Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value SEQ18352 98.7 1e-15 >SEQ18352 Length=541547 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| || ||||| ||| || || ||| | || || ||||||||||| Sbjct 390037 GTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTACGACCA-TCTTCAAGCTGCTTGCC 389979 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | |||||||| || || || |||||||| ||||| ||| || ||| Sbjct 389978 AGCGAAAATCAAACGCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTT 389919 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | || || || || | || | ||||||||| |||| || Sbjct 389918 AACATTTTCAATTGTATCAGATGGTTCAACCTCCAAAGTAATGGTTTTGCCAGTCAAGGT 389859 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||| |||||||| Sbjct 389858 CTTTACGAAGATCTGCAT 389841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||||||||| ||||| || | ||| ||| | || || | Sbjct 402179 AAATGAAGTGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGGGTGCGACCA-TCTTCCAA 402121 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| |||| | || || ||||| ||||| |||||||| || || ||| Sbjct 402120 TTGTTTACCAGCGAAAATCAAACGTTGTTGGTCTGGAGGAATGCCTTCTTTATC-TTGAA 402062 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||||| | ||||| |||||| | | || || || | || | |||||||| Sbjct 402061 TTTTGGCCTTGACGTTCTCAATCGTGTCAGATGCTTCGACTTCCAATGTAATGGTTTTGC 402002 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| |||||||| || |||||||| Sbjct 402001 CAGTCAAGGTTTTTACAAATATCTGCAT 401974 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| ||| |||| | ||||| || || ||||| || ||||| ||| Sbjct 389767 TCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCTTTG 389708 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | |||| ||||| | ||||| || || | || | | Sbjct 389707 TCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCGACCTCTAAAGTAATG 389648 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| |||| ||| || ||||| || ||||| Sbjct 389647 GTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 389613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| ||| |||| | ||||| || || ||||| || ||||| ||| Sbjct 391135 TCTTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCTTTG 391076 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | |||| ||||| | ||||| || || | || | | Sbjct 391075 TCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCGACCTCTAAAGTAATG 391016 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| |||| ||| || ||||| || ||||| Sbjct 391015 GTTTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 390981 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| ||||| ||||| | ||| ||| | ||||| | Sbjct 402407 AAATGGAGTGTAGACTCCTTCTGAATATTATAATCAGATAAAGTGCGACCA-TCCTCCAA 402349 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| || ||||||| || || || || ||||| ||||| || || || || Sbjct 402348 TTGTTTGCCAGCAAAAATGAGACGTTGTTGATCTGGAGGAATGCCCTCTTTATCTTGAAT 402289 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | ||||| | || | ||||| || || | ||||| ||||| | Sbjct 402288 CTTA-GCTTTAACATTCTCAATACTATCAGATGGCTCGACCTCTAAGGTGATAGTTTTAC 402230 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| ||| || || ||||||||||| Sbjct 402229 CGGTCAAAGTCTTGACAAAAATCTGCAT 402202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || || || |||||||| || | ||| ||| | || || | Sbjct 390274 AAATGGAGAGTTGATTCCTTTTGGATATTGTAGTCAGATAAGGTGCGACCA-TCTTCCAA 390216 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || |||| | ||||| || || || || || ||||| || || ||| Sbjct 390215 CTGCTTACCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTATCTTGGAT 390156 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||| | || || | ||||| || || | ||||| ||||| | Sbjct 390155 -TTTAGCTTTGACGTTCTCGATAGTATCAGACGGCTCGACCTCTAAGGTGATAGTTTTAC 390097 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| ||| ||||| ||||||||||| Sbjct 390096 CGGTCAAAGTCTTTACAAAAATCTGCAT 390069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483268872928080