Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value SEQ18371 122 1e-22 seq4733 109 6e-19 >SEQ18371 Length=67641 Score = 122 bits (134), Expect = 1e-22 Identities = 364/541 (67%), Gaps = 28/541 (5%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||| || ||||| | |||||||| ||||| |||||||| || ||||| || ||||| Sbjct 53043 ACACCTATGGGACCCATACCAGGACCACCACCACCATGTGGTATGCAGAAAGTTTTATGC 52984 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| | ||| | ||||| || || || | ||| | || || || |||||| Sbjct 52983 AAATTCAAGTGAGAAACATCGCTGCCGTAATCGCCGGGTCTGCAAAGTCCAACTTGTGCA 52924 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCAT-----TGTCATGAACGATCTTAC 138357 || | || |||||||| | ||| || || || |||| ||| || || ||| | Sbjct 52923 TTCATGTTAGCACCATCTAAATACACTTGTCCTCCATGACGATGT-ATTAA--ATCACAA 52867 Query 138358 ATATCTGTCTGATGTTTGTTTCAAATACACC-ATGAGTCGATGGATATGTAATCATAATA 138416 ||||||| | |||| | |||| || || ||| || || |||||||||||||||| Sbjct 52866 ATATCTGCAACA-GTTTCCT-CAAAAACGCCCATG-GTTGAGGGATATGTAATCATAAGG 52810 Query 138417 CATGAGAGTTCAAATGTATTCATGAT-TGCTTTCTTCTC---TAGATCTTTGATGTCTAT 138472 || || ||||| | | |||||| | || ||| || || || | || || || Sbjct 52809 CAAGAAAGTTC---TCT-TTCATGTTCAGCGGCCTTATCACGTAAATGACTCATATCAAT 52754 Query 138473 GTTGCCATC--ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTA 138530 | | || || || || | || | | | | |||||||| || ||||| ||| | Sbjct 52753 GCTACCGTCAGATAAT-ATACGT-ATGGGTTCCACTTTCATACCAGCCATTTGTGCGGAA 52696 Query 138531 GCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCC 138589 |||||||| || |||||||| || ||| || ||||||| ||| | | | | || | Sbjct 52695 GCAGGATTTGTGCCATGTGCCGATATTGGAATGAGACATATATTGCGATGACCTTCATTA 52636 Query 138590 TGATCCTTGATGATATGCT-TGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTG 138648 | | || |||||| ||| | || || | || || || ||||| || | ||||| Sbjct 52635 CGGT-GTTCATGATA-GCTACGAATAGCGCGTAAACCAGCGTATTCACCTTGAGCTCCTG 52578 Query 138649 CGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGT 138708 |||||||| || ||||| ||| |||| || || |||||||| ||||| ||| | Sbjct 52577 AATTAGGTTGGAAGGATATTCTATCGTAACCAGTAATTTCACATAAATCTTTCTCTAATT 52518 Query 138709 C 138709 | Sbjct 52517 C 52517 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139246 TTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTG 139305 ||||||| || | ||||| || | ||||||||| ||||| | | | |||||||| | Sbjct 51950 TTGCTATGGCTTTAAGTCCTTCAGGGCCATGATATATAGCATACATTGCTGACATATTAG 51891 Query 139306 CGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCT 139365 | || ||||||||||| || || || |||||||| || || || | | || || |||| Sbjct 51890 CTAGGAGTGCTTGTGCAGTACAAATATTACTGGTCGCCTTATCACGACGTATGTGTTGCT 51831 Query 139366 CTCTAGTTTGTAGTGCTAATCTGTATGCA 139394 | | || |||| ||||| | ||| ||| Sbjct 51830 CACGTGTCTGTAAAGCTAAACGGTAAGCA 51802 >seq4733 Length=8201 Score = 109 bits (120), Expect = 6e-19 Identities = 360/541 (67%), Gaps = 28/541 (5%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||| || ||||| | |||||||| ||||| |||||||| || ||||| || ||||| Sbjct 7056 ACACCTATGGGACCCATACCAGGACCACCACCACCATGTGGTATGCAGAAAGTTTTATGC 6997 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| | ||| | ||||| || || || | ||| | || || || |||||| Sbjct 6996 AAATTCAAGTGAGAAACATCGCTGCCGTAATCGCCGGGTCTGCAAAGTCCAACTTGTGCA 6937 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCAT-----TGTCATGAACGATCTTAC 138357 || | || |||||||| | ||| || || || |||| ||| || || ||| | Sbjct 6936 TTCATGTTAGCACCATCTAAATACACTTGTCCTCCATGACGATGT-ATTAA--ATCACAA 6880 Query 138358 ATATCTGTCTGATGTTTGTTTCAAATACACC-ATGAGTCGATGGATATGTAATCATAATA 138416 ||||||| | |||| | |||| || || ||| || || || ||||||||||||| Sbjct 6879 ATATCTGCAACA-GTTTCCT-CAAAAACGCCCATG-GTTGAGGGGTATGTAATCATAAGG 6823 Query 138417 CATGAGAGTTCAAATGTATTCATGAT----TGCTTTCTTCTCTAGATCTTTGATGTCTAT 138472 || || ||||| | | |||||| | ||||| | || || | || || || Sbjct 6822 CAAGAAAGTTC---TCT-TTCATGTTCAGCGGCTTTATCACGTAAATGACTCATATCAAT 6767 Query 138473 GTTGCCATC--ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTA 138530 | | || || || || | || | | | | |||||||| || ||||| ||| | Sbjct 6766 GCTACCGTCAGATAAT-ATACGT-ATGGGTTCCACTTTCATACCAGCCATTTGTGCGGAA 6709 Query 138531 GCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCC 138589 |||||||| || ||||| || || ||| || ||||||| ||| | | | | || | Sbjct 6708 GCAGGATTTGTGCCATGCGCCGATATTGGAATGAGACATATATTGCGATGACCTTCATTA 6649 Query 138590 TGATCCTTGATGATATGCT-TGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTG 138648 | | | | |||||| ||| | || || | || || || ||||| || | ||||| Sbjct 6648 CGGTGC-TCATGATA-GCTACGAATAGCGCGTAAACCAGCGTATTCACCTTGAGCTCCTG 6591 Query 138649 CGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGT 138708 |||||||| || ||||| || |||| || || |||||||| ||||| ||| | Sbjct 6590 AATTAGGTTGGAAGGATATTCTTTCGTAACCAGTAATTTCACATAAATCTTTCTCTAATT 6531 Query 138709 C 138709 | Sbjct 6530 C 6530 Score = 86.0 bits (94), Expect = 7e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 139246 TTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTG 139305 ||||||| || | ||||| || | ||||||||| ||||| | | | |||||||| | Sbjct 5963 TTGCTATGGCTTTAAGTCCTTCAGGGCCATGATATATAGCATACATTGCTGACATATTAG 5904 Query 139306 CGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCT 139365 | || ||||||||||| || || || |||||||| || || || | | || || |||| Sbjct 5903 CTAGGAGTGCTTGTGCAGTACAAATATTACTGGTCGCCTTATCACGACGTATGTGTTGCT 5844 Query 139366 CTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTC 139405 | | || |||| ||||| | ||| ||| || ||| || Sbjct 5843 CACGTGTCTGTAAAGCTAAACGGTAAGCATCATGGCCATC 5804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578816435277840