Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9966 131 2e-25 SEQ18478 125 8e-24 SEQ18352 113 5e-20 >seq9966 Length=18433 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | |||||||||||||| ||| | ||| ||||||||| || |||||||||||| Sbjct 14123 CCTCCACGTAAACGCAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGAT 14182 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || || |||||||| ||||| ||||| || || || || | || Sbjct 14183 AAGGTGCGTCCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 14242 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||| || ||| || ||| | | | | |||||| | || || Sbjct 14243 ATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTCAACT 14302 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 |||| ||||| || ||||| |||| |||||||| || || |||||||||| Sbjct 14303 TCCAAAGTGATAGTCTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTTGC 14354 >SEQ18478 Length=82247 Score = 125 bits (138), Expect = 8e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | |||||||||||||| ||| | ||| ||||||||| || |||||||||||| Sbjct 41412 CCACCACGTAAACGCAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTGTAGTCGGAT 41471 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || || |||||||| ||||| ||||| || || || || | || Sbjct 41472 AAGGTGCGTCCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 41531 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||| || ||| || ||| | | | | |||||| | || || Sbjct 41532 ATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATTGTGTCGGAAGGCTCAACT 41591 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 |||| ||||| || ||||| |||| |||||||| || || |||||||||| Sbjct 41592 TCCAAAGTGATAGTCTTGCCGGTCAAAGTTTTAACGAATATCTGCATTTTGC 41643 >SEQ18352 Length=541547 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| || |||| |||||| ||| ||||| || |||||||| ||||| Sbjct 400832 CCGCCACGTAGACGTAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAG 400773 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || | ||||| || ||||| ||||| || || ||||| | || Sbjct 400772 AGAGTACGTCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGA 400713 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| || || ||||| ||||| || | | ||||| | ||| || Sbjct 400712 ATGCCCTCTTTATCTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGATGCTTCGACT 400653 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||| || |||||||| |||| ||||||||||| || ||||| Sbjct 400652 TCCAACGTAATTGTTTTGCCAGTCAAGGTTTTAACAAATATCTGCAT 400606 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| || |||| |||||| ||| ||||| || |||||||| ||||| Sbjct 401744 CCGCCACGTAGACGTAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAG 401685 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || | ||||| || ||||| ||||| || || ||||| | || Sbjct 401684 AGAGTACGTCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGA 401625 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| || || ||||| ||||| || | | ||||| | ||| || Sbjct 401624 ATGCCCTCTTTATCTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGATGCTTCGACT 401565 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || |||||||| |||| ||||||||||| || ||||| Sbjct 401564 TCCAATGTAATTGTTTTGCCAGTCAAGGTTTTAACAAATATCTGCAT 401518 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| || |||| |||||| ||| |||||||| |||||||| || || Sbjct 400376 CCGCCACGTAGACGTAATACCAAATGCAAAGTAGATTCCTTTTGAATATTGTAATCAGAG 400317 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || | || || || ||||| ||||| || || ||||| | || Sbjct 400316 AGGGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGA 400257 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| || || ||||| ||||| || | | |||||| | ||| || Sbjct 400256 ATGCCCTCTTTATCTTGAATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCTTCGACT 400197 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || |||||||| |||| ||||||||||| || ||||| Sbjct 400196 TCCAATGTAATAGTTTTGCCAGTCAAGGTTTTAACAAATATCTGCAT 400150 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | ||| ||||||||||| |||||||| ||| Sbjct 389383 CCACCACGTAGACGCAAGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAT 389324 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || | |||||| || ||||| ||||| ||||| ||||| | || Sbjct 389323 AACGTGCGACCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 389264 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || || |||||| ||||| | | | || || | ||| || Sbjct 389263 ATGCCTTCTTTATCTTGGATCTTAGCCTTGACGTTTTCAATTGTATCAGATGGTTCAACT 389204 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||||||||| |||| || || || || |||||||| Sbjct 389203 TCCAATGTAATGGTTTTGCCAGTCAAAGTCTTGACGAAAATTTGCAT 389157 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | ||| |||||||||||| |||||||| ||| Sbjct 389839 CCACCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAT 389780 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || ||||||||||| ||||| ||||| ||||| || || | || Sbjct 389779 AAGGTACGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGAGGA 389720 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| | | | ||||| | || || Sbjct 389719 ATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCGACC 389660 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||||||||| |||| || || || ||||||||||| Sbjct 