Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
SEQ18352 107 1e-18
seq5553 87.8 1e-12
seq2607 87.8 1e-12
>SEQ18352
Length=541547
Score = 107 bits (118), Expect = 1e-18
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| |||||||| |||||||||||| | ||||| ||| ||||| | || |||||
Sbjct 388926 AACATGCAAATCTTTGTGAAAACTTTGACTGGTAAAACCATTACTTTGGAAGTCGAGCCA 388985
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||||| || | ||| ||||| ||||| || || |||||| |||| |
Sbjct 388986 TCCGACACCATTGAAAAT--GTCAAGGCTAAAATTCAGGATAAGGAAGGTATTCCACCAG 389043
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| ||||||||||| || || |||||||| || | || | | | ||||| |
Sbjct 389044 ACCAACAACGTTTAATTTTTGCTGGTAAGCAATTGGAGGATGGGCGTACCCTCTCCGACT 389103
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| ||||| || ||| | || ||||| |||||| | ||||| ||
Sbjct 389104 ACAACATTCAAAAGGAATCAACTCTCCACTTGGTCTTGCGTCTACGTGGTGG 389155
Score = 105 bits (116), Expect = 5e-18
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| | ||||| ||| ||||||| | || |||||| ||| |
Sbjct 400150 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACTATTACATTGGAAGTCGAA-GCATC 400208
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||||| | || ||||| || || || ||||| || |||| ||
Sbjct 400209 TGACACGATTGAGAAC--GTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCAGAC 400266
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| ||||| || ||||| || || ||||||||||| || | ||| | | | || ||||||
Sbjct 400267 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGACGTACCCTCTCTGATTAC 400326
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || ||||| || |||||||||||||| || ||| | ||||||||
Sbjct 400327 AATATTCAAAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGG 400376
Score = 98.7 bits (108), Expect = 7e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||||||| |||| || || ||||| ||||| ||||| || |||||| | ||
Sbjct 389478 GACAAAGAAGGTATTCCTCCAGATCAACAACGTTTAATCTTTGCTGGCAAACAACTTGAA 389537
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | | |||||||||||||||||||| || ||||| |||||||| |||
Sbjct 389538 GATGGTCGTACTCTCTCCGATTACAACATCCAAAAGGAATCTACTTTACATTTGGTATTG 389597
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 389598 CGTCTACGTGGTGG 389611
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| | ||||| ||| |||||| | || |||||| ||| |
Sbjct 401974 ATGCAGATATTTGTAAAAACCTTGACTGGCAAAACCATTACATTGGAAGTCGAA-GCATC 402032
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||||| | || ||||| ||||| || |||||||| |||| ||
Sbjct 402033 TGACACGATTGAGAAC--GTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCTCCAGAC 402090
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| ||||| || ||||| || || ||||||||||| || | |||| | | || || |||
Sbjct 402091 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGTCGCACCCTCTCTGACTAC 402150
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || ||||| ||| | |||||||| || || | ||||||||
Sbjct 402151 AACATACAGAAAGAATCCACACTTCATTTGGTATTACGCCTACGTGGCGG 402200
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| || || || || |||||| | || |||||| |
Sbjct 401062 ATGCAGATATTTGTTAAAACCCTGACCGGCAAGACCATTACACTAGAAGTCGAACCATCT 401121
Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909
|| | | | ||||| ||||| |||||||| || |||| || ||
Sbjct 401122 GATAGTATTGAGAACGTCAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCAGACCAA 401181
Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969
||||| || || ||||| || ||||||||||| || | |||| | | |||||||||||
Sbjct 401182 CAACGTTTGATATTTGCTGGTAAACAATTGGAAGATGGTCGCACCCTCTCCGATTACAAT 401241
Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || || || |||||||||||||| || ||| | ||||||||
Sbjct 401242 ATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGG 401288
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||||||| |||| || || || || ||||| ||||| || |||||| | ||
Sbjct 390618 GACAAAGAAGGTATTCCTCCAGATCAACAGCGTTTAATCTTTGCTGGCAAACAACTTGAA 390677
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | | |||||||||||||||||||| || ||||| |||||||| |||
Sbjct 390678 GATGGTCGTACTCTCTCCGATTACAACATCCAAAAGGAATCTACTTTACATTTGGTATTG 390737
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 390738 CGTCTACGTGGTGG 390751
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| |||||||| |||| || || || || ||||| ||||| || |||||| | ||
Sbjct 390846 GATAAAGAAGGCATTCCCCCAGATCAACAGCGTTTAATCTTTGCTGGCAAACAACTTGAA 390905
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | |||||||| |||||||||||||| || ||||| |||||||| |||
Sbjct 390906 GATGGTCGTACTTTGTCCGACTACAACATCCAAAAGGAATCTACTTTACATTTGGTATTG 390965
Query 28003 CGTTTGCGTGGCGG 28016
||||| ||||| ||
Sbjct 390966 CGTTTACGTGGTGG 390979
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||| || |||| || || ||||| || || |||||||| |||||||||||
Sbjct 400927 GACAAAGAGGGCATTCCTCCAGATCAACAACGTTTGATATTTGCCGGTAAACAATTGGAA 400986
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | ||| | | |||||||| || || ||||| || |||||||||||||| ||
Sbjct 400987 GATGGACGTACTCTCTCCGATTATAATATTCAAAAGGAATCTACTTTGCATTTGGTATTA 401046
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||||||
Sbjct 401047 CGTCTACGTGGCGG 401060
Score = 89.7 bits (98), Expect = 4e-13
Identities = 161/233 (69%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| | ||||| ||| |||||| | || |||||| ||| |
Sbjct 401518 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACAATTACATTGGAAGTCGAA-GCATC 401576
Query 27850 -GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
||| ||||| | ||||| || || || ||||| || ||||
Sbjct 401577 TGAC-----ACAATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCA 401631
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || ||||| || ||||| || || || |||||||| || | ||| | | ||||||
Sbjct 401632 GACCAACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGACGTACTCTCTCCGAT 401691
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || || || || |||||||||||||| || ||| | ||||||||
Sbjct 401692 TACAATATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGG 401744
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| |||||| | ||||| ||| || || | || || ||| |
Sbjct 399694 ATGCAGATATTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCTTCG 399753
Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909
||| || || || ||| ||||| |||||||||||| | ||| || ||
Sbjct 399754 GACACAATAGAAAATGTAAAATCTAAAATTCAAGACAAAGAAGGTATACCGCCAGATCAA 399813
Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969
||||| |||| ||||| || |||||| | || || | || | | ||||| ||||||
Sbjct 399814 CAACGTCTAATCTTTGCTGGCAAACAACTTGAAGATGGTCGTACTCTCTCCGACTACAAC 399873
Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || || || |||||||||||||| || ||| | ||||| ||
Sbjct 399874 ATTCAGAAGGAATCTACTTTGCATTTGGTGTTACGTCTACGTGGTGG 399920
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/233 (69%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| | ||||| ||| ||||| | || |||||| ||| |
Sbjct 400606 ATGCAGATATTTGTTAAAACCTTGACTGGCAAAACAATTACGTTGGAAGTCGAA-GCATC 400664
Query 27850 -GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
||| ||||| | ||||| || || || ||||| || ||||
Sbjct 400665 TGAC-----ACAATTGAGAACGTCAAGGCCAAGATTCAAGATAAAGAGGGCATTCCTCCA 400719
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || ||||| || ||||| || || || |||||||| || | ||| | | ||||||
Sbjct 400720 GACCAACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGACGTACTCTCTCCGAT 400779
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || || || || |||||||||||||| || ||| | ||||||||
Sbjct 400780 TACAATATTCAGAAGGAATCTACTTTGCATTTGGTATTACGTCTACGTGGCGG 400832
>seq5553
Length=18996
Score = 87.8 bits (96), Expect = 1e-12
Identities = 102/136 (75%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||| || |||| || |||||||| || |||||||| || |||||||||||
Sbjct 18452 GACAAAGAGGGAATTCCTCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAA 18511
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA--GAGCACTTTGCATTTGGTTT 28000
|| | |||| ||||||||||| || || ||||| || | ||||| || ||||| |
Sbjct 18512 GATGGTCGCACATTGTCCGATTATAATATTCAAAAGGAATCAACACTT--CACTTGGTGT 18569
Query 28001 TGCGTTTGCGTGGCGG 28016
|||| | ||||| ||
Sbjct 18570 TGCGCCTACGTGGTGG 18585
>seq2607
Length=223464
Score = 87.8 bits (96), Expect = 1e-12
Identities = 102/136 (75%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||| || |||| || |||||||| || |||||||| || |||||||||||
Sbjct 124938 GACAAAGAGGGAATTCCTCCAGATCAGCAACGTTTGATTTTTGCTGGTAAACAATTGGAA 124879
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA--GAGCACTTTGCATTTGGTTT 28000
|| | |||| ||||||||||| || || ||||| || | ||||| || ||||| |
Sbjct 124878 GATGGTCGCACATTGTCCGATTATAATATTCAAAAGGAATCAACACTT--CACTTGGTGT 124821
Query 28001 TGCGTTTGCGTGGCGG 28016
|||| | ||||| ||
Sbjct 124820 TGCGCCTACGTGGTGG 124805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355753357310634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |