Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value SEQ18371 111 2e-19 seq4733 98.7 1e-15 >SEQ18371 Length=67641 Score = 111 bits (122), Expect = 2e-19 Identities = 359/538 (67%), Gaps = 22/538 (4%) Strand=Plus/Plus Query 159253 GACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAAC 159312 || ||| ||||| |||||||| || || || | ||| ||||| || |||||||| Sbjct 52517 GAATTAGAGAAAGATTTATGTGAAATTACTGGTTACGATAGAATATCCTTCCAACCTAAT 52576 Query 159313 GCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATC 159371 ||||| | || ||||| || || || | || || | ||| || ||| || | | Sbjct 52577 TCAGGAGCTCAAGGTGAATACGCTGGTTTACGCGCTATTCGTAGC-TATCATGAAC-ACC 52634 Query 159372 AGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTG 159430 | || | | | | ||| ||||| | || ||| || |||||||| || ||||||| Sbjct 52635 GTAATGAAGGTCATCGCAATATATGTCTCATTCCAATATCGGCACATGGCACAAATCCTG 52694 Query 159431 CATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT--GATGGCAA 159488 | || ||| ||||| || |||||||| | | | | || | || || || || | Sbjct 52695 CTTCCGCACAAATGGCTGGTATGAAAGTGGAACCCAT-ACGTAT-ATTATCTGACGGTAG 52752 Query 159489 CATAGACATCAAAGATCTA---GAGAAGAAAGCA-ATCATGAATACATTTGAACTGTCAT 159544 ||| || || | || || || ||| || | |||||| | | ||||| || | Sbjct 52753 CATTGATATGAGTCATTTACGTGATAAGGCCGCTGAACATGAA-AGA---GAACTTTCTT 52808 Query 159545 GTATTATGATTACATATCCATCTACACAT-GGTGTATTTGAAACAAACATCAGACAGATA 159603 | |||||||||||||||| || || ||| || || |||| | |||| | |||||| Sbjct 52809 GCCTTATGATTACATATCCCTCAAC-CATGGGCGTTTTTG-AGGAAAC-TGTTGCAGATA 52865 Query 159604 TGTAAGATT--GTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATG 159661 | | |||| | ||| |||| || || || ||| | |||||||| || | |||| Sbjct 52866 TTTGTGATTTAATACATCGTCATGGAGGACAAGTGTATTTAGATGGTGCTAACATGAATG 52925 Query 159662 CACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTAC 159721 |||| || || || | ||| | || || || ||||| | ||| | || || | Sbjct 52926 CACAAGTTGGACTTTGCAGACCCGGCGATTACGGCAGCGATGTTTCTCACTTGAATTTGC 52985 Query 159722 ATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||| || ||||| || |||||||| ||||| |||||||| | ||||| || ||||| Sbjct 52986 ATAAAACTTTCTGCATACCACATGGTGGTGGTGGTCCTGGTATGGGTCCCATAGGTGT 53043 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 158551 GATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGA 158610 |||| || ||| || | || ||| | ||||| ||||||| | ||||| || || | Sbjct 51785 GATATGGATGGTCATGATGCTTACCGTTTAGCTTTACAGACACGTGAGCAACACATACGT 51844 Query 158611 AGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGG 158670 | || || || |||||||| || || || ||||||||||| || ||||||||||| | Sbjct 51845 CGTGATAAGGCGACCAGTAATATTTGTACTGCACAAGCACTCCTAGCTAATATGTCAGCA 51904 Query 158671 TTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAA 158716 | ||||| ||||||||| | || ||||| | || ||||||| Sbjct 51905 ATGTATGCTATATATCATGGCCCTGAAGGACTTAAAGCCATAGCAA 51950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 157921 ATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCT 157980 |||| ||| ||| | |||| |||||| | ||| |||| || || ||||||||| || Sbjct 51026 ATACTGCGTAACATCTTTGAAAATCCTGGCTGGACCACACAATATACACCCTATCAACCT 51085 Query 157981 GAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTC 158040 |||||| |||| || | | ||| | ||| | || || || || | || | ||||| Sbjct 51086 GAGATAGCTCAAGGCCGTCTTGAATCATTACTGAACTATCAGACATTAGTCTCCGAACTG 51145 Query 158041 ACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCA 158100 ||||| | | || || ||||| |||| ||||||| || ||||| ||||||||| Sbjct 51146 ACAGGTTTGGATGTGGCTAATGCATCATTATTGGATGAAGGTACAGCAGCTGCAGAAGCA 51205 Query 158101 ATG 158103 ||| Sbjct 51206 ATG 51208 >seq4733 Length=8201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 355/538 (66%), Gaps = 22/538 (4%) Strand=Plus/Plus Query 159253 GACTTACAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAAC 159312 || ||| ||||| |||||||| || || || | || ||||| || |||||||| Sbjct 6530 GAATTAGAGAAAGATTTATGTGAAATTACTGGTTACGAAAGAATATCCTTCCAACCTAAT 6589 Query 159313 GCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATC 159371 ||||| | || ||||| || || || | || || | ||| || ||| | | | | Sbjct 6590 TCAGGAGCTCAAGGTGAATACGCTGGTTTACGCGCTATTCGTAGC-TATCATGA-GCACC 6647 Query 159372 AGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTG 159430 | || | | | | ||| ||||| | || ||| || || ||||| || ||||||| Sbjct 6648 GTAATGAAGGTCATCGCAATATATGTCTCATTCCAATATCGGCGCATGGCACAAATCCTG 6707 Query 159431 CATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT--GATGGCAA 159488 | || ||| ||||| || |||||||| | | | | || | || || || || | Sbjct 6708 CTTCCGCACAAATGGCTGGTATGAAAGTGGAACCCAT-ACGTAT-ATTATCTGACGGTAG 6765 Query 159489 CATAGACATCAAAGATCTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCAT 159544 ||| || || | || || | ||||| | |||||| | | ||||| || | Sbjct 6766 CATTGATATGAGTCATTTACGTGATAAAGCCGCTGAACATGAA-AGA---GAACTTTCTT 6821 Query 159545 GTATTATGATTACATATCCATCTACACAT-GGTGTATTTGAAACAAACATCAGACAGATA 159603 | ||||||||||||| || || || ||| || || |||| | |||| | |||||| Sbjct 6822 GCCTTATGATTACATACCCCTCAAC-CATGGGCGTTTTTG-AGGAAAC-TGTTGCAGATA 6878 Query 159604 TGTAAGATT--GTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATG 159661 | | |||| | ||| |||| || || || ||| | |||||||| || | |||| Sbjct 6879 TTTGTGATTTAATACATCGTCATGGAGGACAAGTGTATTTAGATGGTGCTAACATGAATG 6938 Query 159662 CACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTAC 159721 |||| || || || | ||| | || || || ||||| | ||| | || || | Sbjct 6939 CACAAGTTGGACTTTGCAGACCCGGCGATTACGGCAGCGATGTTTCTCACTTGAATTTGC 6998 Query 159722 ATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||| || ||||| || |||||||| ||||| |||||||| | ||||| || ||||| Sbjct 6999 ATAAAACTTTCTGCATACCACATGGTGGTGGTGGTCCTGGTATGGGTCCCATAGGTGT 7056 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 158551 GATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGA 158610 |||| || || || | || ||| | ||||| ||||||| | ||||| || || | Sbjct 5798 GATATGGATGGCCATGATGCTTACCGTTTAGCTTTACAGACACGTGAGCAACACATACGT 5857 Query 158611 AGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGG 158670 | || || || |||||||| || || || ||||||||||| || ||||||||||| | Sbjct 5858 CGTGATAAGGCGACCAGTAATATTTGTACTGCACAAGCACTCCTAGCTAATATGTCAGCA 5917 Query 158671 TTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGCAA 158716 | ||||| ||||||||| | || ||||| | || ||||||| Sbjct 5918 ATGTATGCTATATATCATGGCCCTGAAGGACTTAAAGCCATAGCAA 5963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587866390209120