Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq66438 154 2e-32 seq101432 102 8e-17 >seq66438 Length=2923 Score = 154 bits (170), Expect = 2e-32 Identities = 453/693 (65%), Gaps = 23/693 (3%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT--AAGTCGT 16093 ||| || |||||||| ||||| | |||||| | ||||| || || || || || Sbjct 909 ATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAAATTC-- 966 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 || || | ||| | |||||| |||| |||||| || |||||| || |||||| || Sbjct 967 ACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGATTTCA 1026 Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | || | ||| | || | |||| ||||| ||||| || || || Sbjct 1027 ATAATACGCTCCCTACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCAAAATCA 1086 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 ||||||| ||||| || | ||| || || ||||| || || || || |||||| Sbjct 1087 CAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGCATTAGA 1146 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || ||||| || ||||| || |||| |||||| || ||||||||| || ||||| Sbjct 1147 CCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCTTCAACG 1206 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATTTCTG 16392 | ||||| || || | ||||| | | |||| |||| | | || |||||| | Sbjct 1207 GCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTT-TGATGAGATCCATGCTAG 1265 Query 16393 TACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTC 16452 | |||| || || || | || | | |||||||| || || ||||| | |||| Sbjct 1266 TGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAATANTTTCCA 1325 Query 16453 TTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTAT 16512 | ||| ||| | | |||||||| || | || ||||||||||| || | Sbjct 1326 T----CCTTAATGTAG---------GTATCAATAAGAATGCTATACATTTCTGAATGCAC 1372 Query 16513 GTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--C 16570 || || || ||||| ||||| ||||| ||||| || || || | ||||||||||| Sbjct 1373 ATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACTTCTTG 1432 Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630 || ||| ||||| | || || ||||| || ||||| || || || || || || Sbjct 1433 ACTGAAA--CGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAAGCT 1490 Query 16631 AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690 || | ||| | ||||| ||| | |||||| |||||| | | ||| Sbjct 1491 AAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATGTCT 1550 Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAG 16723 ||||| | ||| || |||||| ||||||||| Sbjct 1551 TTGGAGAGATCAACCTCTTCTACGGTCCAAAAG 1583 >seq101432 Length=3068 Score = 102 bits (112), Expect = 8e-17 Identities = 180/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 119103 CCATTCCAGTAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTT 119162 |||||| | ||||||||||||||| ||||| || ||| | || |||||||||||||| Sbjct 1365 CCATTCTAATATTTTTTTAGCCCAATACATGCGCAAAAATCCATGCATTTTACCCTCACG 1424 Query 119163 AATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTTCTAAACT 119222 || | ||| | |||||| | |||||| || ||||| || || || ||||| |||| Sbjct 1425 TATTAGCTGTATTTGTGCTGAGTTCCAGAGGTCATCGTACGTGCGTGCCTGTTC-GAACT 1483 Query 119223 AGACGTATCGTATAGATAGGG--TCGTAAATCCTGTCGATGATCGTCTAACGTACGTAAA 119280 | | || |||||| |||| ||| ||| | |||||||| || | || Sbjct 1484 CGGC-TAGCGTATATGAAGGGCTACGTTTATCTTTACGATGATCTTCAAGAGTTTTAGCT 1542 Query 119281 GCCCATGGATGCGTTGAGGTAATAGAATCGTATAGTTTATTGTAATAACAAAAGTTGTCG 119340 ||||||| ||| | | | | |||||| ||| |||||| || ||||| || || Sbjct 1543 GCCCATGCATGTAATCCCTTTAGACTATCGTAATGTTCATTGTAGTAGCAAAAATTATCA 1602 Query 119341 GATAATTCCCGTCGTACAA 119359 | ||| || || ||||||| Sbjct 1603 GCTAACTCACGGCGTACAA 1621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510242653719400