Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value SEQ19926 215 4e-51 SEQ18161 152 4e-32 SEQ23413 111 1e-19 SEQ14824 111 1e-19 SEQ11801 100 2e-16 >SEQ19926 Length=251428 Score = 215 bits (238), Expect = 4e-51 Identities = 498/744 (67%), Gaps = 10/744 (1%) Strand=Plus/Plus Query 40681 TGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAG 40740 ||||||| ||||||| | | || || ||| | |||||| | ||| ||| | Sbjct 63715 TGAGAAAAGGGTTTCCGCTATTGACAACTAAACGTGTTTTTTGGCGTGCTGTTGTAGAGG 63774 Query 40741 AACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGA-AAGAGGAGTG 40799 | || | |||||||| ||||| | || |||| || ||| ||| |||| | | Sbjct 63775 AGTTGCTGTGGTTTATAAAAGGATCAACAGATGCGCAGCTATTGCAAGATAAGAATA-TA 63833 Query 40800 CACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGG 40859 || |||||| ||| | | ||||| ||| ||| || | || ||||| || | Sbjct 63834 CATATTTGGGATGGGAATAGTTCCCGTGCATTTTTAGATAAACTTGGTTTACACGAACGT 63893 Query 40860 GATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919 || ||||| ||| | || || |||||||| ||||| | ||| ||||| || ||| ||||| Sbjct 63894 GAAGAAGGCGATTTAGGACCAGTTTATGGCTTTCAATGGCGTCATTTCGGTGCAGAATAT 63953 Query 40920 GACACTATGTACTC-TGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGA 40978 | | || || |||||| | |||| |||| || |||||| | | |||||| || Sbjct 63954 AAGGATC-GTCATCATGATTACAGCAATGAAGGTATTGATCAACTTAAAAACGTTATTGA 64012 Query 40979 TACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGA 41038 ||| || | |||| || || | || ||| ||| || ||||| ||| || Sbjct 64013 TACTATACGTACAAATCCAAATGATAGAAGGATTATAATGTCTGCATGGAATCCATGTGA 64072 Query 41039 CGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGG 41098 ||| | |||||| | ||||| || |||| ||| |||||||| ||| || | Sbjct 64073 TATACCTAAAATGGCACTACCACCATGCCATTGTTTAGCTCAGTTTTTCGTAGCTAACGA 64132 Query 41099 TGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAA 41158 ||| | || |||||| | ||||| | | ||| ||||| || || || || ||||| Sbjct 64133 TGAGTTATCTTGTCAACTATATCAGCGCAGTGCTGATATGGGTCTTGGTGTTCCATTTAA 64192 Query 41159 CATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGG 41218 || || ||||||| | || ||| |||||||||| || ||||| ||||| ||||| Sbjct 64193 TATTGCCTCTTATGCTTTACTTACGCATATGATTGCGCATGTTACGGGATTAAAGCCTGG 64252 Query 41219 TGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAAC 41278 | ||||| ||||| | || ||| ||| | || | ||||| | || || |||| Sbjct 64253 TTGTTTTGTACACACTATGGGTGATACGCATGTATATAAGAATCATGTCGAACCTTTAAA 64312 Query 41279 AGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGA 41338 || ||||| | ||| | || ||| | ||||||| | ||||| ||||| | || | Sbjct 64313 GGAGCAACTTAAACGTATTCCAAGAGCTTTTCCAAAATTGCTTATAAAACGTGAAGTAAA 64372 Query 41339 AAACATTGATGATTTTTGCATCGATGATTTTG---TCGTTTGCGATTACAATCCGTACCC 41395 || ||||| |||||| | | |||||||||| | || || || ||||| || || Sbjct 64373 AAGTATTGAAGATTTTACCTTTGATGATTTTGAAATAATTGGCTAT---AATCCATATCC 64429 Query 41396 TAAAATCCACATGGACATGTCTGT 41419 ||||||||| ||||| ||| |||| Sbjct 64430 TAAAATCCAAATGGAGATGGCTGT 64453 >SEQ18161 Length=539859 Score = 152 bits (168), Expect = 4e-32 Identities = 280/406 (69%), Gaps = 17/406 (4%) Strand=Plus/Plus Query 19535 GGCGCAAA-AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAA 19593 ||| |||| ||| | | |||||||| ||| | |||||| | || || || ||||| | Sbjct 231936 GGCCCAAATAGTGGTCTTCACATTATTATATTTGATGAAATTGATGCTATTTGTAAAGCA 231995 Query 19594 AGAGGTTCTGGTGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCA 19647 | ||||||| || | |||||| ||||| || |||||||||||| | ||| | Sbjct 231996 CGTGGTTCTGTTGCTGGCAACAGTGGAGTGCATGATACCGTTGTCAATCAATTGCTGGCT 232055 Query 19648 AAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTG 19707 || | || ||||| | ||||| |||||||| |||| ||||| ||||| ||| | | Sbjct 232056 AAGATTGATGGTGTGGAACAACTCAATAATATACTAGTCATTGGTATGACCAATCGTCGT 232115 Query 19708 GAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAAC 19767 || | || || || | ||||| || ||||| |||||| | | || || || | | Sbjct 232116 GATATGATTGATGAGGCTCTTTTACGTCCAGGTCGTTTGGAAGTTCAAATGGAGATAAGC 232175 Query 19768 TTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGAC 19825 ||||| ||||| |||||||| ||||||| || |||||||| ||| | |||||| Sbjct 232176 TTACCAAATGAACAGGGACGTGTACAAATTTTGAATATACATAC--CAAACGTATGCGAG 232233 Query 19826 AA---AATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAA 19882 || ||||| || || ||||| ||| |||||||||| | |||||||| Sbjct 232234 AATTTAATAAGATT---GCTGGGGATGTTGATAGTAAAGAAATTGCTACACTTACCAAAA 232290 Query 19883 ACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 | | ||| || || ||| | || || ||||| | || || ||||| Sbjct 232291 ATTTTAGTGGTGCTGAAATAGAAGGTTTAGTACGTGCAGCACAATC 232336 >SEQ23413 Length=15718 Score = 111 bits (122), Expect = 1e-19 Identities = 175/248 (71%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 ||||||||||| || || || | || ||| | || | ||| || || ||||| || Sbjct 1034 TTGTTTAATGCTATTGAGACCATGCCAGCGGTAAAGCGTAAGGCTGAATGGGCACTATCT 975 Query 44099 TGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| ||| || || ||||| ||||| | | || ||||| | ||| ||| Sbjct 974 TGGATTTCTTCTAAAAGTGCAAACTTTGGTGAACGTATCATTGCTTTTGCTGCTGTTGAA 915 Query 44156 GGCATTTTCTTTTCA--GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || || | |||||| ||| ||||| || || || ||||||||| |||| || | Sbjct 914 GGTATAT--TTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGTTAAAGCAACGTGGCATCT 857 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 ||||||| || || ||||| ||||| ||||| ||||||||| || |||||||| || | Sbjct 856 TGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATGAGGGATTACATTGTGACT 797 Query 44274 TTGCTTGC 44281 |||| ||| Sbjct 796 TTGCATGC 789 >SEQ14824 Length=19491 Score = 111 bits (122), Expect = 1e-19 Identities = 175/248 (71%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 ||||||||||| || || || | || ||| | || | ||| || || ||||| || Sbjct 5370 TTGTTTAATGCTATTGAGACCATGCCAGCGGTAAAGCGTAAGGCTGAATGGGCACTATCT 5311 Query 44099 TGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| ||| || || ||||| ||||| | | || ||||| | ||| ||| Sbjct 5310 TGGATTTCTTCTAAAAGTGCAAACTTTGGTGAACGTATCATTGCTTTTGCTGCTGTTGAA 5251 Query 44156 GGCATTTTCTTTTCA--GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || || | |||||| ||| ||||| || || || ||||||||| |||| || | Sbjct 