Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value SEQ22021 98.7 8e-16 SEQ10664 98.7 8e-16 SEQ18352 91.5 1e-13 >SEQ22021 Length=3403 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | |||||| |||||| Sbjct 2868 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 2809 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 2808 ATAACTGATATAATGAGCCTTTTGCGGTTTC 2778 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | |||||| |||||| Sbjct 2868 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 2809 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 2808 ATAACTGATATAATGAGCCTTTTGCGGTTTC 2778 >SEQ10664 Length=18453 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | |||||| |||||| Sbjct 17913 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 17854 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 17853 ATAACTGATATAATGAGCCTTTTGCGGTTTC 17823 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | |||||| |||||| Sbjct 17913 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 17854 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 17853 ATAACTGATATAATGAGCCTTTTGCGGTTTC 17823 >SEQ18352 Length=541547 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTC 33977 |||| |||||| ||| |||||||||||||||||||| | || || || | || || Sbjct 400130 ACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGA-AAGAGTACGTCCATCTTC 400072 Query 33978 CAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCAT 34037 |||||| || ||||||||||||| || || ||||| || | || ||||||||| Sbjct 400071 CAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTCTTG 400012 Query 34038 AATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096 |||||| ||||| | ||| | ||||||| | |||| || | || || |||| Sbjct 400011 AATTTTAGCCTTAA-CGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATAGTTT 399953 Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || || | || || ||||| || ||||| Sbjct 399952 TGCCTGTCAAAGTCTTTACAAAAATCTGCAT 399922 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTC 33977 |||| |||||| ||| |||||||||||||||||||| | || || || | || || Sbjct 400586 ACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGA-AAGAGTACGTCCATCTTC 400528 Query 33978 CAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCAT 34037 |||||| || ||||||||||||| || || ||||| || | || ||||||||| Sbjct 400527 CAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTCTTG 400468 Query 34038 AATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096 |||||| ||||| | ||| | ||||||| | |||| || | || || |||| Sbjct 400467 AATTTTAGCCTTAA-CGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATCGTTT 400409 Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || |||| || || || || || ||||| Sbjct 400408 TGCCTGTTAAAGTCTTAACGAAAATCTGCAT 400378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTC 33977 |||| |||||| ||| |||||||||||||||||||| | || || || | || || Sbjct 401498 ACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGA-AAGAGTACGTCCATCTTC 401440 Query 33978 CAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCAT 34037 |||||| || ||||||||||||| || || ||||| || | || ||||||||| Sbjct 401439 CAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTCTTG 401380 Query 34038 AATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096 |||||| ||||| | ||| | ||||||| | |||| || | || || |||| Sbjct 401379 AATTTTAGCCTTAA-CGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATCGTTT 401321 Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || |||| || || || || || ||||| Sbjct 401320 TGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401290 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTC 33977 |||| |||||| ||| |||||||||||||||||||| | || || || | || || Sbjct 401954 ACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGA-AAGAGTACGTCCATCTTC 401896 Query 33978 CAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCAT 34037 |||||| || ||||||||||||| || || || || || | || ||||||||| Sbjct 401895 CAATTGTTTACCGGCAAATATCAAACGTTGTTGGTCTGGAGGAATGCCCTCTTTGTCTTG 401836 Query 34038 AATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096 |||||| ||| | | ||| | |||||||| | |||| || | || || |||| Sbjct 401835 AATTTTAGCCTTGA-CGTTCTCAATACTATCAGATGGTTCGACCTCTAAGGTGATCGTTT 401777 Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || |||| || || || || || ||||| Sbjct 401776 TGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396940732883884