Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value SEQ24359 304 3e-77 SEQ19298 284 3e-71 seq1412 100 7e-16 seq5095 96.9 8e-15 seq608 89.7 1e-12 seq5318 84.2 5e-11 >SEQ24359 Length=906208 Score = 304 bits (336), Expect = 3e-77 Identities = 609/897 (68%), Gaps = 22/897 (2%) Strand=Plus/Minus Query 110270 TATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACG 110329 |||||| |||| |||||||| || | | | || ||||| || ||||| | ||||| Sbjct 359839 TATTAT---TTATGATCGTGACTTTGGTTATAATTACTTTGGATTTAAAACGTTAGAACG 359783 Query 110330 TGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCG 110389 | ||| | || | ||||| | | | ||| | || |||||| |||| | | Sbjct 359782 ATCGTATCTTCTCAAAATAAATGGGAAAGTTGTGGAAAGACCCCAACACCTGTTGATGAG 359723 Query 110390 -TGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTAT 110448 || | |||||||||| |||||| ||||||| ||| | |||||| |||| || | Sbjct 359722 ATGCT-CGATTGGTATACATGGAAATGATATAGAAGGAGCAATTGAAACTTATAATCTTC 359664 Query 110449 TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAG 110508 | | | | || ||||| | || || || ||| ||| | |||| || Sbjct 359663 TCTCCGAGCGGTACTTTACGCATGCATCGCCAACTCTGTTTTCCGCTGCCACTAGAAGAC 359604 Query 110509 GACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATG 110568 |||| | | || || || || || || ||||| || ||||| ||||||| Sbjct 359603 CACAACTTTCATCGTGTTTCCTGCTTACTATGGTTGATGACTCCATTGAGGGTATTTTCA 359544 Query 110569 ATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTC 110628 | | || || || |||| || || ||| ||||||| ||||| | | ||| Sbjct 359543 AGTCAGTTGAACAATGTGCTAAGATATCGAAATCAGCTGGAGGCATTGGATTAAATATTC 359484 Query 110629 ATGATATTCGCTCAAAAGGAGCAAATAT---CGCAACAGCGAAGGGTGCTTCAACTGGAC 110685 || |||||| | ||||| | ||| || |||| || |||| ||||| |||| Sbjct 359483 ATTGTATTCGAGCTAAAGGCACTTTTATAACCGGAACA---AATGGTGTTTCAAATGGAT 359427 Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGG---TGGTA 110742 | || |||||||||| ||| || ||| | |||| |||||| | ||||| ||||| Sbjct 359426 TAGTACCAATGTTAAAAGTTTTTAACAATGTGGCAAGATATGTTGACCAAGGCGGTGGTA 359367 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 | || ||| | ||||| || || || |||||||||||| | ||||||||||| || | Sbjct 359366 AAAGGCCTGGAGCTTTTGCCATTTACCTAGAACCTTGGCATCCCGATATATTTGACTTTT 359307 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 |||| ||| ||||| || |||||| | |||| || ||||||||||||||| Sbjct 359306 TAGATCTTAAAAAAAACACTGGTAAAGAAGAAAACCGAGCTCGAGATTTATTTTATGCAC 359247 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 | |||||| | |||||||| |||||||||||| ||| |||| | |||||||| |||| Sbjct 359246 TCTGGATTCCTGATTTATTTATGAAACGTGTTGAAGCTAATGAAAATTGGTCTCTAATGT 359187 Query 110923 GTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACG 110982 ||||| || | ||| || | ||| || | || |||||||| |||||| | || Sbjct 359186 GTCCTAATAAATGTCCCGGCTTGCATGAAGTTTGGGGTAAAGAGTTCGAAGACTTATATA 359127 Query 110983 AAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA----AATTCCAGCTCAAGAACTTTGG 111038 |||||||||||| ||||| || ||||| | ||| ||| |||| ||||||| Sbjct 359126 CAAAATATGAAAATGAAGGTAA----AGCAAATAAAACAATCAAAGCCCAAGCACTTTGG 359071 Query 111039 TTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCAT 111098 || || | ||| ||||| |||||||||| ||||| ||||| | |||||||| | Sbjct 359070 TTTGCCATAGTGGAAGCACAAATTGAAACTGGGACTCCATATATGCTATATAAAGACTCT 359011 Query 111099 ATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 ||||||||| ||||||| ||||| ||||| ||||||| |||||||| ||| Sbjct 359010 TGCAATCGCAAAAGTAATCAACAAAATTTGGGAACTATTAAGTGCAGTAATTTATGC 358954 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 112997 TACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAA 113056 || ||| ||||| || | || |||||||||||||| || || || || || | || || Sbjct 358462 TAGAAATTCTCTTCTTATCGCTCCAATGCCTACAGCATCAACAGCTCAAATATTAGGAAA 358403 Query 113057 TAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGA 113116 |||||||| ||| |||||| |||| ||||| ||| || | || || | ||||| Sbjct 358402 TAATGAATCTTTTGAGCCATATACATCGAATATATATACAAGAAGAGTGTTATCTGGTGA 358343 Query 113117 GTTTGTACTTTGTAATAAATATCTGCAAGAAGAACTTCTCGGAATCGGTA-AATGGAACA 113175 ||| | || |||||| || | | |||| ||| | ||| || | ||||||| Sbjct 358342 ATTTCAAGTTGTTAATAATCATTTATTAAAAGATCTT-ACTGAACTGGAACTATGGAACG 358284 Query 113176 ATGAAGTGAAAAACTCCAT--TATTGCTAATCAAGGTTCGGTTCAACAT 113222 | ||| | ||||| || || ||||| |||| ||| ||| ||||| || Sbjct 358283 ACGAATTAAAAAATTCAATACTATTG--AATCGAGGATCGATTCAAAAT 358237 >SEQ19298 Length=518036 Score = 284 bits (314), Expect = 3e-71 Identities = 436/618 (71%), Gaps = 13/618 (2%) Strand=Plus/Minus Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605 ||| || |||||||| |||| | | || || || |||| | || || ||| | Sbjct 236065 TGACTCAATTGAAGGAATTTTCAAGTCAGTTGAACAATGTGCTATGATATCAAAATCAGC 236006 Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665 || || ||||| | | |||||| ||| | | ||||| | ||| || | | Sbjct 236005 CGGTGGCATTGGATTAAATGTTCATTGCATTAGAGCTAAAGGCACGTTTATATCAGGAAC 235946 Query 110666 GAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725 || |||| ||||| |||| | || ||||||||||| || || || | |||| ||| Sbjct 235945 AAATGGTGTTTCAAATGGATTAGTGCCAATGTTAAGGGTATTTAATAATGTGGCAAGATA 235886 Query 110726 TGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782 ||| | ||||||||| || ||| ||| | ||||| || ||||| ||||||||||| Sbjct 235885 TGTTGACCAAGGTGGTGGTAAAAGACCTGGAGCTTTTGCAATTTATCTTGAACCTTGGCA 235826 Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGC 110842 ||| |||||||||||||| |||| ||| || ||| || |||||| | | || Sbjct 235825 TTCTGATATATTTGAATTTATAGATCTTAAGAAGAATACCGGTAAGGAAGAAAACCGCGC 235766 Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 || ||||||||||||||| | |||||| | |||||||| |||||||||||| ||| || Sbjct 235765 TCGAGATTTATTTTATGCACTTTGGATTCCTGATTTATTTATGAAACGTGTTGAAGCTAA 235706 Query 110903 TGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAA 110962 || | ||||| |||||||| || | | |||||| | ||| || | || | Sbjct 235705 TGAAAATTGGTCACTTATGTGCCCAAACAAATGTCCTGGCTTGCATGAGGTTTGGGGTGA 235646 Query 110963 AGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA----AA 111018 ||| |||||||| | || |||||||||||| |||| || ||||| | | Sbjct 235645 AGAATTTGAAGATTTATATACAAAATATGAAAAGGAAG----GTAGAGCAAATAGAGTAG 235590 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 || ||| |||| |||||||| || ||||| |||||||||||||||||||||||| Sbjct 235589 TTAAAGCACAAGCTCTTTGGTTTGCTATAATTGAAGCACAAGTTGAAACTGGAACTCCTT 235530 Query 111079 ATATTTTGTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137 |||| | ||||| || |||| ||||||||| ||||||| |||||||||||||| Sbjct 235529 ATATGCTATATAAGGATTCAT-GCAATCGCAAAAGTAATCAACAAAATTTAGGAACAATC 235471 Query 111138 AAGTCTAGTAATTTGTGC 111155 |||| |||||||| ||| Sbjct 235470 AAGTGCAGTAATTTATGC 235453 >seq1412 Length=297351 Score = 100 bits (110), Expect = 7e-16 Identities = 180/259 (69%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 304887 TACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTC 304946 |||||| |||| | || ||| | | |||||||| || |||| || | ||| | Sbjct 18770 TACAATTTCATGTAGCTACACTTGTTGATAATGATATGCCTGGTATGCCACGTGCAATGC 18829 Query 304947 AAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTA 305006 ||| |||||| | ||| ||||| | || | | ||| | || || ||||| || |||| Sbjct 18830 AAAAATCTGGTAAACCATTAAAAGCGATAAAGGCGCGCTTAAAGGGCAAAGAAGGGCGTA 18889 Query 305007 TTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTG 305066 |||| |||||| | ||||| ||||||||||||||| |||| | | ||| || ||||| | Sbjct 18890 TTCGTGGTAATTTGATGGGTAAACGTGTTGATTTTTCTGCACGTACTGTTATTACACCAG 18949 Query 305067 ATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACA 305125 | || ||| || || || || || | || || || | |||||| ||| | || Sbjct 18950 A-TCCCAACCTACGTATTGATCAAGTTGGTGTGCCTCGTTCAATTGCACAAAACTTGACT 19008 Query 305126 TTTCCAGAGAAAGTTAACG 305144 ||||| ||| || ||||| Sbjct 19009 TTTCCGGAGTTAG-TAACG 19026 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| ||| |||||| ||| | |||||| ||||||| | || || |||||| | Sbjct 19186 CATTTACGTGATGATGATTTGGTAATTTTCAATCGGCAACCTACGCTTCACAAAATGAGT 19245 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||| || ||||| || | | | |||||||| | ||| || | Sbjct 19246 ATGATGGGGCATCGCGTTAAAGTGTTGCCGTGGTCTACATTTCGTATGAATTTAT---CC 19302 Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || ||||| || |||||||| || ||||||||||| |||||||||| ||| Sbjct 19303 TGTACTTCCCCATATAACGCTGATTTTGACGGTGATGAAATGAACTTGCATGTACCACAA 19362 Query 305486 TC 305487 || Sbjct 19363 TC 19364 >seq5095 Length=92048 Score = 96.9 bits (106), Expect = 8e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||||| || |||| | | |||||||||||||||||||| ||||||||||| |||||| Sbjct 56253 ACTTTTCGTTTTAATGAATGCGCTTGTACGCCTTATAATGCAGATTTTGATGGTGATGAA 56194 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| ||||| |||| ||| Sbjct 56193 ATGAATTTGCATTTACCACAA 56173 >seq608 Length=77208 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| || | || |||| | ||| | || ||| ||||||| | | ||||||||| Sbjct 29245 AGACATATGCAGAACGATGACTTAGTTATTTTTAATCGGCAACCTACTTTACATAAAATG 29186 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 || ||||||| |||| ||| | ||| | | | |||||||| |||||| | | Sbjct 29185 TCAATGATGGGTCATCGTTGTAAAATTTTACCATGGTCAACATTTCGTTTAAATCT---T 29129 Query 305426 GCTTGTA---CGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 | |||| | || |||||||| ||||| ||||| |||||||||||| | ||| | || Sbjct 29128 TCCTGTACTTCACCATATAATGCTGATTTCGATGGCGATGAAATGAATTTACATTTCCCA 29069 Query 305483 CAA--TCAAA 305490 ||| ||||| Sbjct 29068 CAAACTCAAA 29059 >seq5318 Length=21156 Score = 84.2 bits (92), Expect = 5e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 113768 AATCATTTCATACttttttttCGTAAAAATATCTGTCGCAACAAAATGACACTTT-GCAT 113826 |||||| || |||||| | || ||||| |||||| || |||| |||||| ||||| |||| Sbjct 13150 AATCATCTCTTACTTTCTGTTAGTAAAGATATCTATCCCAACCAAATGA-ACTTTAGCAT 13208 Query 113827 GACCATGTTTTCCAGTTTTTGATGT 113851 |||||||||| |||| |||||||| Sbjct 13209 GACCATGTTTCCCAGACTTTGATGT 13233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186430489767462