5250 GGTATAT--TTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGTTAAAGCAACGTGGCATCT 5193 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 ||||||| || || ||||| ||||| ||||| ||||||||| || |||||||| || | Sbjct 5192 TGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATGAGGGATTACATTGTGACT 5133 Query 44274 TTGCTTGC 44281 |||| ||| Sbjct 5132 TTGCATGC 5125 Score = 111 bits (122), Expect = 1e-19 Identities = 175/248 (71%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 ||||||||||| || || || | || ||| | || | ||| || || ||||| || Sbjct 12169 TTGTTTAATGCTATTGAGACCATGCCAGCGGTAAAGCGTAAGGCTGAATGGGCACTATCT 12110 Query 44099 TGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| ||| || || ||||| ||||| | | || ||||| | ||| ||| Sbjct 12109 TGGATTTCTTCTAAAAGTGCAAACTTTGGTGAACGTATCATTGCTTTTGCTGCTGTTGAA 12050 Query 44156 GGCATTTTCTTTTCA--GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 || || | |||||| ||| ||||| || || || ||||||||| |||| || | Sbjct 12049 GGTATAT--TTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGTTAAAGCAACGTGGCATCT 11992 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 ||||||| || || ||||| ||||| ||||| ||||||||| || |||||||| || | Sbjct 11991 TGCCTGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATGAGGGATTACATTGTGACT 11932 Query 44274 TTGCTTGC 44281 |||| ||| Sbjct 11931 TTGCATGC 11924 >SEQ11801 Length=23874 Score = 100 bits (110), Expect = 2e-16 Identities = 289/435 (66%), Gaps = 26/435 (6%) Strand=Plus/Plus Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTT 44095 || ||||||||||| || || || | || || | || | ||| || || ||||| || Sbjct 20064 CGCTTGTTTAATGCTATTGAGACCATGCCAGCAGTAAAGCGTAAGGCTGAATGGGCACTA 20123 Query 44096 AAATGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 ||||| ||| || || ||||| ||||| | | || ||||| | || Sbjct 20124 GCTTGGATTTCTTCTAAAAGTGCGAACTTTGGTGAACGTATCATTGCTTTTGCTGCGGTT 20183 Query 44153 GAAGGCATTTTCTTTTCA--GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 ||||| || | |||||| ||| ||||| || || || ||||||||| |||| || Sbjct 20184 GAAGGTATAT--TTTTCAGTGGAAGTTTTGCTGCTATTTTCTGGTTAAAGCAACGTGGCA 20241 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 | ||| ||| || || ||||| ||||| ||||| ||||||||| || |||||||| | Sbjct 20242 TCTTGCATGGTTTAACATTTTCTAATGAATTAATTTCTCGTGATGAGGGATTACATTGTG 20301 Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAG--ACGATAAGCCTTCATGTAAG--AC- 44325 | ||||| ||| | | || | | || || | ||| || ||| |||| || Sbjct 20302 ACTTTGCATGCCTTATGTTTCAACA-CTTGGTGCAACG----GC---CATCTAAGCAACG 20353 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 |||| || ||| | ||| || || || || ||| |||| || | || ||| || Sbjct 20354 TATTATTGAAATTATAACAGATGCTGTTAAAATTGAAAAAGAGTTCCTAACTGTAGCTTT 20413 Query 44386 ACCTGTAAATTTAATAGGAATGAAT---GAACTTTTGATGAACCAATATATTGAATACAT 44442 |||| ||| | | || |||||| ||||| ||| ||||||||| |||| | Sbjct 20414 GTCTGTTAATCTCCTTGGTATGAATTGCAAACTT---ATGTCCCAATATATAGAATTTGT 20470 Query 44443 TGCAGATCGTTTACT 44457 ||| |||||||| || Sbjct 20471 TGCCGATCGTTTGCT 20485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397334212277710