Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value SEQ20258 93.3 8e-14 seq3264 93.3 8e-14 SEQ20260 89.7 9e-13 >SEQ20258 Length=134083 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 183023 TATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAA 183082 ||||||| | |||| |||| | || | ||||| |||||||| ||||| |||||| Sbjct 132288 TATGGAACTCTGCACAGTTACAATTAATCAATGAAGGCAAAATGCACGGTTTTCTACGAA 132347 Query 183083 TGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAA 183126 |||| ||||||||||| ||||||||||||||| |||||| ||| Sbjct 132348 TGTATTGGGCTAAAAAAATACTTGAATGGACAGAAACTCCTGAA 132391 >seq3264 Length=23417 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 183023 TATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAA 183082 ||||||| | |||| |||| | || | ||||| |||||||| ||||| |||||| Sbjct 18718 TATGGAACTCTGCACAGTTACAATTAATCAATGAAGGCAAAATGCACGGTTTTCTACGAA 18659 Query 183083 TGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAA 183126 |||| ||||||||||| ||||||||||||||| |||||| ||| Sbjct 18658 TGTATTGGGCTAAAAAAATACTTGAATGGACAGAAACTCCTGAA 18615 >SEQ20260 Length=19963 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 183023 TATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAA 183082 ||||||| | |||| |||| | || | ||||| |||||||| ||||| |||| | Sbjct 2130 TATGGAACTCTGCACAGTTACAATTAATCAATGAAGGCAAAATGCACGGTTTTCTACGGA 2189 Query 183083 TGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAA 183126 |||| ||||||||||| ||||||||||||||| |||||| ||| Sbjct 2190 TGTATTGGGCTAAAAAAATACTTGAATGGACAGAAACTCCTGAA 2233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903127280445120