389659 TCTAAAGTAATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 389613 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | ||| |||||||||||| |||||||| ||| Sbjct 391207 CCACCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAT 391148 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || ||||||||||| ||||| ||||| ||||| || || | || Sbjct 391147 AAGGTACGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGAGGA 391088 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| |||| | | | ||||| | || || Sbjct 391087 ATACCTTCTTTGTCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCGACC 391028 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||||||||| |||| || || || ||||||||||| Sbjct 391027 TCTAAAGTAATGGTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 390981 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | ||| || || ||||| ||||||||||| Sbjct 390067 CCACCACGTAGACGCAAGACCAAGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAC 390008 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || ||||||||||| ||||| ||||| |||||||| || | || Sbjct 390007 AAAGTACGACCATCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGTGGA 389948 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || ||||| ||| || ||| | | | | || || | ||| || Sbjct 389947 ATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTATCAGATGGTTCAACC 389888 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||||||||| |||| || || || ||||| ||||| Sbjct 389887 TCCAAAGTAATGGTTTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 389841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| || |||| |||||| ||| ||||| || |||||||| ||||| Sbjct 401288 CCGCCACGTAGACGTAATACCAAATGCAAAGTAGATTCCTTCTGAATATTGTAATCGGAG 401229 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | || || || || |||||||| || || ||||| | || Sbjct 401228 AGGGTGCGACCATCTTCCAATTGTTTACCAGCAAATATCAAACGTTGTTGGTCTGGAGGA 401169 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| ||||| || || ||||| || | | | || | ||| || Sbjct 401168 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACGTTCTCAATACTATCAGATGGTTCGACT 401109 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| ||||| ||||| ||||||||||| || ||||| Sbjct 401108 TCTAGTGTAATGGTCTTGCCGGTCAGGGTTTTAACAAATATCTGCAT 401062 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| || |||| ||| | ||| ||||| || || |||||||| ||| Sbjct 390523 CCACCACGTAGACGTAATACCAAATGAAGTGTGGATTCCTTCTGTATGTTGTAGTCAGAT 390464 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | |||||| || ||||| ||||| |||||||| || | || Sbjct 390463 AAGGTACGACCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 390404 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| ||||| || || ||||| | | | || || | ||| || Sbjct 390403 ATGCCCTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATAGTATCAGATGGTTCAACT 390344 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||||||||| |||| || || |||||||| ||||| Sbjct 390343 TCCAATGTAATGGTTTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 390297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | || |||||||| || ||||||||||| Sbjct 389155 CCACCACGTAGACGCAAGACCAAGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAG 389096 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || ||| | || || | ||||| || || || || || || || ||||| | || Sbjct 389095 AGGGTACGCCCATCCTCCAATTGCTTACCAGCAAAAATTAAACGTTGTTGGTCTGGTGGA 389036 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| || || ||||| | | | |||||| | || || Sbjct 389035 ATACCTTCCTTATCCTGAATTTTAGCCTTGACATTTTCAATGGTGTCGGATGGCTCGACT 388976 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| || |||||||| || |||| ||||| |||||||||||||| ||| Sbjct 388975 TCCAAAGTAATGGTTTTACCAGTCAAAGTTTTCACAAAGATTTGCATGTTG 388925 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| ||| || ||| ||||||||||| ||||| ||||| Sbjct 389611 CCACCACGTAGACGCAATACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAATCGGAG 389552 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || || || ||||| || || || || || || || || | || Sbjct 389551 AGAGTACGACCATCTTCAAGTTGTTTGCCAGCAAAGATTAAACGTTGTTGATCTGGAGGA 389492 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| ||||| |||| | | | ||||| | || || Sbjct 389491 ATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCGACC 389432 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||||||||| |||| || || || ||||| ||||| Sbjct 389431 TCCAAAGTGATGGTTTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 389385 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| |||| ||| | ||| ||||| || || || ||||| || | ||||| | Sbjct 391423 CGCAAGACCAAATGAAGTGTTGATTCCTTCTGAATGTTATAGTCAGACAAGGTGCGACCA 391364 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | |||||| || ||||| ||||| |||||||| || | || | || ||| ||| Sbjct 391363 TCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCTTTG 391304 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| || | | | | ||||| | ||| || |||| || ||| Sbjct 391303 TCTTGGATCTTAGCTTTAACATTTTCAATGGTGTCAGATGGTTCAACCTCCAAAGTAATG 391244 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| |||| || || || ||||| ||||| Sbjct 391243 GTTTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 391209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565060759701840