Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
SEQ24359 304 3e-77
SEQ19298 284 3e-71
seq1412 100 7e-16
seq5095 96.9 8e-15
seq608 89.7 1e-12
seq5318 84.2 5e-11
>SEQ24359
Length=906208
Score = 304 bits (336), Expect = 3e-77
Identities = 609/897 (68%), Gaps = 22/897 (2%)
Strand=Plus/Minus
Query 110270 TATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACG 110329
|||||| |||| |||||||| || | | | || ||||| || ||||| | |||||
Sbjct 359839 TATTAT---TTATGATCGTGACTTTGGTTATAATTACTTTGGATTTAAAACGTTAGAACG 359783
Query 110330 TGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCG 110389
| ||| | || | ||||| | | | ||| | || |||||| |||| | |
Sbjct 359782 ATCGTATCTTCTCAAAATAAATGGGAAAGTTGTGGAAAGACCCCAACACCTGTTGATGAG 359723
Query 110390 -TGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTAT 110448
|| | |||||||||| |||||| ||||||| ||| | |||||| |||| || |
Sbjct 359722 ATGCT-CGATTGGTATACATGGAAATGATATAGAAGGAGCAATTGAAACTTATAATCTTC 359664
Query 110449 TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAG 110508
| | | | || ||||| | || || || ||| ||| | |||| ||
Sbjct 359663 TCTCCGAGCGGTACTTTACGCATGCATCGCCAACTCTGTTTTCCGCTGCCACTAGAAGAC 359604
Query 110509 GACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATG 110568
|||| | | || || || || || || ||||| || ||||| |||||||
Sbjct 359603 CACAACTTTCATCGTGTTTCCTGCTTACTATGGTTGATGACTCCATTGAGGGTATTTTCA 359544
Query 110569 ATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTC 110628
| | || || || |||| || || ||| ||||||| ||||| | | |||
Sbjct 359543 AGTCAGTTGAACAATGTGCTAAGATATCGAAATCAGCTGGAGGCATTGGATTAAATATTC 359484
Query 110629 ATGATATTCGCTCAAAAGGAGCAAATAT---CGCAACAGCGAAGGGTGCTTCAACTGGAC 110685
|| |||||| | ||||| | ||| || |||| || |||| ||||| ||||
Sbjct 359483 ATTGTATTCGAGCTAAAGGCACTTTTATAACCGGAACA---AATGGTGTTTCAAATGGAT 359427
Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGG---TGGTA 110742
| || |||||||||| ||| || ||| | |||| |||||| | ||||| |||||
Sbjct 359426 TAGTACCAATGTTAAAAGTTTTTAACAATGTGGCAAGATATGTTGACCAAGGCGGTGGTA 359367
Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802
| || ||| | ||||| || || || |||||||||||| | ||||||||||| || |
Sbjct 359366 AAAGGCCTGGAGCTTTTGCCATTTACCTAGAACCTTGGCATCCCGATATATTTGACTTTT 359307
Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862
|||| ||| ||||| || |||||| | |||| || |||||||||||||||
Sbjct 359306 TAGATCTTAAAAAAAACACTGGTAAAGAAGAAAACCGAGCTCGAGATTTATTTTATGCAC 359247
Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922
| |||||| | |||||||| |||||||||||| ||| |||| | |||||||| ||||
Sbjct 359246 TCTGGATTCCTGATTTATTTATGAAACGTGTTGAAGCTAATGAAAATTGGTCTCTAATGT 359187
Query 110923 GTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACG 110982
||||| || | ||| || | ||| || | || |||||||| |||||| | ||
Sbjct 359186 GTCCTAATAAATGTCCCGGCTTGCATGAAGTTTGGGGTAAAGAGTTCGAAGACTTATATA 359127
Query 110983 AAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA----AATTCCAGCTCAAGAACTTTGG 111038
|||||||||||| ||||| || ||||| | ||| ||| |||| |||||||
Sbjct 359126 CAAAATATGAAAATGAAGGTAA----AGCAAATAAAACAATCAAAGCCCAAGCACTTTGG 359071
Query 111039 TTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCAT 111098
|| || | ||| ||||| |||||||||| ||||| ||||| | |||||||| |
Sbjct 359070 TTTGCCATAGTGGAAGCACAAATTGAAACTGGGACTCCATATATGCTATATAAAGACTCT 359011
Query 111099 ATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155
||||||||| ||||||| ||||| ||||| ||||||| |||||||| |||
