Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value SEQ19298 147 6e-30 SEQ23671 129 2e-24 SEQ24131 125 2e-23 seq1412 125 2e-23 seq7770 123 7e-23 seq5145 123 7e-23 SEQ19926 102 2e-16 seq3893 89.7 2e-12 >SEQ19298 Length=518036 Score = 147 bits (162), Expect = 6e-30 Identities = 720/1127 (64%), Gaps = 23/1127 (2%) Strand=Plus/Plus Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC 155465 || || || ||||| || |||||||||| || | |||||| | || | | ||| | Sbjct 235211 TCTGCAAATCCCTGCACACCAATACCGATAGGTCTATGCCTTAAGTTTGACTTTTTTG-C 235269 Query 155466 TTCTTGTTT-GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTT 155524 ||| | |||||| | || || ||||| || |||||||||||| || | || || Sbjct 235270 TTCGGGCAACGGGTAATAGTTTACGTCAATTATTTTATTTAAATTTCTAGTTACGACTTT 235329 Query 155525 GGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAG 155584 | ||| | | | ||| | ||||| | |||||||| | | ||||||||| || Sbjct 235330 GCTTATATATTTAAGCTTCTGAAAGTCATAAGTTTTATCACTAGTCACAAACATATTTAG 235389 Query 155585 ACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCT 155643 | ||||| |||| || || || ||| | || | || || | ||| || || || | Sbjct 235390 TGCTATAGAAGCCAAGTTGCAAACTGCAATTTCATCTGGCG-CAGAGTACTCAACGATTT 235448 Query 155644 CACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTAC 155703 | ||| | ||| | |||||| || |||||||| | || ||| ||| | || | Sbjct 235449 CTGTGCATAAATTACTGCACTTGATTGTTCCTAAATTTTGTTGATTACTTTTGCGATTGC 235508 Query 155704 AAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTA 155763 | | |||||| ||||| || || || ||||| || || | ||||| || | || | Sbjct 235509 ATGAATCCTTATATAGCATATAAGGAGTTCCAGTTTCAACTTGTGCTTCAATTATAGCAA 235568 Query 155764 GCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTT--CAT 155821 ||| || | | || |||| | | || ||| |||||| |||||||| || Sbjct 235569 ACCAAAGAGCTTGTGCTTTAACTACTCTATTTGCTCTACCTTCCTTTTCATATTTTGTAT 235628 Query 155822 ATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCA 155881 ||| | | ||| | || ||||| || ||| || ||||| || || | ||||| Sbjct 235629 ATAAATC-TTC-AAATTCTTCACCCCAAACCTCATGCAAGCCAGGACATTTGTTTGGGCA 235686 Query 155882 AAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAAT 155941 | || |||||| ||| |||| | ||||| | |||||||| |||| ||||| Sbjct 235687 CATAAGTGACCAATTTTCATTAGCTTCAACACGTTTCATAAATAAATCAGGAATCCAAAG 235746 Query 155942 AGCATAGAAAAGGTCCCTTGC---CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTC 155998 ||||| || | || | || ||| || || | ||| ||||||| || || Sbjct 235747 TGCATAAAATAAATCTCGAGCGCGGTTT---TCTTCCTTACCGGTATTCTTCTTAAGATC 235803 Query 155999 TAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCT 156058 || ||||| ||||||| ||| || || ||||| || |||||| ||| || Sbjct 235804 TATAAATTCAAATATATCAGAATGCCAAGGTTCAAGATAAATTGCAAAAGCTCCAGGTCT 235863 Query 156059 CTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG-AA 156114 || ||||| || || ||||| | || ||||| || || | || ||| || | Sbjct 235864 TTTACCACCACCTTGGTCAACATATCTTGCCACATTATTAAATACCCTTAACATTGGCAC 235923 Query 156115 TAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTAT 156174 |||| ||||| ||| ||||| ||||| ||| || || | | || || Sbjct 235924 TAAT-CCATTTGAAACACCATTTGTTCCTGATATAAACGTGCCTTTAGCTCTAATGCAAT 235982 Query 156175 GAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234 ||| || || |||||| ||||| | |||| || || ||| |||| | || | | Sbjct 235983 GAACATTTAATCCAATGCCACCGGCTGATTTTGATATCATAGCACATTGTTCAACTGACT 236042 Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAG 156294 ||||||| |||||||| || ||| | |||| | || || | ||||| | ||| | Sbjct 236043 TGAAAATTCCTTCAATTGAGTCAGCAACCATAGTAAGCAGGAAACACGATGAAAGTTGTG 236102 Query 156295 GTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACA 156354 | | | || ||||| ||| || || || | ||||| |||| ||| | ||| | Sbjct 236103 GCCTTCTAGTGGCAGCGGAGAACAGAGTTGGCGAGGCATGCGTAAAGTACCGTTCAGAGA 236162 Query 156355 TATAATCGTATGTCTC-CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACC 156413 | || || || || || || | || | || | ||| || |||| || ||| Sbjct 236163 GAAGATTATAAGTTTCAATTGCTCCT-TCTATATCATTCCCATGTATACCAATTGAGCAT 236221 Query 156414 CTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCG 156473 |||||| ||| ||||| || | || |||| |||| || ||||| || | Sbjct 236222 CTCATCAACAGGTGCTGGGGTCTTTCCACAACTTTCCCATTTATCTTGAGAAGATACGAT 236281 Query 156474 CGTTCCAGAGTTTTAAACCCGAAATAATCA-AACAGAAAATCACGGT 156519 ||||| | |||||||| || || |||| | ||| | || ||||||| Sbjct 236282 CGTTCTAACGTTTTAAATCCAAAGTAATTATAACCG-AAGTCACGGT 236327 >SEQ23671 Length=176591 Score = 129 bits (142), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 |||| |||| |||||||||||| ||||||||||| | |||| | ||| || ||||| Sbjct 145065 TGAAAAAATGGTACATTTGCTTCTCCTGCTACTGCACGTGCCAACAATGTTTTTCCTGTA 145124 Query 289216 CCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT--ATATT 289273 ||||| || || | | || |||||| ||||||| ||| | ||| ||| || | ||| Sbjct 145125 CCAGGAGGACCAACAAGTAAAACTCCTTTTGGTAATTTACCACCA--AGATTTGAAAATT 145182 Query 289274 TCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATC 289333 | ||||| | ||||| ||||| || | ||| | |||||| | ||| || ||||| |||| Sbjct 145183 TTTCAGGATTTTTTAAGAATTCCACCACTTCTTTAAGTTCTTGTTTGGCTTCATCGCATC 145242 Query 289334 CTGCTACATCAGCAAAAGT 289352 || ||||||| |||| || Sbjct 145243 CTTTTACATCATCAAATGT 145261 >SEQ24131 Length=2407932 Score = 125 bits (138), Expect = 2e-23 Identities = 331/500 (66%), Gaps = 18/500 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||||| ||| ||| ||| || | |||||| | | ||||| ||| Sbjct 549545 CTATCAAATCGACCAGGTCGAAGTAAAGCTTTATCCAGTATATCTACACGATTTGTAGCT 549604 Query 288910 GCCAATACAACAATAGATTCGGTTTGCT--TAAATCCATCCATACTTGTTAAAATTTGAT 288967 |||| || || || ||| | | || | |||| |||||||| || | |||| Sbjct 549605 GCCAGCACTAC--TACATTTGTTGTGGTATTAAACCCATCCATCTCAACCAACAACTGAT 549662 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAAT---CGCTCCttt 289024 ||||||| | ||| |||| || ||| | || ||| | ||| | || Sbjct 549663 TAAGTGTATTTTCTTGTTCAGAATG---ACCAC------CAAACGATTTTCCGCCACGTT 549713 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 || ||||||||||||| ||||| ||||| || | | || || | || || || || | Sbjct 549714 TTCTACCAACAGCATCTATTTCATCAATAAACAATATGCAAGGTGCATGTTTTCGTGCCA 549773 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 | ||||| | || | || || || | |||| ||||||| ||||||| | ||||||| Sbjct 549774 TCGCAAACATATCCCGCACTCGAGAAGGACCAACACCAACAAACATTTCCAAGAATTCAG 549833 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | || || || || | |||||||||||| || ||| ||| | || | | || Sbjct 549834 AACCAGAAACGGTTATAAAAGGTACATTTGCTTCACCAGCTGTTGCTTTAGCTAACATTG 549893 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | || ||||| ||||||||||| | | | || || || | ||| || || || Sbjct 549894 TTTTTCCTGTACCAGGTGGTCCAGTAAGCATTGCGCCTTTCGGAATTTTCGCACC-TAAG 549952 Query 289265 AC-TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | |||||| || || | ||||| || | ||||| ||| | |||| ||||||| Sbjct 549953 TCAATATATTGCTGTGGATTTTTTAAGAAGTTTACAAACTCCATGATTTCAATTTTTGCC 550012 Query 289324 TCATCACATCCTGCTACATC 289343 || || || || |||||||| Sbjct 550013 TCTTCGCAACCAGCTACATC 550032 >seq1412 Length=297351 Score = 125 bits (138), Expect = 2e-23 Identities = 215/309 (70%), Gaps = 6/309 (2%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| || ||||| |||||| ||| || |||||||| Sbjct 20606 ATTTCTAACAGTGCCATCATAATTAACCATAACAGACTCCATAGCCTTTATCAAACGACG 20547 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| ||||||||| || ||||||||||||||||| || ||||| |||||||||| Sbjct 20546 CTGAATGTAACCAGTTTCAGCAGTTTTTACAGCTGTATCGATAAGACCTTCACGACCACC 20487 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| || ||| | | || ||| || || ||| | | || | || || || Sbjct 20486 CATAGCGTGAAAGTAAAATTCGGATGGTGTCAGACCGGCAAGATATGAATTTTCTACAAA 20427 Query 302718 ACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC 302774 || | | || || || ||||||| || | || ||||||| || | || Sbjct 20426 CCCTCTAGATTCAGGACCGTAATCGTC---TTTAATGAAATGTGGCAAAGTGCGCTTGCG 20370 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | ||||| || ||||| || || || ||||| ||||| |||| ||| | ||| | || Sbjct 20369 AAAACCGTACGGAATACGTTTACCTTCTACGTTTTGCTGACCCACGCAAGCAATAACTTG 20310 Query 302835 CGAAATATT 302843 ||||| || Sbjct 20309 AGAAATGTT 20301 >seq7770 Length=38386 Score = 123 bits (136), Expect = 7e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 |||| |||| |||||||||||| ||||||||||| | |||| | ||| || ||||| Sbjct 2855 TGAAAAAATGGTACATTTGCTTCTCCTGCTACTGCACGTGCCAACAATGTTTTTCCTGTA 2914 Query 289216 CCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT--ATATT 289273 ||||| || || | | || |||||| || |||| ||| | ||| ||| || | ||| Sbjct 2915 CCAGGAGGACCAACAAGTAAAACTCCTTTAGGTAATTTACCACCA--AGATTTGAAAATT 2972 Query 289274 TCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATC 289333 | ||||| | ||||| ||||| || | ||| | |||||| | ||| || ||||| |||| Sbjct 2973 TTTCAGGATTTTTTAAGAATTCCACCACTTCTTTAAGTTCTTGTTTGGCTTCATCGCATC 3032 Query 289334 CTGCTACATCAGCAAAAGT 289352 || ||||||| |||| || Sbjct 3033 CTTTTACATCATCAAATGT 3051 >seq5145 Length=11382 Score = 123 bits (136), Expect = 7e-23 Identities = 211/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| || ||||| |||||| ||| || |||||||| Sbjct 1051 ATTTCTAACAGTGCCATCATAATTAACCATAACAGACTCCATAGCCTTTATCAAACGACG 992 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||||||||||||| || ||||| ||||||||||| || ||||| |||||||||| Sbjct 991 CTGAATATAACCAGTTTCAGCAGTTTTGACAGCTGTATCGATAAGACCTTCACGACCACC 932 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| || ||| | | || ||| || || ||| | | || | || || || Sbjct 931 CATAGCGTGAAAGTAGAATTCGGATGGTGTCAGACCGGCAAGATATGAATTTTCTACAAA 872 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 || | | || || || ||| || | || ||||||| || | || | | Sbjct 871 CCCTCTAGATTCAGGACCATAATCGTCTTTAATGAAATGTGGCAAAGTGCGCTTGCGAAA 812 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||||| || ||||| || || || ||||| ||||| |||| ||| | ||| | || || Sbjct 811 ACCGTACGGAATACGTTTACCTTCTACGTTTTGCTGACCCACGCAAGCAATAACTTGAGA 752 Query 302838 AATATT 302843 ||| || Sbjct 751 AATGTT 746 >SEQ19926 Length=251428 Score = 102 bits (112), Expect = 2e-16 Identities = 251/375 (67%), Gaps = 13/375 (3%) Strand=Plus/Plus Query 381187 ATTATGACTGCGTGGAATCCTTGCCAGATTAATGATATGGCTTTACCACCTTGCCATATT 381246 || ||| |||| |||||||| || | || | | ||||| ||||||| |||||| | Sbjct 64047 ATAATGTCTGCATGGAATCCATGTGATATACCTAAAATGGCACTACCACCATGCCATTGT 64106 Query 381247 TTATGCCAGTTCAATGTTTCG--GCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTA 381304 ||| ||||| ||||| ||| || ||||| |||| |||||||||| | Sbjct 64107 TTAGCTCAGTT-----TTTCGTAGCTAACGATGAGTTATCTTGTCAACTATATCAGCGCA 64161 Query 381305 GCGGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTACTCGTT 381364 | | |||| | ||||| ||||||||||| |||||||| || ||| || | ||||| | | Sbjct 64162 GTGCTGATATGGGTCTTGGTGTTCCATTTAATATTGCCTCTTATGCTTTACTTACGCATA 64221 Query 381365 TAATTGCTCATCACACTGGACTAATTGCGGGTGATTTTGTTTATTATCTCGGTAATACTC 381424 | ||||| ||| || ||| ||| | ||| |||||| | | | ||| |||| | Sbjct 64222 TGATTGCGCATGTTACGGGATTAAAGCCTGGTTGTTTTGTACACACTATGGGTGATACGC 64281 Query 381425 ATATATACGACGACCATATTGAGAATTTAAAAGTTCAA--AAAACCAGGACACCATATGC 381482 || |||| | | ||| | || |||||| | ||| |||| | | ||| || Sbjct 64282 ATGTATATAAGAATCATGTCGAACCTTTAAAGGAGCAACTTAAAC--GTATTCCAAGAGC 64339 Query 381483 GTTTCCAACGTTAGATATACTAAAT-ACTTACGATAATATTGAAGATTACACGGTTGATG 381541 ||||||| || |||| | | | || | | ||||||||||| || |||||| Sbjct 64340 TTTTCCAAAATTGCTTATAAAACGTGAAGTA-AAAAGTATTGAAGATTTTACCTTTGATG 64398 Query 381542 ATTTTAAACTAAATG 381556 ||||| || ||| || Sbjct 64399 ATTTTGAAATAATTG 64413 >seq3893 Length=76654 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | || ||||| |||||| |||||||||||||| | ||| | ||| || ||| Sbjct 69430 GCACCATAAGAAATCAAACAATCCCGTTCCATTTCACCCAAACGTAAACCGCCTTCAC-- 69373 Query 233333 GAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||| | ||| || | ||||||||||| |||| ||||||| ||||||| || Sbjct 69372 GACTGCGACCTTGTGTGGGTTGACGAGTTAGCACAGCCTTTGGACCACGAGCACGTGCAT 69313 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 |||||||| | |||||||| |||| | || |||||| Sbjct 69312 GCATTTTATCCTGTACCATATGTTTCAATTTCTGATAATA 69273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471343480636854