Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value SEQ19298 185 4e-42 SEQ24359 178 7e-40 >SEQ19298 Length=518036 Score = 185 bits (204), Expect = 4e-42 Identities = 244/336 (73%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||||||||| |||||||| | ||||||||||||||||| || | ||||||| || Sbjct 235723 CATAAATAAATCAGGAATCCAAAGTGCATAAAATAAATCTCGAGCGCGGTTTTCTTCCTT 235782 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| |||||| || ||||||| || ||||| ||||| || ||||| ||||| | ||| Sbjct 235783 ACCGGTATTCTTCTTAAGATCTATAAATTCAAATATATCAGAATGCCAAGGTTCAAGATA 235842 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || |||||| || |||||| || |||||||| || || |||||||| | ||| Sbjct 235843 AATTGCAAAAGCTCCAGGTCTTTTACCACCACCTTGGTCAACATATCTTGCCACATTATT 235902 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG----TGCTATGAATCT 26168 || || | |||||||| ||||||||| |||||| || |||| || ||| || | Sbjct 235903 AAATACCCTTAACATTGGCACTAATCCATTTGAAACACCATTTGTTCCTGATAT-AAACG 235961 Query 26169 TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAA 26228 || ||| | | |||||| ||| ||| | || || ||||| || ||||||| | Sbjct 235962 TG---CCTTTAGCTCTAATGCAATGAACATTTAATCCAATGCCACCGGCTGATTTTGATA 236018 Query 26229 TAGCTGCACAATCTGAAACTGTATCGAAAATTCCTT 26264 | ||||| | | ||||| | ||||||||||| Sbjct 236019 TCATAGCACATTGTTCAACTGACTTGAAAATTCCTT 236054 Score = 147 bits (162), Expect = 1e-30 Identities = 336/500 (67%), Gaps = 8/500 (2%) Strand=Plus/Plus Query 24684 CTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAA 24743 |||||||||| ||||| |||||||||||||||||||| ||| ||||| ||| || Sbjct 234507 CTGCTGGTTTTGTTCTTAGATAATACATTCCAGTTTTTAATCCAGCTTTCCATGCGTGAA 234566 Query 24744 AATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAG 24803 |||| ||||| || | |||| || |||| | | | | || | |||||| Sbjct 234567 AATGTATTGAAGTCAATTTTCCATAATTTGGCTCCGCCACATGAATATTAAATGATTGAC 234626 Query 24804 CTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATAT 24863 || || |||| | |||||| ||||| | ||| | | || | || || | Sbjct 234627 TCTGATCAATAAAAGCTCCTCTATCAGCAGCCATTCTAATAGTAGACTTAACAGAGATTT 234686 Query 24864 CGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTG 24923 | | | |||| ||| || || | |||| || | | |||||||||||| || Sbjct 234687 CCCACACATTTTTATATAAATCACGTAAATACTTTGGTATTCCTTCAATATTTTGAATTG 234746 Query 24924 ATCCATTTTCTCTCAATAGATTCAATCT--CATAT--TCGGTGTCCAAAGATTAATTTTT 24979 | || | | || ||| |||| ||| | ||| | ||| | ||| || | | || Sbjct 234747 AACCCCTAT-TCAAAAT-GATTAAATTTTTCATCTCATCGCT--CCACAGTTCTAGTTCA 234802 Query 24980 TCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTT 25039 ||||||||| | ||| || | ||| | | |||||| ||||| || || |||||| Sbjct 234803 GTAAGATCTCTTAACAAATGATGATTAACAACTTGAAATTCCCCAGATAACACCCTTCTT 234862 Query 25040 ATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTA 25099 | ||| || || || ||||||||||| |||||||||||||||| ||||||| || Sbjct 234863 GTATATATATTGGATGTATATGGTTCAAAAGATTCATTATTTCCTAATATTTGAGCTGTT 234922 Query 25100 GATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCT 25159 |||||||| |||||| || || | || |||||||| | |||||||| |||| | | Sbjct 234923 GATGCTGTAGGCATTGGAGCAATAAGAAGAGAATTTCTAACACCATATTGTGCAATTTTT 234982 Query 25160 TGTTTTAATTTATCCCAATC 25179 |||||||| ||||||| Sbjct 234983 CCTTTTAATTCTGCCCAATC 235002 >SEQ24359 Length=906208 Score = 178 bits (196), Expect = 7e-40 Identities = 204/272 (75%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 25887 TATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTG 25946 |||| ||||| | || | ||||| |||| ||||| | |||||||||||| | Sbjct 359178 TATTAGGACACATTAGAGACCAATTTTCATTAGCTTCAACACGTTTCATAAATAAATCAG 359237 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCC-GTGATTCTTT 26005 ||||||| | ||||||||||||||||| |||| |||||||||| || ||| || ||| Sbjct 359238 GAATCCAGAGTGCATAAAATAAATCTCGAGCTCGGTTTTCTTCTTTACCAGTG-TTTTTT 359296 Query 26006 TTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTA 26065 || |||||||| || ||||| ||||| | ||||| ||||||| || || |||||| Sbjct 359297 TTAAGATCTAAAAAGTCAAATATATCGGGATGCCAAGGTTCTAGGTAAATGGCAAAAGCT 359356 Query 26066 CCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAAC 26125 || ||||| || || ||||| || || |||||||| | || |||||||| ||| Sbjct 359357 CCAGGCCTTTTACCACCGCCTTGGTCAACATATCTTGCCACATTGTTAAAAACTTTTAAC 359416 Query 26126 ATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 ||||| ||||||||| |||||| || ||||| Sbjct 359417 ATTGGTACTAATCCATTTGAAACACCATTTGT 359448 Score = 134 bits (148), Expect = 7e-27 Identities = 326/489 (67%), Gaps = 6/489 (1%) Strand=Plus/Plus Query 24684 CTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAA 24743 |||||||||| ||||| ||||| |||||||||||||| ||| ||||| |||||| Sbjct 358008 CTGCTGGTTTTGTTCTTAGATAGTACATTCCAGTTTTTAATCCAGCTTTCCATGCGTAAA 358067 Query 24744 AATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAG 24803 |||| ||||| |||| ||||||| |||| | | | | | | || | || ||| Sbjct 358068 AATGTATTGAAGTTAATTTTGCATAATTTGGCTCTGCCACATAAATATTGAATGACTGAC 358127 Query 24804 CTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATAT 24863 ||| || |||| || ||||| || | || || | || | | || | Sbjct 358128 TTTGATCAATAAAAGCACCCCTGTCTGCTGCCATTCTTATAATAGCCTTAACAGGAATTT 358187 Query 24864 CGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTG 24923 | | | ||||| ||| || || |||| || | |||||||||||| | Sbjct 358188 CCCATACAGTTTTATATACGTCACGTAAAAACTTTGGTATTTCTTCAATATTTTGAATCG 358247 Query 24924 ATCCATTTTCTCTCAATAG-ATTCAATCTCATA-TTCGGTGT-CCAAAGATTAATTTTTT 24980 |||| | ||||||| ||| ||| | || |||| || ||| || | | || Sbjct 358248 ATCCTCGAT---TCAATAGTATTGAATTTTTTAATTCGTCGTTCCATAGTTCCAGTTCAG 358304 Query 24981 CAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTA 25040 ||||||| | | || || ||||| | | |||||| ||||| || ||||||||| Sbjct 358305 TAAGATCTTTTAATAAATGATTATTAACAACTTGAAATTCACCAGATAACACTCTTCTTG 358364 Query 25041 TTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAG 25100 | ||| || || || |||| |||||| |||||||||||||||| ||||||| || | Sbjct 358365 TATATATATTCGATGTATATGGCTCAAAAGATTCATTATTTCCTAATATTTGAGCTGTTG 358424 Query 25101 ATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTT 25160 ||||||| |||||| || || | || |||||||| | |||||||| |||| | Sbjct 358425 ATGCTGTAGGCATTGGAGCGATAAGAAGAGAATTTCTAACACCATATTGTGCAATTTTGC 358484 Query 25161 GTTTTAATT 25169 |||||||| Sbjct 358485 TTTTTAATT 358493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252962463957650