Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2607 111 1e-19 seq5553 107 2e-18 SEQ18352 104 2e-17 >seq2607 Length=223464 Score = 111 bits (122), Expect = 1e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 28544 TTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAAC 28603 ||| || |||||||| ||||| || || || ||||||| || ||||| ||| || Sbjct 125041 TTGCGTCAAAATGCAGATATTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGT 124982 Query 28604 GGAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGC 28662 |||||| || || || | | || |||| || || | || |||||||||||| | | Sbjct 124981 GGAACCATCGGACACTATCGAAAATGTCAAAGCCAAGATTCAG-GACAAAGAGGGAATTC 124923 Query 28663 CCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 28722 | |||||| || | | || ||||| || ||||||||||||||| | || || Sbjct 124922 CTCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGCACATTGT 124863 Query 28723 CCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||| |||||||| ||||| || || ||| |||| || Sbjct 124862 CCGATTATAATATTCAAAAGGAATCAACACTTCACTTGGTGTT 124820 >seq5553 Length=18996 Score = 107 bits (118), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 28544 TTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAAC 28603 ||| || |||||||| ||||| || || || ||||||| || ||||| ||| || Sbjct 18349 TTGCGTCAAAATGCAGATATTCGTTAAGACCCTAACGGGCAAGACCATCACCCTTGAGGT 18408 Query 28604 GGAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGC 28662 ||||| || || || | | || |||| || || | || |||||||||||| | | Sbjct 18409 TGAACCATCGGACACTATCGAAAATGTCAAAGCCAAGATTCAG-GACAAAGAGGGAATTC 18467 Query 28663 CCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 28722 | |||||| || | | || ||||| || ||||||||||||||| | || || Sbjct 18468 CTCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGCACATTGT 18527 Query 28723 CCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||| |||||||| ||||| || || ||| |||| || Sbjct 18528 CCGATTATAATATTCAAAAGGAATCAACACTTCACTTGGTGTT 18570 >SEQ18352 Length=541547 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || || || || ||||||||||| || || || || Sbjct 390753 ATGCAAATCTTCGTCAAGACTTTGACTGGCAAAACCATTACTTTAGAGGTCGAGCCATCT 390812 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| || ||||| || | ||| ||||||| Sbjct 390813 GACACCATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGCATTCCCCCAGATCAA 390872 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| ||||||||| | |||||| | ||| || |||| || ||| Sbjct 390873 CAGCGTTTAATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACTTTGTCCGACTACAAC 390932 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||||||| | || ||||||| | ||||| || || || Sbjct 390933 ATCCAAAAGGAATCTACTTTACATTTGGTATTGCGTTTACGTGGTGGTAT 390982 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || || || || |||||||| || |||||||| || || |||||| Sbjct 399235 AAAATGCAGATCTTCGTGAAGACATTAACAGGCAAAACCATCACTTTGGAGGTGGAACCA 399294 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || | | | || | ||| |||||| |||||||| || | || |||| Sbjct 399295 TCTGATAGCATCGAAAATGTTAAGGCAAAAATTCAGGACAAAGAAGGCATTCCACCAGAT 399354 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| | | || ||||| || || ||| | |||||| | || | | |||||| Sbjct 399355 CAACAACGCTTAATATTTGCTGGTAAGCAACTTGAAGATGGTCGCACCCTTTCTGATTAT 399414 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||||||||| ||| | ||| |||| | | |||||||| ||||| Sbjct 399415 AACATACAAAAAGAATCCACTTTACACTTGGTCCTTCGTTTACGAGGTGGGAT 399467 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || ||||| || ||||| || ||| || ||||| || Sbjct 400834 ATGCAGATTTTCGTTAAGACTTTAACAGGCAAAACGATCACCTTAGAGGTCGAACCATCT 400893 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | ||| ||||| ||||||||||| | || ||||||| Sbjct 400894 GATAGCATTGAGAACGTTAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAA 400953 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || ||||| || ||||||||||||||| ||| | |||||||||| Sbjct 400954 CAACGTTTGATATTTGCCGGTAAACAATTGGAAGATGGACGTACTCTCTCCGATTATAAT 401013 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||||||| |||| |||||||| | |||| || || || Sbjct 401014 ATTCAAAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGGTAT 401063 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| | || || || |||||||| ||| ||||| || Sbjct 401062 ATGCAGATATTTGTTAAAACCCTGACCGGCAAGACCATTACACTAGAAGTCGAACCATCT 401121 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | ||||| ||||| ||||||||||| | || ||| ||| Sbjct 401122 GATAGTATTGAGAACGTCAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCAGACCAA 401181 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || ||||| || ||||||||||||||| | || | ||||||| || Sbjct 401182 CAACGTTTGATATTTGCTGGTAAACAATTGGAAGATGGTCGCACCCTCTCCGATTACAAT 401241 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||||||| |||| |||||||| | |||| || || || Sbjct 401242 ATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGGTAT 401291 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || ||||| || || || || ||||||||||| || ||||| || Sbjct 389841 ATGCAGATCTTCGTAAAGACCTTGACTGGCAAAACCATTACTTTGGAGGTTGAACCATCT 389900 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| |||||||| || | || |||||| Sbjct 389901 GATACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGATCAG 389960 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || || || ||||| || | |||||| | ||| || |||| || ||| Sbjct 389961 CAGCGTTTGATTTTCGCTGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCCGACTACAAC 390020 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||||||||| ||| |||| || | |||| || || || Sbjct 390021 ATCCAGAAAGAATCTACTCTCCACTTGGTCTTGCGTCTACGTGGTGGTAT 390070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| || || || ||||| ||||| ||| ||| | || Sbjct 400150 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACTATTACATTGGAAGTCGAAGCATCT 400209 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | ||||| || || || |||||||| | || ||| ||| Sbjct 400210 GACACGATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCAGACCAA 400269 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || || || || ||||||||||||||| || | | ||||| || Sbjct 400270 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGACGTACCCTCTCTGATTACAAT 400329 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||||||| |||| |||||||| | |||| || || || Sbjct 400330 ATTCAAAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGGTAT 400379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||||||||| || || || ||||||||||| ||| ||| | || Sbjct 401974 ATGCAGATATTTGTAAAAACCTTGACTGGCAAAACCATTACATTGGAAGTCGAAGCATCT 402033 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | ||||| ||||| || ||||| || | || ||| ||| Sbjct 402034 GACACGATTGAGAACGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCTCCAGACCAA 402093 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || || || || ||||||||||||||| | || | | || || ||| Sbjct 402094 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGCACCCTCTCTGACTACAAC 402153 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| || || || |||||||| | |||| || || || Sbjct 402154 ATACAGAAAGAATCCACACTTCATTTGGTATTACGCCTACGTGGCGGTAT 402203 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| ||||| ||||| || || |||||||||||||| ||| || || Sbjct 388926 AACATGCAAATCTTTGTGAAAACTTTGACTGGTAAAACCATTACTTTGGAAGTCGAGCCA 388985 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || ||||| ||||| || || || || | || ||| Sbjct 388986 TCCGACACCATTGAAAATGTCAAGGCTAAAATTCAGGATAAGGAAGGTATTCCACCAGAC 389045 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| | | || ||||| || || |||||||| ||| || | |||| || Sbjct 389046 CAACAACGTTTAATTTTTGCTGGTAAGCAATTGGAGGATGGGCGTACCCTCTCCGACTAC 389105 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| ||||| ||||| ||| |||| || | |||| || || || Sbjct 389106 AACATTCAAAAGGAATCAACTCTCCACTTGGTCTTGCGTCTACGTGGTGGTAT 389158 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || ||||||||||| ||| ||||| || Sbjct 390297 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAAACCATTACATTGGAAGTTGAACCATCT 390356 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||||| ||||||||||| | ||| |||||| Sbjct 390357 GATACTATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAGGGCATTCCCCCAGATCAG 390416 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | || || || || || || ||||||||| | || | | || || ||| Sbjct 390417 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGTCGTACCTTATCTGACTACAAC 390476 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || ||||| || || || |||||||| | |||| || || || Sbjct 390477 ATACAGAAGGAATCCACACTTCATTTGGTATTACGTCTACGTGGTGGTAT 390526 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| || || || || ||||| || ||| || ||||| || Sbjct 399922 ATGCAGATTTTTGTAAAGACTTTGACAGGCAAAACTATCACCTTAGAGGTCGAACCATCT 399981 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | ||| ||||| ||||||||||| | || ||||||| Sbjct 399982 GATAGCATTGAGAACGTTAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCAGATCAA 400041 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || ||||| || ||||||||||||||| ||| | ||||||| ||| Sbjct 400042 CAACGTTTGATATTTGCCGGTAAACAATTGGAAGATGGACGTACTCTTTCCGATTACAAC 400101 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||||| || ||||| || || || |||||||| Sbjct 400102 ATTCAGAAGGAATCCACACTTCATTTGGTATTA 400134 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| || || || ||||| ||||| ||| ||| | || Sbjct 400606 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACAATTACGTTGGAAGTCGAAGCATCT 400665 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || || || |||||||| | || ||| ||| Sbjct 400666 GACACAATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCAGACCAA 400725 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || || || || || |||||||||||| ||| | ||||||| || Sbjct 400726 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGACGTACTCTCTCCGATTACAAT 400785 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||||||| |||| |||||||| | |||| || || || Sbjct 400786 ATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGGTAT 400835 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| || || || ||||| ||||| ||| ||| | || Sbjct 401518 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACAATTACATTGGAAGTCGAAGCATCT 401577 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || || || |||||||| | || ||| ||| Sbjct 401578 GACACAATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCAGACCAA 401637 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || || || || || |||||||||||| ||| | ||||||| || Sbjct 401638 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGACGTACTCTCTCCGATTACAAT 401697 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||||||| |||| |||||||| | |||| || || || Sbjct 401698 ATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGGTAT 401747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425274448258818