Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
SEQ18371 109 6e-19
seq4733 104 3e-17
>SEQ18371
Length=67641
Score = 109 bits (120), Expect = 6e-19
Identities = 361/541 (67%), Gaps = 28/541 (5%)
Strand=Plus/Plus
Query 154578 GACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAAC 154637
|| ||| ||||| |||||||| || || || | ||| ||||| || ||||||||
Sbjct 52517 GAATTAGAGAAAGATTTATGTGAAATTACTGGTTACGATAGAATATCCTTCCAACCTAAT 52576
Query 154638 GCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATC 154696
||||| | || ||||| || || || | || || | ||| || ||| || | |
Sbjct 52577 TCAGGAGCTCAAGGTGAATACGCTGGTTTACGCGCTATTCGTAGC-TATCATGAAC-ACC 52634
Query 154697 AGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTG 154755
| || | | | | ||| ||||| | || ||| || |||||||| || |||||||
Sbjct 52635 GTAATGAAGGTCATCGCAATATATGTCTCATTCCAATATCGGCACATGGCACAAATCCTG 52694
Query 154756 CTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT--GATGGTAA 154813
|| || ||||| || |||||||| | | | | || | || || || ||||
Sbjct 52695 CTTCCGCACAAATGGCTGGTATGAAAGTGGAACCCAT-ACGTAT-ATTATCTGACGGTAG 52752
Query 154814 CATAGACATCAAAGATCTA---GAGAAGAAAGCA-ATCATGAATACATTTGAACTGTCAT 154869
||| || || | || || || ||| || | |||||| | | ||||| || |
Sbjct 52753 CATTGATATGAGTCATTTACGTGATAAGGCCGCTGAACATGAA-AGA---GAACTTTCTT 52808
Query 154870 GTATTATGATTACATACCCATCTACACAT-GGTGTATTTGAAACTAACATTAGACAGATA 154928
| ||||||||||||| || || || ||| || || |||| | ||| | | ||||||
Sbjct 52809 GCCTTATGATTACATATCCCTCAAC-CATGGGCGTTTTTG-AGGAAACTGTTG-CAGATA 52865
Query 154929 TGTAAGATCGTTCATGACA-----ATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAA 154983
| | ||| || || ||| |||| || || || ||| | ||||| || || | |
Sbjct 52866 TTTGTGAT--TTAAT-ACATCGTCATGGAGGACAAGTGTATTTAGATGGTGCTAACATGA 52922
Query 154984 ATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACT 155043
||||||| || ||||| | ||| | || || || ||||| | ||| | || |
Sbjct 52923 ATGCACAAGTTGGACTTTGCAGACCCGGCGATTACGGCAGCGATGTTTCTCACTTGAATT 52982
Query 155044 TACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTG 155103
| |||||||| ||||| || |||||||| ||||| |||||||| | ||||| |||||||
Sbjct 52983 TGCATAAAACTTTCTGCATACCACATGGTGGTGGTGGTCCTGGTATGGGTCCCATAGGTG 53042
Query 155104 T 155104
|
Sbjct 53043 T 53043
Score = 91.5 bits (100), Expect = 2e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 153246 ATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCT 153305
|||| ||| ||| | |||| |||||| | ||| |||| || || ||||||||| ||
Sbjct 51026 ATACTGCGTAACATCTTTGAAAATCCTGGCTGGACCACACAATATACACCCTATCAACCT 51085
Query 153306 GAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTT 153365
|||||| |||| || | | ||| | ||| | || || || || | || | |||||
Sbjct 51086 GAGATAGCTCAAGGCCGTCTTGAATCATTACTGAACTATCAGACATTAGTCTCCGAACTG 51145
Query 153366 ACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCA 153425
||||| || | || || ||||| |||| ||||||| || ||||| |||||||||
Sbjct 51146 ACAGGTTTGGATGTGGCTAATGCATCATTATTGGATGAAGGTACAGCAGCTGCAGAAGCA 51205
Query 153426 ATG 153428
|||
Sbjct 51206 ATG 51208
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 153876 GATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGG 153935
|||| || ||| || | || ||| | ||||| ||||||| | ||||| || || |
Sbjct 51785 GATATGGATGGTCATGATGCTTACCGTTTAGCTTTACAGACACGTGAGCAACACATACGT 51844
Query 153936 AGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGA 153995
| || || || |||||||| || || || || || ||||| || ||||||||||| | |
Sbjct 51845 CGTGATAAGGCGACCAGTAATATTTGTACTGCACAAGCACTCCTAGCTAATATGTCAGCA 51904
Query 153996 TTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAA 154041
| ||||| ||||||||| | || ||||| | || |||||||
Sbjct 51905 ATGTATGCTATATATCATGGCCCTGAAGGACTTAAAGCCATAGCAA 51950
>seq4733
Length=8201
Score = 104 bits (114), Expect = 3e-17
Identities = 359/541 (66%), Gaps = 28/541 (5%)
Strand=Plus/Plus
Query 154578 GACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAAC 154637
|| ||| ||||| |||||||| || || || | || ||||| || ||||||||
Sbjct 6530 GAATTAGAGAAAGATTTATGTGAAATTACTGGTTACGAAAGAATATCCTTCCAACCTAAT 6589
Query 154638 GCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATC 154696
||||| | || ||||| || || || | || || | ||| || ||| | | | |
Sbjct 6590 TCAGGAGCTCAAGGTGAATACGCTGGTTTACGCGCTATTCGTAGC-TATCATGA-GCACC 6647
Query 154697 AGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTG 154755
| || | | | | ||| ||||| | || ||| || || ||||| || |||||||
Sbjct 6648 GTAATGAAGGTCATCGCAATATATGTCTCATTCCAATATCGGCGCATGGCACAAATCCTG 6707
Query 154756 CTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT--GATGGTAA 154813
|| || ||||| || |||||||| | | | | || | || || || ||||
Sbjct 6708 CTTCCGCACAAATGGCTGGTATGAAAGTGGAACCCAT-ACGTAT-ATTATCTGACGGTAG 6765
Query 154814 CATAGACATCAAAGATCTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCAT 154869
||| || || | || || | ||||| | |||||| | | ||||| || |
Sbjct 6766 CATTGATATGAGTCATTTACGTGATAAAGCCGCTGAACATGAA-AGA---GAACTTTCTT 6821
Query 154870 GTATTATGATTACATACCCATCTACACAT-GGTGTATTTGAAACTAACATTAGACAGATA 154928
| |||||||||||||||| || || ||| || || |||| | ||| | | ||||||
Sbjct 6822 GCCTTATGATTACATACCCCTCAAC-CATGGGCGTTTTTG-AGGAAACTGTTG-CAGATA 6878
Query 154929 TGTAAGATCGTTCATGACA-----ATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAA 154983
| | ||| || || ||| |||| || || || ||| | ||||| || || | |
Sbjct 6879 TTTGTGAT--TTAAT-ACATCGTCATGGAGGACAAGTGTATTTAGATGGTGCTAACATGA 6935
Query 154984 ATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACT 155043
||||||| || ||||| | ||| | || || || ||||| | ||| | || |
Sbjct 6936 ATGCACAAGTTGGACTTTGCAGACCCGGCGATTACGGCAGCGATGTTTCTCACTTGAATT 6995
Query 155044 TACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTG 155103
| |||||||| ||||| || |||||||| ||||| |||||||| | ||||| |||||||
Sbjct 6996 TGCATAAAACTTTCTGCATACCACATGGTGGTGGTGGTCCTGGTATGGGTCCCATAGGTG 7055
Query 155104 T 155104
|
Sbjct 7056 T 7056
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 153876 GATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGG 153935
|||| || || || | || ||| | ||||| ||||||| | ||||| || || |
Sbjct 5798 GATATGGATGGCCATGATGCTTACCGTTTAGCTTTACAGACACGTGAGCAACACATACGT 5857
Query 153936 AGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGA 153995
| || || || |||||||| || || || || || ||||| || ||||||||||| | |
Sbjct 5858 CGTGATAAGGCGACCAGTAATATTTGTACTGCACAAGCACTCCTAGCTAATATGTCAGCA 5917
Query 153996 TTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAA 154041
| ||||| ||||||||| | || ||||| | || |||||||
Sbjct 5918 ATGTATGCTATATATCATGGCCCTGAAGGACTTAAAGCCATAGCAA 5963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579030767897280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |