Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28]
25,142 sequences; 621,706,043 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
SEQ23413 143 2e-29
SEQ14824 143 2e-29
SEQ11801 134 1e-26
>SEQ23413
Length=15718
Score = 143 bits (158), Expect = 2e-29
Identities = 190/264 (72%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876
|| ||||||||| || | | |||||||||||| ||||| | |||||| || || || ||
Sbjct 1115 AACATAAGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 1174
Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936
||||||||| |||||||||||||| || ||||||||||| | | || | || |||||
Sbjct 1175 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 1234
Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996
|| ||||| || ||||| ||| || ||||| || || || | ||| ||||| ||
Sbjct 1235 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAATA 1294
Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056
| |||| || | ||| | ||| | |||||| |||| | ||||| |||||
Sbjct 1295 ACGCTCGTTGTCATTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 1354
Query 5057 AACAGTCCAAAACGACGCTTCCGC 5080
||| |||||| || || || ||
Sbjct 1355 CACAACCCAAAAAGAAGCCTCAGC 1378
>SEQ14824
Length=19491
Score = 143 bits (158), Expect = 2e-29
Identities = 190/264 (72%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876
|| ||| ||||| || | | |||||||||||| ||||| | |||||| || || || ||
Sbjct 5451 AACATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 5510
Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936
||||||||| |||||||||||||| || ||||||||||| | | || | || |||||
Sbjct 5511 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 5570
Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996
|| ||||| || ||||| ||| || ||||| || || || | ||| ||||||||
Sbjct 5571 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 5630
Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056
| |||| || | ||| | ||| | |||||| |||| | ||||| |||||
Sbjct 5631 ACGCTCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 5690
Query 5057 AACAGTCCAAAACGACGCTTCCGC 5080
||| |||||| || || || ||
Sbjct 5691 CACAACCCAAAAAGAAGCCTCAGC 5714
Score = 143 bits (158), Expect = 2e-29
Identities = 190/264 (72%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876
|| ||| ||||| || | | |||||||||||| ||||| | |||||| || || || ||
Sbjct 12250 AACATAGGTGTCAATCAAGATGCTATACATTTCTGAATGCACATTTTCAATTGCTATTTG 12309
Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936
||||||||| |||||||||||||| || ||||||||||| | | || | || |||||
Sbjct 12310 AAATCCGTAGAAGCATCTAGCTTCAGTAACTTGAACTTCTTGGCTGAAGCGCTCCACTAA 12369
Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996
|| ||||| || ||||| ||| || ||||| || || || | ||| ||||||||
Sbjct 12370 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAATAAAGTA 12429
Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056
| |||| || | ||| | ||| | |||||| |||| | ||||| |||||
Sbjct 12430 ACGCTCGTTGTCATTTAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 12489
Query 5057 AACAGTCCAAAACGACGCTTCCGC 5080
||| |||||| || || || ||
Sbjct 12490 CACAACCCAAAAAGAAGCCTCAGC 12513
>SEQ11801
Length=23874
Score = 134 bits (148), Expect = 1e-26
Identities = 188/264 (71%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876
|||||| ||||| || | | |||||||||||| ||||| | || || |||||||| ||
Sbjct 19987 AATATAGGTGTCAATCAAGATGCTATACATTTCGGAATGGACGTTCTCCATAGCAATTTG 19928
Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAA 4936
||||||||| |||||||||||||| | ||||||||||| || | || | || |||||
Sbjct 19927 AAATCCGTAGAAGCATCTAGCTTCAGCAACTTGAACTTCTTTGCTGAAGCGCTCCACTAA 19868
Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996
|| ||||| || ||||| ||| || ||||| || || || | ||| | |||| |
Sbjct 19867 ATTCTCGTTAACAATACCATCAGAAGCAGCAAAGAAAGCTAAGATATGCTTAAGAAAGAA 19808
Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTC 5056
| |||| || | ||| | ||| | |||||| |||| | ||||| |||||
Sbjct 19807 ACGCTCGTTTTCTTTCAATTTCTCCCAATCATCCAAATCCTTAGCAAGGTCAACCTCTTC 19748
Query 5057 AACAGTCCAAAACGACGCTTCCGC 5080
||| ||| || || || || ||
Sbjct 19747 CACAACCCAGAAAGAAGCCTCAGC 19724
Score = 91.5 bits (100), Expect = 1e-13
Identities = 217/327 (66%), Gaps = 2/327 (1%)
Strand=Plus/Minus
Query 4366 GAGCT--ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTT 4423
||||| || ||||| || || || |||||||||||||| ||| ||| |||| ||| ||
Sbjct 20495 GAGCTGAACTAGCAAACGATCGGCAACAAATTCTATATATTGGGACATAAGTTTGCAATT 20436
Query 4424 AATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483
|| |||| | | |||| | || || | ||||||| ||| || | || ||
Sbjct 20435 CATACCAAGGAGATTAACAGACAAAGCTACAGTTAGGAACTCTTTTTCAATTTTAACAGC 20376
Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAA 4543
||||| || || || | || | |||||||| | || |||| | |||||
Sbjct 20375 ATCTGTTATAATTTCAATAATACGTTGCTTAGATGGCCGTTGCACCAAGTGTTGAAACAT 20316
Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603
| || ||||| |||||||| || || || || | ||| | ||| |||||||| ||
Sbjct 20315 AAGGCATGCAAAGTCACAATGTAATCCCTCATCACGAGAAATTAATTCATTAGAAAATGT 20256
Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663
||| || ||| | || | | || | ||| || ||||| ||||| ||| ||
Sbjct 20255 TAAACCATGCAAGATGCCACGTTGCTTTAACCAGAAAATAGCAGCAAAACTTCCACTGAA 20196
Query 4664 GAATATGCCTTCTACGGCGGCAAACGC 4690
||||| ||||| || || ||||| ||
Sbjct 20195 AAATATACCTTCAACCGCAGCAAAAGC 20169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426918744262286
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |