Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value SEQ18352 107 1e-18 seq5553 87.8 1e-12 seq2607 87.8 1e-12 >SEQ18352 Length=541547 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||| |||||||||||| | ||||| ||| ||||| | || ||||| Sbjct 388926 AACATGCAAATCTTTGTGAAAACTTTGACTGGTAAAACCATTACTTTGGAAGTCGAGCCA 388985 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || | ||| ||||| ||||| || || |||||| |||| | Sbjct 388986 TCCGACACCATTGAAAAT--GTCAAGGCTAAAATTCAGGATAAGGAAGGTATTCCACCAG 389043 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||||||||| || || |||||||| || | || | | | ||||| | Sbjct 389044 ACCAACAACGTTTAATTTTTGCTGGTAAGCAATTGGAGGATGGGCGTACCCTCTCCGACT 389103 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || ||| | || ||||| |||||| | ||||| || Sbjct 389104 ACAACATTCAAAAGGAATCAACTCTCCACTTGGTCTTGCGTCTACGTGGTGG 389155 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| | ||||| ||| ||||||| | || |||||| ||| | Sbjct 400150 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACTATTACATTGGAAGTCGAA-GCATC 400208 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||||| | || ||||| || || || ||||| || |||| || Sbjct 400209 TGACACGATTGAGAAC--GTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCAGAC 400266 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| || ||||| || || ||||||||||| || | ||| | | | || |||||| Sbjct 400267 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGACGTACCCTCTCTGATTAC 400326 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| || |||||||||||||| || ||| | |||||||| Sbjct 400327 AATATTCAAAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGG 400376 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| ||||| ||||| || |||||| | || Sbjct 389478 GACAAAGAAGGTATTCCTCCAGATCAACAACGTTTAATCTTTGCTGGCAAACAACTTGAA 389537 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | |||||||||||||||||||| || ||||| |||||||| ||| Sbjct 389538 GATGGTCGTACTCTCTCCGATTACAACATCCAAAAGGAATCTACTTTACATTTGGTATTG 389597 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 389598 CGTCTACGTGGTGG 389611 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| | ||||| ||| |||||| | || |||||| ||| | Sbjct 401974 ATGCAGATATTTGTAAAAACCTTGACTGGCAAAACCATTACATTGGAAGTCGAA-GCATC 402032 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||||| | || ||||| ||||| || |||||||| |||| || Sbjct 402033 TGACACGATTGAGAAC--GTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCTCCAGAC 402090 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| || ||||| || || ||||||||||| || | |||| | | || || ||| Sbjct 402091 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGCACCCTCTCTGACTAC 402150 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| ||| | |||||||| || || | |||||||| Sbjct 402151 AACATACAGAAAGAATCCACACTTCATTTGGTATTACGCCTACGTGGCGG 402200 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || || || || |||||| | || |||||| | Sbjct 401062 ATGCAGATATTTGTTAAAACCCTGACCGGCAAGACCATTACACTAGAAGTCGAACCATCT 401121 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | | ||||| ||||| |||||||| || |||| || || Sbjct 401122 GATAGTATTGAGAACGTCAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCAGACCAA 401181 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || ||||| || ||||||||||| || | |||| | | ||||||||||| Sbjct 401182 CAACGTTTGATATTTGCTGGTAAACAATTGGAAGATGGTCGCACCCTCTCCGATTACAAT 401241 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || |||||||||||||| || ||| | |||||||| Sbjct 401242 ATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGG 401288 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || || || ||||| ||||| || |||||| | || Sbjct 390618 GACAAAGAAGGTATTCCTCCAGATCAACAGCGTTTAATCTTTGCTGGCAAACAACTTGAA 390677 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | |||||||||||||||||||| || ||||| |||||||| ||| Sbjct 390678 GATGGTCGTACTCTCTCCGATTACAACATCCAAAAGGAATCTACTTTACATTTGGTATTG 390737 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 390738 CGTCTACGTGGTGG 390751 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || |||||||| |||| || || || || ||||| ||||| || |||||| | || Sbjct 390846 GATAAAGAAGGCATTCCCCCAGATCAACAGCGTTTAATCTTTGCTGGCAAACAACTTGAA 390905 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||||||| |||||||||||||| || ||||| |||||||| ||| Sbjct 390906 GATGGTCGTACTTTGTCCGACTACAACATCCAAAAGGAATCTACTTTACATTTGGTATTG 390965 Query 28003 CGTTTGCGTGGCGG 28016 ||||| ||||| || Sbjct 390966 CGTTTACGTGGTGG 390979 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || || ||||| || || |||||||| ||||||||||| Sbjct 400927 GACAAAGAGGGCATTCCTCCAGATCAACAACGTTTGATATTTGCCGGTAAACAATTGGAA 400986 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | | |||||||| || || ||||| || |||||||||||||| || Sbjct 400987 GATGGACGTACTCTCTCCGATTATAATATTCAAAAGGAATCTACTTTGCATTTGGTATTA 401046 Query 28003 CGTTTGCGTGGCGG 28016 ||| | |||||||| Sbjct 401047 CGTCTACGTGGCGG 401060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| | ||||| ||| |||||| | || |||||| ||| | Sbjct 401518 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACAATTACATTGGAAGTCGAA-GCATC 401576 Query 27850 -GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||| | ||||| || || || ||||| || |||| Sbjct 401577 TGAC-----ACAATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCA 401631 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || ||||| || || || |||||||| || | ||| | | |||||| Sbjct 401632 GACCAACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGACGTACTCTCTCCGAT 401691 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || || || |||||||||||||| || ||| | |||||||| Sbjct 401692 TACAATATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGG 401744 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | ||||| ||| || || | || || ||| | Sbjct 399694 ATGCAGATATTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCTTCG 399753 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| || || || ||| ||||| |||||||||||| | ||| || || Sbjct 399754 GACACAATAGAAAATGTAAAATCTAAAATTCAAGACAAAGAAGGTATACCGCCAGATCAA 399813 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| |||| ||||| || |||||| | || || | || | | ||||| |||||| Sbjct 399814 CAACGTCTAATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACTCTCTCCGACTACAAC 399873 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || |||||||||||||| || ||| | ||||| || Sbjct 399874 ATTCAGAAGGAATCTACTTTGCATTTGGTGTTACGTCTACGTGGTGG 399920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| | ||||| ||| ||||| | || |||||| ||| | Sbjct 400606 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACAATTACGTTGGAAGTCGAA-GCATC 400664 Query 27850 -GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||| | ||||| || || || ||||| || |||| Sbjct 400665 TGAC-----ACAATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCA 400719 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || ||||| || || || |||||||| || | ||| | | |||||| Sbjct 400720 GACCAACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGACGTACTCTCTCCGAT 400779 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || || || |||||||||||||| || ||| | |||||||| Sbjct 400780 TACAATATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGG 400832 >seq5553 Length=18996 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || |||||||| || |||||||| || ||||||||||| Sbjct 18452 GACAAAGAGGGAATTCCTCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAA 18511 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA--GAGCACTTTGCATTTGGTTT 28000 || | |||| ||||||||||| || || ||||| || | ||||| || ||||| | Sbjct 18512 GATGGTCGCACATTGTCCGATTATAATATTCAAAAGGAATCAACACTT--CACTTGGTGT 18569 Query 28001 TGCGTTTGCGTGGCGG 28016 |||| | ||||| || Sbjct 18570 TGCGCCTACGTGGTGG 18585 >seq2607 Length=223464 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| || |||||||| || |||||||| || ||||||||||| Sbjct 124938 GACAAAGAGGGAATTCCTCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAA 124879 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA--GAGCACTTTGCATTTGGTTT 28000 || | |||| ||||||||||| || || ||||| || | ||||| || ||||| | Sbjct 124878 GATGGTCGCACATTGTCCGATTATAATATTCAAAAGGAATCAACACTT--CACTTGGTGT 124821 Query 28001 TGCGTTTGCGTGGCGG 28016 |||| | ||||| || Sbjct 124820 TGCGCCTACGTGGTGG 124805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355753357310634