Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Teleopsis_20dalmanni_20[genbank_20GCA_5F002237135.1_202017-07-28] 25,142 sequences; 621,706,043 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value SEQ18161 107 3e-18 SEQ19160 89.7 7e-13 SEQ18560 89.7 7e-13 >SEQ18161 Length=539859 Score = 107 bits (118), Expect = 3e-18 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 156155 AGCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAA 156214 ||| ||| ||| | |||||||| || || || || ||||| |||||||| | |||| Sbjct 231847 AGCTTCTGCAAAGAGTCGTCTGATATTTGCCTCAGACTCACCAACATATTTATCCAATAT 231788 Query 156215 TTCAGGACCGTTAACTATTTTGACGGGTC--GTG-ATTTAAAAGCTTGAGCGATACAGCG 156271 || ||||| ||||| ||||| || || ||| ||| || | || | | || || Sbjct 231787 TTGTGGACCATTAACAATTTTT--GGTTCACGTGCATTCAACATATT-ACCAATCTGTCG 231731 Query 156272 AGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTT 156331 ||||| | |||||||| |||||||| || || | || || ||||| | ||||| Sbjct 231730 TGCCATAAGCGTTTTACCAGTACCAGGAGGACCATAGAGCAGTATGCCTTTAACGTGTTT 231671 Query 156332 ACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAA 156391 ||||||||||| |||| | ||| |||| | ||||||||||||| || ||| Sbjct 231670 ACAACCTAATTGTTCAACAAGTTCAGGTGGAAAAACACGTGAAGCAAATGCTCGTCTAAA 231611 Query 156392 AATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 || | || ||||||||||| || || | ||||||| |||| | ||||| Sbjct 231610 TATAGCATTGAACTCTTTATCCAAGCCACCAATTCCCATTTTGCCAAAGTCCCAAT 231555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 || |||||||| | ||| |||| ||||| ||||| | || || || | | |||||| Sbjct 232210 TTCAAAATTTGTACACGTCCCTGTTCATTTGGTAAGCTTATCTCCATTTGAACTTCCAAA 232151 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || || | ||| | || || ||||| | || | | ||||||||||| |||| | Sbjct 232150 CGACCTGGACGTAAAAGAGCCTCATCAATCATATCACGACGATTGGTCATACCAATGACT 232091 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 | || || || | ||| ||||| || || |||| || ||||||||||| |||| Sbjct 232090 AGTATATTATTGAGTTGTTCCACACCATCAATCTTAGCCAGCAATTGATTGACAACGGTA 232031 Query 156051 TCGTGC 156056 || ||| Sbjct 232030 TCATGC 232025 >SEQ19160 Length=94237 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 63752 AAATAGGTGATAAATTTGCTTCTTTTACAGCTCAAAAAGGTACGTGTGGTATGATTTATC 63811 |||| || || || ||||||||| | | |||||||| || || ||||| |||| Sbjct 70090 AAATTGGCGACAAGTTTGCTTCTCGTCATGGCCAAAAAGGAACTTGCGGTATTCAATATC 70031 Query 63812 GACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCATCAATCCAC 63871 | || ||||||||||||||||| || ||||| || |||||| | |||| ||||| | Sbjct 70030 GGCACGAAGATATGCCTTTTACAAAGGACGGGATTACCCCCGATATTATCATAAATCCTC 69971 Query 63872 ACGCTTTTCCCAGTCGTATGAC 63893 | ||| |||| ||||||||| Sbjct 69970 ATGCTATTCCATCTCGTATGAC 69949 >SEQ18560 Length=475018 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 63745 ATACCAGAAATAGGTGATAAATTTGCTTCTTTTACAGCTCAAAAAGGTACGTGTGGTATG 63804 |||||| |||| || ||||||||||||||| | |||||||||||||| ||||| Sbjct 393211 ATACCACAAATTGGAGATAAATTTGCTTCTCGCCATGGCCAAAAAGGTACGTGCGGTATA 393152 Query 63805 ATTTATCGACAAGAAGATATGCCTTTTACCAAAGACGGTATCGTACCCGATCTCGTCATC 63864 ||||| |||||||||||||| ||||| || || | | ||| ||| | | || Sbjct 393151 CAATATCGGCAAGAAGATATGCCGTTTACATGCGAAGGCCTAGCACCTGATATTATTATT 393092 Query 63865 AATCCACACGCTTTTCCCAGTCGTATGAC 63893 || || |||||| | || ||||||||| Sbjct 393091 AACCCTCACGCTATCCCATCTCGTATGAC 393063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666865554941520