Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq66438 183 3e-41 seq101432 91.5 2e-13 >seq66438 Length=2923 Score = 183 bits (202), Expect = 3e-41 Identities = 411/616 (67%), Gaps = 15/616 (2%) Strand=Plus/Plus Query 16780 CAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTT 16839 ||| ||| | | || | |||||| |||||||| ||||| | |||||| | || || Sbjct 891 CAGCTCGACCAGCAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATT 950 Query 16840 CATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC 16899 ||| || || | | || || | ||| || || || ||| ||| || || |||||| Sbjct 951 CATGCCAATCAAATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGC 1010 Query 16900 TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACAT 16959 || ||| || | || || ||| ||| | ||| | ||||| ||||| Sbjct 1011 CTCAGCAATGATTTCAATAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACAT 1070 Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 |||||| || ||||| |||||||| || || || | ||| || || || || ||||| Sbjct 1071 CAGACAAGCAAAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGT 1130 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 ||| |||||||| || ||||| || |||||||| |||| || || || ||| Sbjct 1131 CAAGCCGGGCATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAA 1190 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 |||||| || || |||| ||||| || || | ||||| | | | || |||| | Sbjct 1191 GAATATGCCTTCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTT-TG 1249 Query 17140 ACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | || |||||| | |||| || || || |||| | | | |||||||| || | Sbjct 1250 ATGAGATCCATGCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAG 1309 Query 17199 CCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | ||||||| |||| |||| | || || ||||| || || | ||| | Sbjct 1310 CATTAAATANTTTC----CATCCT---------TAATGTAGGTATCAATAAGAATGCTAT 1356 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 ||||||| || || | || ||||| ||||| ||||| || |||||||| || ||||| | Sbjct 1357 ACATTTCTGAATGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGG 1416 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 ||||| ||||| ||| ||||| |||||||||| || || || || ||| | Sbjct 1417 TAATTTGTACTTCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGG 1476 Query 17379 CGGCGAAAAACGCCAA 17394 ||||||| || || || Sbjct 1477 CGGCGAAGAAAGCTAA 1492 >seq101432 Length=3068 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 ||||| || || || ||||| |||||| || ||||||||| || || || || | Sbjct 1276 CCCACATAACCATTTGGATCACATCCATCCAAACTGTATTTATCATTCAAA-AG-TATGG 1333 Query 119921 ACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 || | || || |||||| || |||||| | ||||||||||||||| |||| Sbjct 1334 CCGTCTCCAAAGCCAATTCAGGTGTAGGTGCCCATTCTAATATTTTTTTAGCCCAATACA 1393 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 | || || |||||||||||||||| ||||| | | || | |||||| | |||||| | Sbjct 1394 TGCGCAAAAATCCATGCATTTTACCCTCACGTATTAGCTGTATTTGTGCTGAGTTCCAGA 1453 Query 120039 AGGGATCGTGTGTACGGGCGTGTTCTAA 120066 | ||||| || || || ||||| || Sbjct 1454 GGTCATCGTACGTGCGTGCCTGTTCGAA 1481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516359805990600