Sbjct 359010 TGCAATCGCAAAAGTAATCAACAAAATTTGGGAACTATTAAGTGCAGTAATTTATGC 358954
Score = 86.0 bits (94), Expect = 1e-11
Identities = 159/229 (69%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 112997 TACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAA 113056
|| ||| ||||| || | || |||||||||||||| || || || || || | || ||
Sbjct 358462 TAGAAATTCTCTTCTTATCGCTCCAATGCCTACAGCATCAACAGCTCAAATATTAGGAAA 358403
Query 113057 TAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGA 113116
|||||||| ||| |||||| |||| ||||| ||| || | || || | |||||
Sbjct 358402 TAATGAATCTTTTGAGCCATATACATCGAATATATATACAAGAAGAGTGTTATCTGGTGA 358343
Query 113117 GTTTGTACTTTGTAATAAATATCTGCAAGAAGAACTTCTCGGAATCGGTA-AATGGAACA 113175
||| | || |||||| || | | |||| ||| | ||| || | |||||||
Sbjct 358342 ATTTCAAGTTGTTAATAATCATTTATTAAAAGATCTT-ACTGAACTGGAACTATGGAACG 358284
Query 113176 ATGAAGTGAAAAACTCCAT--TATTGCTAATCAAGGTTCGGTTCAACAT 113222
| ||| | ||||| || || ||||| |||| ||| ||| ||||| ||
Sbjct 358283 ACGAATTAAAAAATTCAATACTATTG--AATCGAGGATCGATTCAAAAT 358237
>SEQ19298
Length=518036
Score = 284 bits (314), Expect = 3e-71
Identities = 436/618 (71%), Gaps = 13/618 (2%)
Strand=Plus/Minus
Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605
||| || |||||||| |||| | | || || || |||| | || || ||| |
Sbjct 236065 TGACTCAATTGAAGGAATTTTCAAGTCAGTTGAACAATGTGCTATGATATCAAAATCAGC 236006
Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665
|| || ||||| | | |||||| ||| | | ||||| | ||| || | |
Sbjct 236005 CGGTGGCATTGGATTAAATGTTCATTGCATTAGAGCTAAAGGCACGTTTATATCAGGAAC 235946
Query 110666 GAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725
|| |||| ||||| |||| | || ||||||||||| || || || | |||| |||
Sbjct 235945 AAATGGTGTTTCAAATGGATTAGTGCCAATGTTAAGGGTATTTAATAATGTGGCAAGATA 235886
Query 110726 TGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782
||| | ||||||||| || ||| ||| | ||||| || ||||| |||||||||||
Sbjct 235885 TGTTGACCAAGGTGGTGGTAAAAGACCTGGAGCTTTTGCAATTTATCTTGAACCTTGGCA 235826
Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGC 110842
||| |||||||||||||| |||| ||| || ||| || |||||| | | ||
Sbjct 235825 TTCTGATATATTTGAATTTATAGATCTTAAGAAGAATACCGGTAAGGAAGAAAACCGCGC 235766
Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902
|| ||||||||||||||| | |||||| | |||||||| |||||||||||| ||| ||
Sbjct 235765 TCGAGATTTATTTTATGCACTTTGGATTCCTGATTTATTTATGAAACGTGTTGAAGCTAA 235706
Query 110903 TGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAA 110962
|| | ||||| |||||||| || | | |||||| | ||| || | || |
Sbjct 235705 TGAAAATTGGTCACTTATGTGCCCAAACAAATGTCCTGGCTTGCATGAGGTTTGGGGTGA 235646
Query 110963 AGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA----AA 111018
||| |||||||| | || |||||||||||| |||| || ||||| | |
Sbjct 235645 AGAATTTGAAGATTTATATACAAAATATGAAAAGGAAG----GTAGAGCAAATAGAGTAG 235590
Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078
|| ||| |||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 235589 TTAAAGCACAAGCTCTTTGGTTTGCTATAATTGAAGCACAAGTTGAAACTGGAACTCCTT 235530
Query 111079 ATATTTTGTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137
|||| | ||||| || |||| ||||||||| ||||||| ||||||||||||||
Sbjct 235529 ATATGCTATATAAGGATTCAT-GCAATCGCAAAAGTAATCAACAAAATTTAGGAACAATC 235471
Query 111138 AAGTCTAGTAATTTGTGC 111155
|||| |||||||| |||
Sbjct 235470 AAGTGCAGTAATTTATGC 235453
>seq1412
Length=297351
Score = 100 bits (110), Expect = 7e-16
Identities = 180/259 (69%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 304887 TACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTC 304946
|||||| |||| | || ||| | | |||||||| || |||| || | ||| |
Sbjct 18770 TACAATTTCATGTAGCTACACTTGTTGATAATGATATGCCTGGTATGCCACGTGCAATGC 18829
Query 304947 AAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTA 305006
||| |||||| | ||| ||||| | || | | ||| | || || ||||| || ||||
Sbjct 18830 AAAAATCTGGTAAACCATTAAAAGCGATAAAGGCGCGCTTAAAGGGCAAAGAAGGGCGTA 18889
Query 305007 TTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTG 305066
|||| |||||| | ||||| ||||||||||||||| |||| | | ||| || ||||| |
Sbjct 18890 TTCGTGGTAATTTGATGGGTAAACGTGTTGATTTTTCTGCACGTACTGTTATTACACCAG 18949
Query 305067 ATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACA 305125
| || ||| || || || || || | || || || | |||||| ||| | ||
Sbjct 18950 A-TCCCAACCTACGTATTGATCAAGTTGGTGTGCCTCGTTCAATTGCACAAAACTTGACT 19008
Query 305126 TTTCCAGAGAAAGTTAACG 305144
||||| ||| || |||||
Sbjct 19009 TTTCCGGAGTTAG-TAACG 19026
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
||||| ||| |||||| ||| | |||||| ||||||| | || || |||||| |
Sbjct 19186 CATTTACGTGATGATGATTTGGTAATTTTCAATCGGCAACCTACGCTTCACAAAATGAGT 19245
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428
||||||| ||| || ||||| || | | | |||||||| | ||| || |
Sbjct 19246 ATGATGGGGCATCGCGTTAAAGTGTTGCCGTGGTCTACATTTCGTATGAATTTAT---CC 19302
Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
||||| || ||||| || |||||||| || ||||||||||| |||||||||| |||
Sbjct 19303 TGTACTTCCCCATATAACGCTGATTTTGACGGTGATGAAATGAACTTGCATGTACCACAA 19362
Query 305486 TC 305487
||
Sbjct 19363 TC 19364
>seq5095
Length=92048
Score = 96.9 bits (106), Expect = 8e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464
|| ||||| || |||| | | |||||||||||||||||||| ||||||||||| ||||||
Sbjct 56253 ACTTTTCGTTTTAATGAATGCGCTTGTACGCCTTATAATGCAGATTTTGATGGTGATGAA 56194
Query 305465 ATGAATATGCATGTACCTCAA 305485
|||||| ||||| |||| |||
Sbjct 56193 ATGAATTTGCATTTACCACAA 56173
>seq608
Length=77208
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/190 (71%), Gaps = 8/190 (4%)
Strand=Plus/Minus
Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365
|||||| || | || |||| | ||| | || ||| ||||||| | | |||||||||
Sbjct 29245 AGACATATGCAGAACGATGACTTAGTTATTTTTAATCGGCAACCTACTTTACATAAAATG 29186
Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425
|| ||||||| |||| ||| | ||| | | | |||||||| |||||| | |
Sbjct 29185 TCAATGATGGGTCATCGTTGTAAAATTTTACCATGGTCAACATTTCGTTTAAATCT---T 29129
Query 305426 GCTTGTA---CGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482
| |||| | || |||||||| ||||| ||||| |||||||||||| | ||| | ||
Sbjct 29128 TCCTGTACTTCACCATATAATGCTGATTTCGATGGCGATGAAATGAATTTACATTTCCCA 29069
Query 305483 CAA--TCAAA 305490
||| |||||
Sbjct 29068 CAAACTCAAA 29059
>seq5318
Length=21156
Score = 84.2 bits (92), Expect = 5e-11
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 113768 AATCATTTCATACttttttttCGTAAAAATATCTGTCGCAACAAAATGACACTTT-GCAT 113826
|||||| || |||||| | || ||||| |||||| || |||| |||||| ||||| ||||
Sbjct 13150 AATCATCTCTTACTTTCTGTTAGTAAAGATATCTATCCCAACCAAATGA-ACTTTAGCAT 13208
Query 113827 GACCATGTTTTCCAGTTTTTGATGT 113851
|||||||||| |||| ||||||||
Sbjct 13209 GACCATGTTTCCCAGACTTTGATGT 13233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186430489767462
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |