Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tephritis_20californica_20[genbank_20GCA_5F001017515.1_202015-06-01] 183,295 sequences; 342,257,700 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq157162 96.9 3e-15 >seq157162 Length=2207 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | |||||| | || ||||| ||||| || || || || | Sbjct 388 AATGCAAATTTTCGTTAAAACACTAACTGGCAAGACCATCACTTTGGAGGTCGAGCCATC 447 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || |||||| |||||||||||| | || |||||| Sbjct 448 GGACACCATTGAAAATGTCAAAGCTAAAATTCAGGATAAAGAAGGTATCCCACCAGATCA 507 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | || || || || ||||||||| |||||||| ||| | |||| ||||| Sbjct 508 ACAACGTCTAATTTTCGCCGGCAAACAATTGGAAGATGGACGTACTCTATCCGACTACAA 567 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || |||||||| || ||||| |||| || || |||| || || Sbjct 568 TATCCAAAAGGAATCAACACTTCATTTGGTATTGCGTCTACGTGGTGG 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427379136863225