Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
SEQ18371 122 1e-22
seq4733 109 6e-19
>SEQ18371
Length=67641
Score = 122 bits (134), Expect = 1e-22
Identities = 364/541 (67%), Gaps = 28/541 (5%)
Strand=Plus/Minus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
||||| || ||||| | |||||||| ||||| |||||||| || ||||| || |||||
Sbjct 53043 ACACCTATGGGACCCATACCAGGACCACCACCACCATGTGGTATGCAGAAAGTTTTATGC 52984
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302
||||| | ||| | ||||| || || || | ||| | || || || ||||||
Sbjct 52983 AAATTCAAGTGAGAAACATCGCTGCCGTAATCGCCGGGTCTGCAAAGTCCAACTTGTGCA 52924
Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCAT-----TGTCATGAACGATCTTAC 138357
|| | || |||||||| | ||| || || || |||| ||| || || ||| |
Sbjct 52923 TTCATGTTAGCACCATCTAAATACACTTGTCCTCCATGACGATGT-ATTAA--ATCACAA 52867
Query 138358 ATATCTGTCTGATGTTTGTTTCAAATACACC-ATGAGTCGATGGATATGTAATCATAATA 138416
||||||| | |||| | |||| || || ||| || || ||||||||||||||||
Sbjct 52866 ATATCTGCAACA-GTTTCCT-CAAAAACGCCCATG-GTTGAGGGATATGTAATCATAAGG 52810
Query 138417 CATGAGAGTTCAAATGTATTCATGAT-TGCTTTCTTCTC---TAGATCTTTGATGTCTAT 138472
|| || ||||| | | |||||| | || ||| || || || | || || ||
Sbjct 52809 CAAGAAAGTTC---TCT-TTCATGTTCAGCGGCCTTATCACGTAAATGACTCATATCAAT 52754
Query 138473 GTTGCCATC--ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTA 138530
| | || || || || | || | | | | |||||||| || ||||| ||| |
Sbjct 52753 GCTACCGTCAGATAAT-ATACGT-ATGGGTTCCACTTTCATACCAGCCATTTGTGCGGAA 52696
Query 138531 GCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCC 138589
|||||||| || |||||||| || ||| || ||||||| ||| | | | | || |
Sbjct 52695 GCAGGATTTGTGCCATGTGCCGATATTGGAATGAGACATATATTGCGATGACCTTCATTA 52636
Query 138590 TGATCCTTGATGATATGCT-TGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTG 138648
| | || |||||| ||| | || || | || || || ||||| || | |||||
Sbjct 52635 CGGT-GTTCATGATA-GCTACGAATAGCGCGTAAACCAGCGTATTCACCTTGAGCTCCTG 52578
Query 138649 CGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGT 138708
|||||||| || ||||| ||| |||| || || |||||||| ||||| ||| |
Sbjct 52577 AATTAGGTTGGAAGGATATTCTATCGTAACCAGTAATTTCACATAAATCTTTCTCTAATT 52518
Query 138709 C 138709
|
Sbjct 52517 C 52517
Score = 84.2 bits (92), Expect = 3e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 139246 TTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTG 139305
||||||| || | ||||| || | ||||||||| ||||| | | | |||||||| |
Sbjct 51950 TTGCTATGGCTTTAAGTCCTTCAGGGCCATGATATATAGCATACATTGCTGACATATTAG 51891
Query 139306 CGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCT 139365
| || ||||||||||| || || || |||||||| || || || | | || || ||||
Sbjct 51890 CTAGGAGTGCTTGTGCAGTACAAATATTACTGGTCGCCTTATCACGACGTATGTGTTGCT 51831
Query 139366 CTCTAGTTTGTAGTGCTAATCTGTATGCA 139394
| | || |||| ||||| | ||| |||
Sbjct 51830 CACGTGTCTGTAAAGCTAAACGGTAAGCA 51802
>seq4733
Length=8201
Score = 109 bits (120), Expect = 6e-19
Identities = 360/541 (67%), Gaps = 28/541 (5%)
Strand=Plus/Minus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
||||| || ||||| | |||||||| ||||| |||||||| || ||||| || |||||
Sbjct 7056 ACACCTATGGGACCCATACCAGGACCACCACCACCATGTGGTATGCAGAAAGTTTTATGC 6997
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302
||||| | ||| | ||||| || || || | ||| | || || || ||||||
Sbjct 6996 AAATTCAAGTGAGAAACATCGCTGCCGTAATCGCCGGGTCTGCAAAGTCCAACTTGTGCA 6937
Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCAT-----TGTCATGAACGATCTTAC 138357
|| | || |||||||| | ||| || || || |||| ||| || || ||| |
Sbjct 6936 TTCATGTTAGCACCATCTAAATACACTTGTCCTCCATGACGATGT-ATTAA--ATCACAA 6880
Query 138358 ATATCTGTCTGATGTTTGTTTCAAATACACC-ATGAGTCGATGGATATGTAATCATAATA 138416
||||||| | |||| | |||| || || ||| || || || |||||||||||||
Sbjct 6879 ATATCTGCAACA-GTTTCCT-CAAAAACGCCCATG-GTTGAGGGGTATGTAATCATAAGG 6823
Query 138417 CATGAGAGTTCAAATGTATTCATGAT----TGCTTTCTTCTCTAGATCTTTGATGTCTAT 138472
|| || ||||| | | |||||| | ||||| | || || | || || ||
Sbjct 6822 CAAGAAAGTTC---TCT-TTCATGTTCAGCGGCTTTATCACGTAAATGACTCATATCAAT 6767
Query 138473 GTTGCCATC--ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTA 138530
| | || || || || | || | | | | |||||||| || ||||| ||| |
Sbjct 6766 GCTACCGTCAGATAAT-ATACGT-ATGGGTTCCACTTTCATACCAGCCATTTGTGCGGAA 6709
Query 138531 GCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCC 138589
|||||||| || ||||| || || ||| || ||||||| ||| | | | | || |
Sbjct 6708 GCAGGATTTGTGCCATGCGCCGATATTGGAATGAGACATATATTGCGATGACCTTCATTA 6649
Query 138590 TGATCCTTGATGATATGCT-TGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTG 138648
| | | | |||||| ||| | || || | || || || ||||| || | |||||
Sbjct 6648 CGGTGC-TCATGATA-GCTACGAATAGCGCGTAAACCAGCGTATTCACCTTGAGCTCCTG 6591
Query 138649 CGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGT 138708
|||||||| || ||||| || |||| || || |||||||| ||||| ||| |
Sbjct 6590 AATTAGGTTGGAAGGATATTCTTTCGTAACCAGTAATTTCACATAAATCTTTCTCTAATT 6531
Query 138709 C 138709
|
Sbjct 6530 C 6530
Score = 86.0 bits (94), Expect = 7e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 139246 TTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTG 139305
||||||| || | ||||| || | ||||||||| ||||| | | | |||||||| |
Sbjct 5963 TTGCTATGGCTTTAAGTCCTTCAGGGCCATGATATATAGCATACATTGCTGACATATTAG 5904
Query 139306 CGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCT 139365
| || ||||||||||| || || || |||||||| || || || | | || || ||||
Sbjct 5903 CTAGGAGTGCTTGTGCAGTACAAATATTACTGGTCGCCTTATCACGACGTATGTGTTGCT 5844
Query 139366 CTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTC 139405
| | || |||| ||||| | ||| ||| || ||| ||
Sbjct 5843 CACGTGTCTGTAAAGCTAAACGGTAAGCATCATGGCCATC 5804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578816435277840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |