Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq114852 502 3e-137 seq66438 221 1e-52 >seq114852 Length=3422 Score = 502 bits (556), Expect = 3e-137 Identities = 1237/1858 (67%), Gaps = 46/1858 (2%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| ||||||| ||| ||||| || ||||| || || |||| || |||| Sbjct 856 GCTGGTTTGGTACGTAAATAATACATGCCAGTTTTGAGCCCCGCTTTCCAACCAAAAAAG 915 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| ||| |||||| ||| | || || |||| ||| ||||| | ||||| ||| Sbjct 916 TGTATAGATGTAAGTTTGCCATAGTTTGGTTCAGCTACATGAATATTAAACGATTGGCTT 975 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| || || || || | || || ||||| || || | |||||| | || ||| Sbjct 976 TGATCAATAAATGCGCCACGATCGGCTGCCATCTTCATTGTAGTCTTTACCGATATCTCC 1035 Query 53009 CAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAGGTTTGTATTC--TGAATAGAT 53065 || | ||| || |||| | | | || | | | | | | |||| || | || || || Sbjct 1036 CACACAGTCTTGTAAAGTTCACGTATTTTTTGCGGTATTGTTTCAATACCTTGTATTGAA 1095 Query 53066 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 |||| | ||||| || | || || ||||||| ||| || ||||| | | Sbjct 1096 CCACGACTGGTTATAATTTTAGTTTTCATTTCATCATCCCACAAACCCAATTCGGTAAGA 1155 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 53185 | | | | ||| ||||||| ||||||||||| || || | ||| | ||| | ||| Sbjct 1156 TCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGATAGTACGCGACGATTATAA 1215 Query 53186 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 ||||| ||||| ||||| | ||| ||||| || |||| ||||||||||||||||||| Sbjct 1216 ATATTTGAAGTATAAGGTTCAAAAGATTCATTGTTGCCCATAATTTGAGCAGTTGATGCA 1275 Query 53246 GTCGGCATAGGTGCCACCAATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTT 53304 || ||||| ||||||| | ||| || | || | | || | | ||||| ||||| Sbjct 1276 GTAGGCATGGGTGCCAAAAGTAAGGAGTTGCGTACGCCATGCTGCT-TTATTTTCTCTTT 1334 Query 53305 ---TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361 || || ||| | ||| ||||| | ||| ||| || Sbjct 1335 CAATACAG---TCCAGTCCCATAGATCGGTTGGTTTTTTATTCCACATATCATATTGGAG 1391 Query 53362 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 ||||| || || | || ||| | ||||| || || | || | || ||||| | Sbjct 1392 TATACCTTTGCTAACAGGTGAGCCTTCGTATGTTTCATAAGTACCATATTTTTCAGCCAA 1451 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT-TAGAT 53480 ||||||||| || || ||||| || || || || |||||||| || | | ||| ||| Sbjct 1452 TTCACAACTAGCTTCCAATGCGCCATAGTACATTGTTTCGAAAATTTGTTGATTCAAGA- 1510 Query 53481 CTTGTGCTTCCAG---GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 53537 |||| || | ||| || |||| ||| | || || || || ||||| || | Sbjct 1511 ---GTGCAGCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCATCTGCAAAAC 1567 Query 53538 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 53597 |||| || ||||||||||| || | |||||| || || | | | ||| || | | Sbjct 1568 CTTGTACGCCAATACCGATGGGGCGATGTCTGAAGTTTGATTTCTTTGTTTCGGGCAATG 1627 Query 53598 GATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACAT 53654 |||||| ||| | || ||||||||||| || || | | || | ||| || | Sbjct 1628 GATAATGATTCACTTCGATAATTTTATTTAGATTACGCGTTACGGT---CTTGGTAACTT 1684 Query 53655 CCTTCA---GTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAATGCAA 53708 | || | ||||| ||||| || | | | | | |||||||| || | |||| Sbjct 1685 CTTTTAAGCGTTTG---AAATCGTATGACTTTTCGGGTGTAACAAACATATTTAGCGCAA 1741 Query 53709 TAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 53768 | ||||| | ||||||||| ||||| |||| | | | ||| | | || || |||| Sbjct 1742 TCGATGCTAAATTACAAACAGCTACTTCATCCGGTGCTGAATACTCAACAATTTCTGTGC 1801 Query 53769 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 53828 | | ||||||||| || ||||| || | |||||||||||||||||| ||||| |||| Sbjct 1802 ATAAATTACTACATTTAATGGTGCCAACATTTTGTTGATTACTCTTCCGATTACATGCAT 1861 Query 53829 CCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGA 53888 |||| || || ||| |||| || || || || | || ||||| ||||| || ||| | Sbjct 1862 CCTTGTACAGCATGTATGGTGTGCCGGTCTCTACTTGCGATTCAATAATAGCAAACCA-A 1920 Query 53889 CGAC-ACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACA 53945 ||| | || || | | | || || | | | ||||| || ||| ||||| | Sbjct 1921 AGACTTTGTGCTTTCACTGT--CTTATTAGCGCGTCCCTCTTGCTCATATTTAGTATATA 1978 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 || |||| ||||| || ||||| || | | || |||||||| | | || ||||||| Sbjct 1979 ATTGTTCGAACTCATCACCCCATACCTCATGCAGACCAGGACACTTGTGAGGGCACATCA 2038 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 |||||| ||| | | | | | || ||||||||||| ||||| || ||||| | ||| Sbjct 2039 GCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGTATCCATAAAGCAT 2098 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 ||||| |||||| | | |||||| || || || || || || || | ||| | ||| Sbjct 2099 AAAATAAATCTCTAGCACGATGTTCTTCCTTGCCAGTGTTTTTCTTTAAATCCAAAAACT 2158 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185 | | | ||| | |||||| ||||| || || || | | | ||||| ||||| | Sbjct 2159 CAAATACATCTGCATGCCATGGTTCTAAATAGATTGCAAACGCGCCAGGACGTTTACCAC 2218 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 | |||||||||| || | || ||||| | |||||||||||||| | | ||||| Sbjct 2219 CGCCCTGATCTACATAACGTGCCACATTATTGAATACTCTCAACATTGGTACCAAACCAT 2278 Query 54246 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA-CTA-ATTGA 54303 | |||| ||||| || |||| || | || || || || ||| | || |||| Sbjct 2279 TCGATGTGCCATTTGTACCGGCAATTGCCGTGCCTCTAGCGCGTATACAATGTACATTG- 2337 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || || || || || || ||| || |||||||| ||| | | | | | | || Sbjct 2338 -AGTCCAATACCACCAGCTGATTTGGAAATTAATGCACATTGATGTGCTGAAGTGAATAT 2396 Query 54364 GCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 ||| || || ||| | | || ||| ||| ||||| || || | ||| | | | Sbjct 2397 GCCATCAATCGAATCGGCGACCATTGTCAAG-AGAAAGCAAGATGATAGTTGTGGCTGCC 2455 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 | ||| | ||| || | || || ||||| |||||||| | ||| ||||||| || Sbjct 2456 TTGTTGCGGCAGCGAACAGTGTTGGTGAAGCATGCGTAAAATAACGTTCTGAAAGTAAAT 2515 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 |||| || ||||| |||| ||||||||| ||| || || | || |||||||||| Sbjct 2516 TGTATGTTTCGATGGCTGCATCTATATCCTCGCCATGTATACCAATGGCAACACGCATTA 2575 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||| ||||| || | ||||| || ||| |||| | | || ||||| || ||||| Sbjct 2576 ACATATGCTGTGGACGCTCAACAATTTTGCCATTTAATCTGAGTAAGTAAGAACGTTCCA 2635 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 ||||||||||||||||| || || |||||| || || || |||||| |||| || Sbjct 2636 GCGTTTTAAAACCAAAATAATTATAACCAAAGTCACGATCATATATAATAGCTGAATT 2693 >seq66438 Length=2923 Score = 221 bits (244), Expect = 1e-52 Identities = 477/709 (67%), Gaps = 20/709 (3%) Strand=Plus/Plus Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 ||| | ||| || ||||| || ||||| ||| | | ||||||||| || || | Sbjct 903 CAAGCGATCCGCCACAAATTCAATATAATCCGACATTAGCTTACAATTCATGCCAATCAA 962 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 || ||||| | ||| | || | |||||||||||||| ||||| || | || || Sbjct 963 ATTCACTGGCAAAGCATCTGTTAAGAATTCTTGTTCAATTTTAACCGCCTCAGCAATGAT 1022 Query 24083 AG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 24140 || ||| | || |||||| | | ||||||| ||||||| ||| || Sbjct 1023 TTCAATAATACGCTCCCT--ACTCGGCTTCTGTACCAAATGTTGGAACATCAGACAAGCA 1080 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| || |||| ||| || || | |||| || ||||| || || | |||||| Sbjct 1081 AAATCACAATGTAAACCTTCATCACGCGAGATTAGCTCATTGGAGAATGTCAAGCCGGGC 1140 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 ||||| ||||| ||||| | |||||| || || ||||| || |||||| || ||| Sbjct 1141 ATTAGACCACGTTTTTTCAACCAAAAGATCGAAGCAAAACTACCGCTAAAGAATATGCCT 1200 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC-ATGT-ATCCAC 24317 || || || ||||| ||||| | | ||| ||| || || ||| | ||| ||||| Sbjct 1201 TCAACGGCAGCAAATGCAATGACACGTTCACCAAAATTAGCCGCTTTTGATGAGATCCAT 1260 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 | | |||||||| ||||| || || ||| || || || ||||||||||| Sbjct 1261 GCTAGTGCCCAATCAGCCTTACGCTTAACGGCAGGGATCGTTTCAATAGCATTAAA---- 1316 Query 24378 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 24437 || ||| | ||| |||| || |||||||| | || ||||||||||| ||| Sbjct 1317 TANTTT---------CCATCCTTAATGTAGGTATCAATAAGAATGCTATACATTTCTGAA 1367 Query 24438 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 24497 || | ||||| || || |||||||| || || || || | || |||||||| |||||| Sbjct 1368 TGCACATTTTCCATTGCTATTTGAAAGCCATAAAAGCAACGTGCTTCGGTAATTTGTACT 1427 Query 24498 TCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 ||| || || ||||| ||| ||||||||| || || || || ||| || || || Sbjct 1428 TCTTGACTGAAACGTTCAACTAGATTTTCATTAACAATACCATCGGAGGCGGCGAAGAAA 1487 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 || || || ||| || |||| ||| | || || |||||| | || Sbjct 1488 GCTAAAACGTGTGATACGAAATGACGTTCATTGTCGGTAAGACGTACCCAATCGTCCATG 1547 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 ||||| || | ||| || ||||| || |||||||| ||||| || |||| Sbjct 1548 TCTTTGGAGAGATCAACCTCTTCTACGGTCCAAAAGGATGCTTCGGCCT 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592361272491600