Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value SEQ23413 143 2e-29 SEQ14824 143 2e-29 SEQ11801 134 1e-26 >SEQ23413 Length=15718 Score = 143 bits (158), Expect = 2e-29 Identities = 190/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 || ||||||||| || | | |||||||||||| ||||| | |||||| || || || || Sbjct 1115 AACATAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 1174 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936 ||||||||| |||||||||||||| || ||||||||||| | | || | || ||||| Sbjct 1175 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 1234 Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 || ||||| || ||||| ||| || ||||| || || || | ||| ||||| || Sbjct 1235 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATA 1294 Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056 | |||| || | ||| | ||| | |||||| |||| | ||||| ||||| Sbjct 1295 ACGCTCGTTGTCATTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 1354 Query 5057 AACAGTCCAAAACGACGCTTCCGC 5080 ||| |||||| || || || || Sbjct 1355 CACAACCCAAAAAGAAGCCTCAGC 1378 >SEQ14824 Length=19491 Score = 143 bits (158), Expect = 2e-29 Identities = 190/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 || ||| ||||| || | | |||||||||||| ||||| | |||||| || || || || Sbjct 5451 AACATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 5510 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936 ||||||||| |||||||||||||| || ||||||||||| | | || | || ||||| Sbjct 5511 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 5570 Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 || ||||| || ||||| ||| || ||||| || || || | ||| |||||||| Sbjct 5571 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 5630 Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056 | |||| || | ||| | ||| | |||||| |||| | ||||| ||||| Sbjct 5631 ACGCTCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 5690 Query 5057 AACAGTCCAAAACGACGCTTCCGC 5080 ||| |||||| || || || || Sbjct 5691 CACAACCCAAAAAGAAGCCTCAGC 5714 Score = 143 bits (158), Expect = 2e-29 Identities = 190/264 (72%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 || ||| ||||| || | | |||||||||||| ||||| | |||||| || || || || Sbjct 12250 AACATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 12309 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936 ||||||||| |||||||||||||| || ||||||||||| | | || | || ||||| Sbjct 12310 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 12369 Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 || ||||| || ||||| ||| || ||||| || || || | ||| |||||||| Sbjct 12370 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 12429 Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056 | |||| || | ||| | ||| | |||||| |||| | ||||| ||||| Sbjct 12430 ACGCTCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 12489 Query 5057 AACAGTCCAAAACGACGCTTCCGC 5080 ||| |||||| || || || || Sbjct 12490 CACAACCCAAAAAGAAGCCTCAGC 12513 >SEQ11801 Length=23874 Score = 134 bits (148), Expect = 1e-26 Identities = 188/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 |||||| ||||| || | | |||||||||||| ||||| | || || |||||||| || Sbjct 19987 AATATAGGTGTCAATCAAGATGCTATACATTTCGGAATGGACGTTCTCCATAGCAATTTG 19928 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936 ||||||||| |||||||||||||| | ||||||||||| || | || | || ||||| Sbjct 19927 AAATCCGTAGAAGCATCTAGCTTCAGCAACTTGAACTTCTTTGCTGAAGCGCTCCACTAA 19868 Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 || ||||| || ||||| ||| || ||||| || || || | ||| | |||| | Sbjct 19867 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAAGAAAGAA 19808 Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056 | |||| || | ||| | ||| | |||||| |||| | ||||| ||||| Sbjct 19807 ACGCTCGTTTTCTTTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 19748 Query 5057 AACAGTCCAAAACGACGCTTCCGC 5080 ||| ||| || || || || || Sbjct 19747 CACAACCCAGAAAGAAGCCTCAGC 19724 Score = 91.5 bits (100), Expect = 1e-13 Identities = 217/327 (66%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 4366 GAGCT--ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTT 4423 ||||| || ||||| || || || |||||||||||||| ||| ||| |||| ||| || Sbjct 20495 GAGCTGAACTAGCAAACGATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATT 20436 Query 4424 AATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483 || |||| | | |||| | || || | ||||||| ||| || | || || Sbjct 20435 CATACCAAGGAGATTAACAGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGC 20376 Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAA 4543 ||||| || || || | || | |||||||| | || |||| | ||||| Sbjct 20375 ATCTGTTATAATTTCAATAATACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACAT 20316 Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603 | || ||||| |||||||| || || || || | ||| | ||| |||||||| || Sbjct 20315 AAGGCATGCAAAGTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGT 20256 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 ||| || ||| | || | | || | ||| || ||||| ||||| ||| || Sbjct 20255 TAAACCATGCAAGATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAA 20196 Query 4664 GAATATGCCTTCTACGGCGGCAAACGC 4690 ||||| ||||| || || ||||| || Sbjct 20195 AAATATACCTTCAACCGCAGCAAAAGC 20169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426918744262286