Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
SEQ22021 98.7 8e-16
SEQ10664 98.7 8e-16
SEQ18352 91.5 1e-13
>SEQ22021
Length=3403
Score = 98.7 bits (108), Expect = 8e-16
Identities = 78/91 (86%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588
|||||||| |||||||||||||||| |||||||||||||||| | |||||| ||||||
Sbjct 2868 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 2809
Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619
| |||||||||| |||||| || | ||| ||
Sbjct 2808 ATAACTGATATAATGAGCCTTTTGCGGTTTC 2778
Score = 98.7 bits (108), Expect = 8e-16
Identities = 78/91 (86%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391
|||||||| |||||||||||||||| |||||||||||||||| | |||||| ||||||
Sbjct 2868 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 2809
Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422
| |||||||||| |||||| || | ||| ||
Sbjct 2808 ATAACTGATATAATGAGCCTTTTGCGGTTTC 2778
>SEQ10664
Length=18453
Score = 98.7 bits (108), Expect = 8e-16
Identities = 78/91 (86%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588
|||||||| |||||||||||||||| |||||||||||||||| | |||||| ||||||
Sbjct 17913 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 17854
Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619
| |||||||||| |||||| || | ||| ||
Sbjct 17853 ATAACTGATATAATGAGCCTTTTGCGGTTTC 17823
Score = 98.7 bits (108), Expect = 8e-16
Identities = 78/91 (86%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391
|||||||| |||||||||||||||| |||||||||||||||| | |||||| ||||||
Sbjct 17913 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 17854
Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422
| |||||||||| |||||| || | ||| ||
Sbjct 17853 ATAACTGATATAATGAGCCTTTTGCGGTTTC 17823
>SEQ18352
Length=541547
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTC 33977
|||| |||||| ||| |||||||||||||||||||| | || || || | || ||
Sbjct 400130 ACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGA-AAGAGTACGTCCATCTTC 400072
Query 33978 CAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCAT 34037
|||||| || ||||||||||||| || || ||||| || | || |||||||||
Sbjct 400071 CAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTCTTG 400012
Query 34038 AATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096
|||||| ||||| | ||| | ||||||| | |||| || | || || ||||
Sbjct 400011 AATTTTAGCCTTAA-CGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATAGTTT 399953
Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
| || || | || || ||||| || |||||
Sbjct 399952 TGCCTGTCAAAGTCTTTACAAAAATCTGCAT 399922
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTC 33977
|||| |||||| ||| |||||||||||||||||||| | || || || | || ||
Sbjct 400586 ACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGA-AAGAGTACGTCCATCTTC 400528
Query 33978 CAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCAT 34037
|||||| || ||||||||||||| || || ||||| || | || |||||||||
Sbjct 400527 CAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTCTTG 400468
Query 34038 AATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096
|||||| ||||| | ||| | ||||||| | |||| || | || || ||||
Sbjct 400467 AATTTTAGCCTTAA-CGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATCGTTT 400409
Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
| || |||| || || || || || |||||
Sbjct 400408 TGCCTGTTAAAGTCTTAACGAAAATCTGCAT 400378
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTC 33977
|||| |||||| ||| |||||||||||||||||||| | || || || | || ||
Sbjct 401498 ACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGA-AAGAGTACGTCCATCTTC 401440
Query 33978 CAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCAT 34037
|||||| || ||||||||||||| || || ||||| || | || |||||||||
Sbjct 401439 CAATTGTTTACCGGCAAATATCAAACGTTGTTGATCTGGAGGAATGCCCTCTTTGTCTTG 401380
Query 34038 AATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096
|||||| ||||| | ||| | ||||||| | |||| || | || || ||||
Sbjct 401379 AATTTTAGCCTTAA-CGTTCTCAATGCTATCAGATGGTTCGACCTCTAAGGTGATCGTTT 401321
Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
| || |||| || || || || || |||||
Sbjct 401320 TGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401290
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTCGTC 33977
|||| |||||| ||| |||||||||||||||||||| | || || || | || ||
Sbjct 401954 ACCAAATGAAGTGTGGATTCCTTCTGAATGTTGTAATCGGA-AAGAGTACGTCCATCTTC 401896
Query 33978 CAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCAT 34037
|||||| || ||||||||||||| || || || || || | || |||||||||
Sbjct 401895 CAATTGTTTACCGGCAAATATCAAACGTTGTTGGTCTGGAGGAATGCCCTCTTTGTCTTG 401836
Query 34038 AATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTT 34096
|||||| ||| | | ||| | |||||||| | |||| || | || || ||||
Sbjct 401835 AATTTTAGCCTTGA-CGTTCTCAATACTATCAGATGGTTCGACCTCTAAGGTGATCGTTT 401777
Query 34097 TTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
| || |||| || || || || || |||||
Sbjct 401776 TGCCTGTTAAAGTCTTAACGAAAATCTGCAT 401746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396940732883884
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |