Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value SEQ18371 109 6e-19 seq4733 104 3e-17 >SEQ18371 Length=67641 Score = 109 bits (120), Expect = 6e-19 Identities = 361/541 (67%), Gaps = 28/541 (5%) Strand=Plus/Plus Query 154578 GACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAAC 154637 || ||| ||||| |||||||| || || || | ||| ||||| || |||||||| Sbjct 52517 GAATTAGAGAAAGATTTATGTGAAATTACTGGTTACGATAGAATATCCTTCCAACCTAAT 52576 Query 154638 GCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATC 154696 ||||| | || ||||| || || || | || || | ||| || ||| || | | Sbjct 52577 TCAGGAGCTCAAGGTGAATACGCTGGTTTACGCGCTATTCGTAGC-TATCATGAAC-ACC 52634 Query 154697 AGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTG 154755 | || | | | | ||| ||||| | || ||| || |||||||| || ||||||| Sbjct 52635 GTAATGAAGGTCATCGCAATATATGTCTCATTCCAATATCGGCACATGGCACAAATCCTG 52694 Query 154756 CTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT--GATGGTAA 154813 || || ||||| || |||||||| | | | | || | || || || |||| Sbjct 52695 CTTCCGCACAAATGGCTGGTATGAAAGTGGAACCCAT-ACGTAT-ATTATCTGACGGTAG 52752 Query 154814 CATAGACATCAAAGATCTA---GAGAAGAAAGCA-ATCATGAATACATTTGAACTGTCAT 154869 ||| || || | || || || ||| || | |||||| | | ||||| || | Sbjct 52753 CATTGATATGAGTCATTTACGTGATAAGGCCGCTGAACATGAA-AGA---GAACTTTCTT 52808 Query 154870 GTATTATGATTACATACCCATCTACACAT-GGTGTATTTGAAACTAACATTAGACAGATA 154928 | ||||||||||||| || || || ||| || || |||| | ||| | | |||||| Sbjct 52809 GCCTTATGATTACATATCCCTCAAC-CATGGGCGTTTTTG-AGGAAACTGTTG-CAGATA 52865 Query 154929 TGTAAGATCGTTCATGACA-----ATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAA 154983 | | ||| || || ||| |||| || || || ||| | ||||| || || | | Sbjct 52866 TTTGTGAT--TTAAT-ACATCGTCATGGAGGACAAGTGTATTTAGATGGTGCTAACATGA 52922 Query 154984 ATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACT 155043 ||||||| || ||||| | ||| | || || || ||||| | ||| | || | Sbjct 52923 ATGCACAAGTTGGACTTTGCAGACCCGGCGATTACGGCAGCGATGTTTCTCACTTGAATT 52982 Query 155044 TACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTG 155103 | |||||||| ||||| || |||||||| ||||| |||||||| | ||||| ||||||| Sbjct 52983 TGCATAAAACTTTCTGCATACCACATGGTGGTGGTGGTCCTGGTATGGGTCCCATAGGTG 53042 Query 155104 T 155104 | Sbjct 53043 T 53043 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 153246 ATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCT 153305 |||| ||| ||| | |||| |||||| | ||| |||| || || ||||||||| || Sbjct 51026 ATACTGCGTAACATCTTTGAAAATCCTGGCTGGACCACACAATATACACCCTATCAACCT 51085 Query 153306 GAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTT 153365 |||||| |||| || | | ||| | ||| | || || || || | || | ||||| Sbjct 51086 GAGATAGCTCAAGGCCGTCTTGAATCATTACTGAACTATCAGACATTAGTCTCCGAACTG 51145 Query 153366 ACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCA 153425 ||||| || | || || ||||| |||| ||||||| || ||||| ||||||||| Sbjct 51146 ACAGGTTTGGATGTGGCTAATGCATCATTATTGGATGAAGGTACAGCAGCTGCAGAAGCA 51205 Query 153426 ATG 153428 ||| Sbjct 51206 ATG 51208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 153876 GATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGG 153935 |||| || ||| || | || ||| | ||||| ||||||| | ||||| || || | Sbjct 51785 GATATGGATGGTCATGATGCTTACCGTTTAGCTTTACAGACACGTGAGCAACACATACGT 51844 Query 153936 AGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGA 153995 | || || || |||||||| || || || || || ||||| || ||||||||||| | | Sbjct 51845 CGTGATAAGGCGACCAGTAATATTTGTACTGCACAAGCACTCCTAGCTAATATGTCAGCA 51904 Query 153996 TTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAA 154041 | ||||| ||||||||| | || ||||| | || ||||||| Sbjct 51905 ATGTATGCTATATATCATGGCCCTGAAGGACTTAAAGCCATAGCAA 51950 >seq4733 Length=8201 Score = 104 bits (114), Expect = 3e-17 Identities = 359/541 (66%), Gaps = 28/541 (5%) Strand=Plus/Plus Query 154578 GACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAAC 154637 || ||| ||||| |||||||| || || || | || ||||| || |||||||| Sbjct 6530 GAATTAGAGAAAGATTTATGTGAAATTACTGGTTACGAAAGAATATCCTTCCAACCTAAT 6589 Query 154638 GCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATC 154696 ||||| | || ||||| || || || | || || | ||| || ||| | | | | Sbjct 6590 TCAGGAGCTCAAGGTGAATACGCTGGTTTACGCGCTATTCGTAGC-TATCATGA-GCACC 6647 Query 154697 AGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTG 154755 | || | | | | ||| ||||| | || ||| || || ||||| || ||||||| Sbjct 6648 GTAATGAAGGTCATCGCAATATATGTCTCATTCCAATATCGGCGCATGGCACAAATCCTG 6707 Query 154756 CTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT--GATGGTAA 154813 || || ||||| || |||||||| | | | | || | || || || |||| Sbjct 6708 CTTCCGCACAAATGGCTGGTATGAAAGTGGAACCCAT-ACGTAT-ATTATCTGACGGTAG 6765 Query 154814 CATAGACATCAAAGATCTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCAT 154869 ||| || || | || || | ||||| | |||||| | | ||||| || | Sbjct 6766 CATTGATATGAGTCATTTACGTGATAAAGCCGCTGAACATGAA-AGA---GAACTTTCTT 6821 Query 154870 GTATTATGATTACATACCCATCTACACAT-GGTGTATTTGAAACTAACATTAGACAGATA 154928 | |||||||||||||||| || || ||| || || |||| | ||| | | |||||| Sbjct 6822 GCCTTATGATTACATACCCCTCAAC-CATGGGCGTTTTTG-AGGAAACTGTTG-CAGATA 6878 Query 154929 TGTAAGATCGTTCATGACA-----ATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAA 154983 | | ||| || || ||| |||| || || || ||| | ||||| || || | | Sbjct 6879 TTTGTGAT--TTAAT-ACATCGTCATGGAGGACAAGTGTATTTAGATGGTGCTAACATGA 6935 Query 154984 ATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACT 155043 ||||||| || ||||| | ||| | || || || ||||| | ||| | || | Sbjct 6936 ATGCACAAGTTGGACTTTGCAGACCCGGCGATTACGGCAGCGATGTTTCTCACTTGAATT 6995 Query 155044 TACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTG 155103 | |||||||| ||||| || |||||||| ||||| |||||||| | ||||| ||||||| Sbjct 6996 TGCATAAAACTTTCTGCATACCACATGGTGGTGGTGGTCCTGGTATGGGTCCCATAGGTG 7055 Query 155104 T 155104 | Sbjct 7056 T 7056 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 153876 GATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGG 153935 |||| || || || | || ||| | ||||| ||||||| | ||||| || || | Sbjct 5798 GATATGGATGGCCATGATGCTTACCGTTTAGCTTTACAGACACGTGAGCAACACATACGT 5857 Query 153936 AGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGA 153995 | || || || |||||||| || || || || || ||||| || ||||||||||| | | Sbjct 5858 CGTGATAAGGCGACCAGTAATATTTGTACTGCACAAGCACTCCTAGCTAATATGTCAGCA 5917 Query 153996 TTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAA 154041 | ||||| ||||||||| | || ||||| | || ||||||| Sbjct 5918 ATGTATGCTATATATCATGGCCCTGAAGGACTTAAAGCCATAGCAA 5963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579030767897280