||||| ||||| ||||||||
Sbjct 401108 TCTAGTGTAATGGTCTTGCCGGTCAGGGTTTTAACAAATATCTGCAT 401062
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | | ||||| ||| || ||||| || || |||||||||||||| |
Sbjct 402200 CCGCCACGTAGGCGTAATACCAAATGAAGTGTGGATTCTTTCTGTATGTTGTAGTCAGAG 402141
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || ||||||||||| || || |||| | || |||||||| |||
Sbjct 402140 AGGGTGCGACCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGA 402081
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| ||||| || ||||| ||| || | | | ||||| | || |
Sbjct 402080 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACGTTCTCAATCGTGTCAGATGCTTCGACT 402021
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || |||||||| || |||| ||||| ||||| ||||||||
Sbjct 402020 TCCAATGTAATGGTTTTGCCAGTCAAGGTTTTTACAAATATCTGCAT 401974
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || ||||| ||| | || || |||||||| |||||||| ||||
Sbjct 390751 CCACCACGTAGACGCAATACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGAG 390692
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | || || | ||||||||| ||| | || | |||||||| || |||
Sbjct 390691 AGAGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATTAAACGCTGTTGATCTGGAGGA 390632
Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || |||||||| ||| | ||| ||||| | | | |||||| |||||
Sbjct 390631 ATACCTTCTTTGTCTTGAATCTTAGCT--TTCACATTTTCAATAGTGTCAGATGGCTCGA 390574
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||||||| || |||| || || || || ||||||||
Sbjct 390573 CCTCCAAAGTGATGGTTTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 390525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404963873694580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |